Daucus carota (carrot): 108227776
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Entry
108227776 CDS
T05350
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108227776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227776
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108227776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_14
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_16
TPR_12
TPR_9
TPR_19
TPR_6
TPR_15
BTAD
TPR_NPHP3
TPR_7
DUF6584
Motif
Other DBs
NCBI-GeneID:
108227776
NCBI-ProteinID:
XP_017258603
LinkDB
All DBs
Position
6:complement(5966990..5983822)
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AA seq
1172 aa
AA seq
DB search
MEEKEDSVLIQLQQSVHSNPDDSSLHFNLALYLWEHSKEINSIKEKAAEHFVISAKLDPH
NPNAFRYLGDYYSQVSLDSTRALKCYQRALSLLPNDSYIGESICDLLDKEGKESLEIAVC
REASEKSPRAFWAFRRLGYLQVYQKKYSEAVQNLQHAIRGYPTSADLWEALGLAYQQLGM
LTAAIKSYGRAIELEDSRVFALIESGNIFLMLGSFSKGVEQFQDALRISPQNVAAHYGLA
SGLLSLSKECINSGAFKWGSSLLEEASETAMASTTLTGNISSLWKLHGDIQLTYAKSYSW
MDEKQGLQDDELAFTNSILTWQKTCFSAAVLASRSYQRALHLAPWQANIYIDIGIAVDAM
CSLKEKEINNLYALQLPEKMTLGGLFLEGYNDEFWVALGCLSLDAALKQHALIRSLQLDV
SLASAWAYLGKLYKKEGDKRLAQEAFDRARSIDPSLALPWAGMSADSYTREIKVDEAYEC
CLRAVQIMPIADYQIGLANLALLSGNLTSSQVFGAVRQALQRAPHYPESYNLNGLVYEAR
HEYLTASVFYRLARCAICASEKGSNSRLRDISVNLSRSLCKAGNAVDAIVECENLKKEGL
LDSKGLQIYAFSLWQLGKNELVLSAVRTLASSVLSLEKTSVPGCISFICRLLYYISGKES
AIKSIMKMPKDLFQSSKVSFVLSAIHALDQRNQLDSVVSSSRCFVVSPAEITGMHILIAL
GKLVKHGSENCLAIQNGVNHLRKTLHMYPNSGLIRNLLIYLLLCNREWNSIHLATRCLVV
CDSDYQKEEDFRSPIEILGAAAVACYSGGNHSDKLSLPTCRGQCLSGHEAIQRLQKWLRQ
EPWNKSARYLLILNYLQKAREQRFPRHLCILLERLTSVALSDQFHSKRDQYQKFQLLLCA
SEICLQGKDYTGCISHASDASEIRIPDSYLFFAHLLLCRAYAAKGIFLSLNEEFTRCLEL
KTSYHIGWIGLKYMESQYKLQSVSPGIELNFEECSKEIRYSWHMWMAVFDMVKGLIAISS
QDYLQAEEFLSQSCSFASDESCLFLCHGAICIELAKLQCDSHFLSLALKSLKKAKGTSPA
PLPFVSLLLAQVEGSFGSETKWENNLQLEWVSWPPELRPAELFLQMHLLSKLSVSDSTST
LEFRKSSLKWILQAIHMNPSCFRYWKVLERYM
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaagaagactcagtattaatacagttgcaacaatctgtacactccaatcca
gatgattcctctctccactttaatctggctttgtatttatgggaacatagcaaggagatt
aattctattaaggagaaagctgctgagcattttgtgatttccgctaagcttgatcctcat
aatcctaatgcatttagatatttgggggattattatagccaagtttcgcttgactctact
agagctctcaagtgttaccagagagcactctcccttcttcccaatgattcctatatcggg
gagtccatatgtgatttgttggacaaagaaggtaaggaaagcttggaaatcgctgtgtgt
cgtgaagcttcggagaagtcgcccagggctttttgggctttccggcgacttggttatctt
caggtctatcaaaagaagtattctgaagctgttcagaatttacaacatgcgattcgcggc
tatccgacctctgctgatctgtgggaagcattggggcttgcctaccagcaactggggatg
ttaactgcggctataaagtcatatgggcgagcaatagagttggaggactcaagagtgttt
gcattaatcgaaagtggaaacatcttcttgatgcttggctccttttcaaagggagttgag
caatttcaagatgctttacgtatctcaccgcaaaatgtcgctgcacactatggtcttgct
tctggattgcttagtttatcgaaggaatgtattaattcaggcgcgttcaagtggggatct
tcactgttggaggaggcatctgaaacagcaatggcaagtaccaccttaactggaaacatt
tctagtctttggaagttgcatggagatatacagcttacatatgcaaaaagctattcatgg
atggatgaaaagcaaggactacaagatgatgagttagctttcacaaattccattctcaca
tggcaaaaaacctgcttttcagctgcagttttggccagtcgttcttatcaacgggctttg
cacttggctccatggcaggctaacatatatatcgacattggtattgctgtagatgccatg
tgctcattgaaggagaaagaaattaacaacctgtatgcgttacagctacctgaaaagatg
accttggggggcttattcctcgagggttacaatgatgagttctgggtggctctaggatgt
ttatcacttgatgcagctttgaaacaacatgctttaatacgttcattgcagttagatgta
tctcttgcttctgcatgggcatatcttgggaagctttacaaaaaggagggtgataaacgt
ttagcccaagaagcctttgatcgagctagaagcatagatccttcactagcattaccctgg
gcaggcatgtcagcagattcttatacaagggagatcaaggtggacgaagcttatgagtgc
tgtttacgagctgtgcaaataatgccaattgcagattatcaaataggtcttgcgaacctt
gctctgctgtctggtaatctaacatcgtcacaggtcttcggagctgtccgccaggccttg
caacgggcaccccactatcctgaatcctacaatttaaatgggctggtctatgaggcacgg
catgaatatctgactgcctctgtcttttataggttagcaagatgtgcaatatgtgcatca
gaaaagggatcaaattctagactcagagatatatcagtcaatttatctagatctctttgt
aaggcaggaaatgctgtcgacgcaatagtagaatgtgaaaatctgaagaaagaaggtcta
ctcgactcaaaaggtctgcagatatatgcattttcattatggcaacttggaaagaatgag
ttggttctgtctgccgtgagaactttggcttcaagtgttttatcacttgaaaagacatct
gtaccaggctgtataagcttcatatgtagattattgtactatatttctggaaaagaatct
gcgattaaaagcataatgaaaatgcccaaggatctttttcagagttcgaaagttagcttt
gttctatctgccatccatgcactagatcaacgtaatcagctagattcggttgtttcaagt
agcaggtgttttgttgtgtcacctgcagagatcactggaatgcatattttaatagcgctt
ggtaaattagttaaacatggatcagaaaattgccttgcaattcaaaacggagtaaatcat
cttagaaaaactcttcatatgtaccctaacagtggattgataaggaatcttcttatttat
ttgttactctgcaatagagagtggaatagtattcatcttgcaactaggtgtcttgttgta
tgcgattctgattatcaaaaagaggaggattttagatctcctattgaaattcttggtgct
gctgcagttgcctgctacagtggtgggaatcacagtgataaactttcacttccaacatgt
cgaggccagtgtctgtctggtcatgaagcaatccagcggctgcaaaagtggctacgtcaa
gagccatggaacaaaagtgcaaggtatttattgatactaaactatctgcagaaggcacgt
gagcagagatttccccgtcacctttgtattttgcttgagcgtctaactagtgtggctctt
tctgatcaatttcactcgaaaagagatcagtaccagaagttccagctactactctgtgct
tctgagatttgtctgcaaggaaaagactacactggctgtattagccatgctagtgatgct
tcagaaataaggattcctgatagctatctcttctttgcgcatttgttattatgccgtgct
tatgcggcaaaaggaatttttcttagtcttaatgaggagttcacaagatgtttggagctg
aaaactagttatcatattggttggataggtctcaaatatatggaatctcaatataagctc
caaagtgtttcccctggaatagagttaaattttgaagaatgttctaaagaaataagatac
tcctggcacatgtggatggcagtatttgatatggtaaaaggacttattgctatcagctcg
caagattatcttcaagcagaagagtttctttcacagtcttgttcatttgcaagtgatgaa
agttgcctctttctttgtcacggtgctatctgtatagagcttgcaaagttgcagtgtgat
tcacattttctgtcacttgctcttaaaagtctaaagaaagccaaagggacttctccagct
cccttgccctttgtctcacttttgctagcacaagtggaaggaagctttggatcagaaaca
aagtgggagaataaccttcagcttgaatgggtttcatggccaccagagttgaggcctgct
gagctctttcttcagatgcatttactatccaaattgtctgtttctgactcgacttctact
ctggagtttcgtaagagttcactaaaatggattcttcaagcaatacacatgaatccttct
tgtttcagatattggaaagttttggagaggtatatgtag
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