Daucus carota (carrot): 108218356
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Entry
108218356 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108218356 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108218356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108218356
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108218356
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108218356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
108218356
NCBI-ProteinID:
XP_017246760
LinkDB
All DBs
Position
4:complement(21896371..21916363)
Genome browser
AA seq
2403 aa
AA seq
DB search
MVPFSVTASTQIRYLLESVNDSNFDSVFQELCEFIEYGTQESILVLQTCFDQLAMHAKEY
KNMQLEPIFVSVFRNILNRPNFSTLLCQSLRSVSVNEEFLESLCKALQLAAPERIVIGLA
LSESENLDVRMCGKSFCINQIAQLCSNNESLESAEQIQNVIIFLNQSEGLSEHVDSFMEI
LSLVNLKEDSEFILSPLITDELREAKFFRNLDMLNDGSESEFDTILADMEKELSMADLMT
EFGYGCTVNVPQCKEMLSLFLPLTEATVAKIFGTVVRTSAGLDSYHQNTYLTFCSAITGS
SLSDLPHVDSWNVDVLIESIKQLAPGINWIKVFENLDHEGFYIPNEASFAILMSIYRYAC
QELFPLHAVCGSVWMNTEGQLSFLKHAVSAPPEVFSFAHSGRQLAYIDAVNDHKFHPGHA
NHAWLCLDLVEVLCQLAERGHAGSVRSMLEYPLKHCPDILLLGMASINTVYNLLQYEVYS
SVFPELLISSTGATVILHLWHVNPSLLLRGFMDAFSMDSSNMIRVLELCHELKILSLVLE
MVPFSFGIRMAALASRKELVDLEKWLNTNLVTYKDTLFEECLKFIKEVQISTQDTPPTRF
DQSGSLWNIYSETIPTFLKVLQANTSSISSRSLCEEIEKLNVTVMHSNIRVVNPNGTDST
TADGYAEDIETEINSYFHQMFSGQLAVDTMIQMLARYKESSEKREQSIFECMIANLFEEY
KFFSKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRGTHSELVAFIERALARISSSHSESDLGHVAAVDQHHN
PISAAHAEMQGPSFPSTGSSSMQIASSSSVQLQQRQQGSLEERNKASPPLSSYMKPALSS
STNASVTSSDTSSTLKSTANPVLSSTTGFLRTTRSTTSARFGSALNIETLVAAAERRETP
IQAPASEIQDKISFIINNLSPANAETKAREFSEFFQEQYYPWFAQYLVMKRASIEPNFHD
LYLKFLDKVNSKPLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKITIGRN
QVLRAREIDPKSLIIEAYEKGLMIALIPFTSKILEPCHNSLAYQPPNPWTMGILALLTEI
YAMPNLKMNLKFDIEVLFKNLAVDMKDVTPSSLLKDRPRETEGNPDFSNKDVAPSQASIV
GDVKPGVSSTLNQVELPHDVASPAHPTAHSHLLSQYAASVHLSAPTLEDDKVAPFVLSDQ
LPSAQGLLQVQSPFTVSQLPTPASNIEQQVVVNPKLHTLGLQRHFQSVLPAVMDRSIKEI
VSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLAGSLAHVTCKEPLRAS
IISHLRSSVQGLTLANELLEQAVQLVANDNLDLGCAHIEQAATEKAIQTIDGEIAQQLSI
RRKQREGVGPAFFDTSLYTQGHMGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSSQT
SNISPVGPSTSVSSALSQAYGSASGQLNSGPYSTLGNTGMGSVAHSLDLGSEELDAGPPK
QLSVSTMPSGLAEGVVQQNFESDAIPVSYPSASASELQSAEPTIVSKESGASVQALPSTS
TSERLGSSISEPSLTTGDALDKYQLVSEKLESLVTIDGTEADIQAIVSEVPGIILRCISR
DEAALAVAQKVFKGLYENESNNAHVGAHLAILSAIRDVSKLVVKELTSWVIYSDEDRKFN
IDITVGLIRSDLLNLAEYNVHMAKLLDAGRNKAATDFAVSLIQTLVMSNSKVISELHHLV
DALAKLAARPGSPESLQQLVEIARNPSASAASLSGLAVGKDDNLRHSRDRKQTTGLSAAS
REEYNLLDSVEPDPVGFRNQVSMLFAEWYQICELPGAKDAASAHFVLQLLQSGLLKGDDM
LDKFFRLLMELSVSHCLQSHQQTQPLSFLAIDIYAALVFSILKFFPADQGSSKLSLLSKV
LAVTVRTIHKDAEEKKTSFNPRPYFRLFINWLLDLTTLEPVTDGANLQVLIALANAFHAL
QPLKIPAFSYAWLELVSHRSFMPKLLTGNPQKGWPFFQRLLVDLFQFLEPFLRNAELGEP
VHFLYKGSLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPST
PNLKIDLLAEITQAPRILSEVDAALRAKQIKSDVDEFLKTKQQGSSFLSELKQKLLLPPS
DAARAGTRYNVPLMNSLVLYVGMQAIQQLQARTPPHAQGSVSLAAFHVGAALDIFQLLIT
ELDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEVIQEQITRVLLERLIVNR
PHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVEEGVVSGGLA
DMH
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atggttcctttttcagttacggcgtctacccagattcggtatctgctcgaaagcgtcaat
gattcgaactttgactctgtgtttcaagaattgtgtgagttcattgaatatggaacccag
gaaagcatattggtgctccaaacctgctttgaccaattggctatgcatgcaaaagaatat
aagaacatgcaactggaacctatattcgtatcagtttttagaaacattttgaataggcca
aacttcagcacactattgtgtcagtcacttagaagtgtgtcagttaatgaagagttcttg
gagagtctctgcaaggccttgcaactagcagcacctgaaagaatcgttataggtcttgct
ctatcagaatctgaaaaccttgacgtcagaatgtgtgggaagagtttctgcataaatcaa
attgcacagctatgttctaataatgaatcgctggaatctgctgagcaaattcaaaacgtt
atcattttcctcaatcaatctgaaggactttcagagcatgtggattcatttatggaaata
ctgtcactagttaatttgaaggaggattctgagtttatcctatctcctttgatcacagat
gaattgcgtgaagccaaatttttcaggaatttggacatgctcaatgatggctctgaaagt
gagtttgatactatcttggctgatatggagaaagaattaagtatggctgacctgatgaca
gaatttggttatggttgtaccgtgaatgtcccacagtgcaaagagatgttgtccctattc
ttaccattgacagaagctactgttgctaaaatatttggaacagttgttcgcactagtgct
gggcttgatagctaccaccagaatacctacttgacattttgttctgctataactggcagc
agcttgtccgatcttccacatgtagattcgtggaatgttgatgtgctcattgaatctata
aagcaactagctccaggaatcaactggataaaggtctttgagaaccttgatcatgagggt
ttctacattccgaatgaggcttcttttgctattctcatgtctatatacagatatgcgtgt
caggaactgttcccgctacatgctgtttgtggctctgtatggatgaatactgaaggtcag
ctatcttttctcaagcatgctgtctcagcaccacctgaagtatttagctttgcacattct
gggagacagctggcttacatagatgccgtgaatgatcacaagttccatccgggacatgcg
aatcatgcatggctatgtcttgaccttgtggaggtgttgtgccagctagctgagaggggt
catgcaggttctgttcgatcaatgctggagtatcctctcaagcactgccctgacattttg
ttgctggggatggcgagcattaatacggtatataatcttctccaatacgaagtttattca
agtgtctttcctgagctgctgattagttctactggggccactgtgatccttcatctctgg
catgtcaatcctagccttctgctgcgtggatttatggatgcatttagcatggactcgagt
aatatgattagagttttggagttgtgccatgagctaaagattctatcactggtattggag
atggttcctttttcttttggtatcaggatggctgcacttgcttctagaaaagaacttgta
gacctggaaaaatggctgaataccaacttagttacatataaagatacccttttcgaggag
tgcctcaagttcataaaagaggtccaaattagcactcaggatacgccacccacccgtttt
gatcaatctggttctctttggaatatttattcagaaacaatccctacatttttaaaggtc
ctgcaagctaatacgagctcaatttcttctcgcagtctttgtgaagaaatagagaagctg
aatgtgactgttatgcattctaatataagggttgttaatcctaatggtactgattccaca
actgctgatggatatgcagaagatattgagacagagatcaactcttattttcatcagatg
ttttctggccagttggcagttgatacaatgattcagatgcttgctcggtacaaagagtca
tctgaaaaaagggaacaatctatatttgagtgcatgattgcaaatctatttgaagaatac
aaattcttttctaagtaccctgaaaggcagctcaagattgcggcagttctttttggatca
cttattaaacaccaacttgtcacccatctcacgcttggcatcgctttgcgtgctgttctg
gatgcattacgcaagcctgcagattcaaaaatgtttgtttttggcaccaaagctctggaa
cagtttgttgaccgactgattgagtggccccagtattgcaatcatattttgcaaatatct
catttacgtggtactcattcagagcttgttgcattcattgaacgagcacttgccagaatc
tcatcaagccattcagagtcagatttgggccatgttgctgctgtcgatcaacaccacaat
cctatttctgcagcacatgccgagatgcagggcccctcgttcccttctactggatctagt
agcatgcaaatagcatcctcttcttctgtccagcttcaacagaggcagcagggttcctta
gaagagcgcaataaagcttctccgccgttgtccagctacatgaaaccagctttatcatct
tcaactaatgcttcagttacctctagtgatacatctagtacattaaagagtacagctaat
cctgtattgtcttcaaccactggttttcttcgtaccacccgctcgactacttcagcacgg
tttggctctgctttgaatattgaaacacttgttgctgctgcagagcgaagggaaactcca
attcaggccccagcatcagaaattcaggacaaaatatcatttatcataaataacctatct
ccagctaatgcggaaactaaagcaagagaattttccgagttcttccaagagcaatattat
ccttggtttgcccaatatctggtgatgaaaagagcaagcattgaaccaaattttcatgac
ttgtacttgaagttcttggacaaagttaattcaaagcctttgaacaaagaaattgttcaa
gctacatatgaaaactgcaaggtattgttgggatctgaactcatcaaatcaagttctgag
gagcgttcactgttaaagaatcttggaagctggcttgggaagattacaataggcaggaat
caagtattgcgggcgcgagagattgatcctaagtctttaattatagaggcttacgagaag
ggtttgatgattgctttaattccatttacctcaaagatattggaaccatgtcacaacagt
ctagcttatcaaccacccaatccttggactatgggtattcttgcattactaactgagatt
tatgcaatgccaaatttgaaaatgaaccttaagtttgacattgaggttctatttaaaaac
cttgctgtggatatgaaagatgtcactcctagttctcttctcaaggacagaccaagagaa
acagaaggaaatcctgatttttccaacaaagatgttgcaccatctcaggcatcgatagtt
ggtgatgttaaacctggtgtgtcgtctactcttaatcaagttgagctgccacatgatgtt
gctagtcccgcccatcctactgcacattctcacttattatcccagtatgctgcttctgtt
catctttctgcgcctacattggaggacgataaggtggctcctttcgtcttatctgatcag
ctcccttctgctcaaggacttctacaagtgcaatctcccttcactgttagccagcttccg
acaccagcttctaatattgaacagcaagtggtagtcaaccccaaattgcatactctgggt
ctgcagcgacattttcagagtgtactccctgctgtcatggatcggtctatcaaagaaatt
gtatccagcattgtgcagcgtagtgtttctattgcaactcagacaaccaaagagctagtg
ctaaaggattatgctatggaatcagacgagactcgaattcgtaatgctgcacacttaatg
gtggcaagtttggctggaagcctcgcccatgtgacatgcaaggaacctcttcgcgcttca
attataagtcacttgagaagctcagttcaggggttgactcttgcaaacgaacttcttgaa
caagctgtacagcttgttgctaatgataaccttgacctgggatgtgctcacattgaacaa
gctgcgacagagaaggctatacagactattgatggggaaatagcacaacaattatctata
agaaggaagcaaagggagggtgttggtcctgcattttttgatacaagcctgtatactcaa
ggtcacatgggggttttacccgaggccctccgaccgaaacctgggcgtctttcgcactcg
caacagagagtgtacgaggattttgtccggttaccctggcaaaatcaatctagtcaaacc
tcaaatatttctccagtgggtccttcaacatccgtcagtagtgccctttctcaggcatat
ggttcagcatctggtcaactaaattctggtccctattcaacccttggaaacacaggaatg
ggttctgttgcacattcccttgatcttggctctgaagaactggatgctggtccaccgaaa
caacttagtgtttccacaatgccttctgggttggctgaaggtgtagttcaacaaaatttt
gagagtgatgctatccctgtttcttatccttctgcttcggcatctgagttgcagtctgca
gaaccaacaattgtttcaaaagaatctggagcatctgtgcaggcattgccttctacatcc
acaagtgagcgacttggaagcagcatctcagaaccatcattgactacaggcgacgcgctg
gacaagtatcagcttgtttcagagaagcttgaaagtttagtcactattgatggtacagaa
gctgatattcaggcaattgtttctgaggttcccgggatcattctaaggtgtataagtcga
gatgaggctgcattggcagtagctcagaaggtttttaaagggctatatgaaaatgagtcg
aacaatgcacatgttggtgcacaccttgcaattctctctgccattcgtgatgttagcaag
cttgttgtcaaggagctgactagttgggtaatctactctgacgaggaccggaaattcaac
atagatattactgttggccttattcgaagcgacctgctcaatcttgcagagtataatgtt
catatggcgaagcttcttgatgcaggaaggaataaagctgccacagactttgcagtgtcc
ctcattcaaactctagtgatgagcaattcaaaagtcatatctgaattacatcatcttgtt
gatgcacttgctaagcttgcagcacggcctggatctcccgagtcattacaacagcttgtg
gagattgctaggaatccttctgccagtgctgcttctttatcaggtcttgctgtcgggaaa
gacgataacctgagacactctagagacagaaagcaaactactggtctctctgcagcaagc
cgggaagagtacaatctcttggactctgtggaaccagatccagttggattccgcaatcag
gtctcaatgctgtttgcagaatggtatcagatatgtgaacttcctggggcaaaggatgca
gcttctgctcactttgtcttacagttgctgcaaagtgggctgctgaaaggggatgatatg
ctggataaatttttccgccttcttatggaactctctgtgtctcactgtctacaatcacat
caacaaacccagccactgtctttccttgctattgacatatatgcagcactcgtcttttcg
atactcaagttctttccggcagaccagggatcaagtaaactatctctgctgtccaaggtt
ctggcggttactgtgagaactattcacaaagatgctgaggagaaaaaaacatctttcaat
cctagaccttattttaggctgttcatcaactggctgcttgacctgactaccttggagcca
gtgactgatggtgcaaacttacaggttttgatagcacttgccaatgcattccatgcactg
caaccacttaaaattcctgcattcagctatgcttggcttgagcttgtgagtcatagaagt
ttcatgccgaagttgctgactgggaatcctcagaagggttggccttttttccagcgtttg
ctggtagatttattccagtttttggagccattcctgaggaatgcggaactcggagagccg
gttcattttctgtataaaggttcgctgagggtattgttagtgctgcttcatgattttcca
gaatttctctgtgactatcatttcagcttctgtgatgttattcctcccagttgcatacaa
atgcgaaatataatcctcagcgcatttcctcgcaacatgaggctgccagatccttccact
cccaacttaaagattgatctgttggcggagatcactcaggccccacgtatactctcggag
gttgatgctgctctgagagcgaagcagattaagagtgatgttgatgaattcctgaagacc
aagcaacaagggtcttcttttctttctgagctgaagcaaaaactgctgctaccaccaagt
gatgccgctcgagctggaactcggtacaatgtacctctgatgaactcccttgtactttat
gttggaatgcaggctatacagcagctgcaggcgagaactccccctcatgcacagggaagt
gtctcattggctgcatttcatgtgggtgctgcattagacatctttcagttattaatcaca
gagctagatacagaagggcggtaccttttcctaaatgctgttgctaaccaactacgttat
ccaaacaatcatacacattacttctctttcatcctgctctacttgtttgcagaatcgaat
caggaagttatccaggaacaaattaccagagttttattggaacgtctcattgttaatcga
cctcatccttgggggcttttaatcacattcattgaactcattaagaatccaaggtacaac
ttctggagtcggtctttcaccagatgcgcaccggagattgagaagctctttgagtcagtc
tcgagatcatgcggtggtccaaaacctgtggaagaaggggtggtttccggtgggttggct
gacatgcactag
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integrated database retrieval system
