Daucus carota (carrot): 108224700
Help
Entry
108224700 CDS
T05350
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108224700
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108224700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108224700
NCBI-ProteinID:
XP_017254883
UniProt:
A0A161WTD2
LinkDB
All DBs
Position
6:complement(32054586..32057841)
Genome browser
AA seq
488 aa
AA seq
DB search
MVQGTCILLIFCLTTFSPLALATLSSFNFTSHIAHPDPESVVQDLQRRVNISVSRRNLLS
YENSVRSTNCQTGNPIDDCWRCDPNWQLNRFRLADCGIGFGQYALGGKNGRYYIVTDSSD
HDAVNPSPGTLRYAVIQTEPLWIVFATNMLIHLSQELIFNSYKTLDGRGANVHITGGGCI
TLQYISNVIIHNIHIHHCYESGNTNVRSSPTHFGYRTKSDGDGISIFGSRDIWIDHCSLS
NCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSKMQVTIAFNHFGPKLIQR
MPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYTAPVDRNAKEVTKRVESSHQK
WRDWNWRSEGDIMVNGAYFITSGESLELKYEKAYSVEPKSAVIIDQLTVNAGVLGHRRNN
LGKWTSGGDENGVPGSDSGDLDDDYDYGSESSAAAHPPGAPANFIVFPFLIALSSLLFLF
VSTKSNLL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggtacaagggacctgcattttgctcatcttttgcctcaccacattttctcctcttgct
ttggccacactctcttctttcaactttacatctcacattgcccatcctgaccctgaatct
gttgttcaagatctgcagaggagagtgaacatttcagtgtccagaagaaacctgctttca
tatgaaaacagtgttcgctccaccaattgccaaaccggcaatccaatcgacgactgctgg
cgctgcgaccccaactggcaactaaaccgctttcgtctagcggactgtggtatcggattc
ggtcaatatgctcttggtggtaaaaatggccgttactacattgtcaccgattcttcagac
catgatgctgtcaatccatcacctggcacactccgttacgccgttattcaaaccgagcca
ctctggatcgtcttcgcaaccaacatgctcatccatctctcccaggagctcattttcaac
agctacaaaacgctggatggacgcggcgccaatgttcacatcacgggagggggctgcatc
acgttacaatatattagtaacgttattatccataatattcacattcatcattgttatgaa
tcgggcaatacgaatgtccggtctagtccgactcatttcgggtatcggaccaaatcggat
ggcgacggtatatccattttcggatcaagggatatttggattgatcattgttcgttatcc
aactgtaaagatggattgattgatgcggtgatggggtctactggaatcacgatttctaac
aattttttttcgcatcataatgaagtgatgctgctagggcacagcgatgattatttaccg
gattcgaaaatgcaagttacgattgcgtttaatcacttcggaccgaaattaattcaacgg
atgccgcggtgcagaagagggtatattcatgtggtgaataacgactttacgagatgggaa
atgtatgcaattggagggagcggtaatcctacaattaacagtcaaggaaaccgttacacg
gctcccgtcgatcgcaatgcgaaagaggtaacgaagagggtagaatcgtcacaccagaag
tggagagactggaactggaggagcgagggggacataatggtaaatggagcctactttatt
acatcgggtgaaagtttagagctaaagtatgaaaaggcttacagtgtggagcccaaatcc
gctgttatcattgaccaactcaccgttaatgccggtgtcctcggtcacaggagaaataac
ctggggaagtggactagtggcggagacgagaatggcgttccaggatcggattccggtgat
ttagatgacgactatgattatggttctgagagtagtgccgcggctcatccaccaggcgct
ccggcaaattttatagtctttcctttcctaatcgcattgtcatcgttgttattcctgttt
gtctcgaccaaatctaatttattgtag
DBGET
integrated database retrieval system
