Dendrobium catenatum: 110099806
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Entry
110099806 CDS
T05027
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110099806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110099806
Spliceosome [BR:
dct03041
]
Complex B
Other components
Prp19-related factors
110099806
Complex C
110099806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH
zf-CCCH_3
zf-CCCH_4
RRM_3
Motif
Other DBs
NCBI-GeneID:
110099806
NCBI-ProteinID:
XP_020682749
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMTIAHYDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTAMAINSNDAIPKSDVNREYFAE
EHDRRARAGIDYDSSYGKIRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSSLAPPDDETIKTLYVGGLDARIT
EQDLRDNFYACGEIESIRMVSQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGK
PQAPKLETEPGDDEASHQGLVVAHGGLLPRSVISQQQQSSQPLPLHYFNIPPPPLPSERS
FYPSMDPQRMGAMVPLSQESSNGKTELERPPLHMKGQYPPYYPPYAYMAPPPPPQYQQQQ
YHHPFHQMTAPRPPPPLSAALQLQPSGADLASSSHG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctccgcgacgctcaggccgacggctgggagcgctctgacttcccg
atcatatgcgagtcatgtctcggtgataacccctacgttcgaatgaccatagcgcactat
gacaaagagtgcaaaatttgcaccaggcctttcacggtcttcaggtggaggccaggtcgt
gatgcacgatttaagaagaccgagatttgccagacttgtagtaagctaaaaaatgtatgc
caggtttgcctcttggacctggaatatggtttgcccgtacaggtccgcgatacagcaatg
gctataaattccaatgatgccatcccaaagagtgatgtcaatagggaatactttgctgaa
gagcatgaccggagggcaagagctggaatagactatgattcttcatatgggaagatacgt
ccaaatgataccattttaaagcttcaaaggactacaccatattacaagagaaatcgggct
catgtttgcagtttctatgtgcgtggagaatgcactcgaggtgctgaatgcccttaccgg
catgaaatgcctgtaactggagagctttcacaacaaaacattaaggatcgatattatggt
gtcaatgatcccgtcgccctcaaactcctcggaaaggccggcgagatgtcatctctagct
ccacctgatgacgagaccataaaaaccctttatgtcggcggtctcgacgcccgaatcacc
gagcaagatctgcgggacaatttctatgcctgcggagagatcgaatccattagaatggtc
tcccaacgcgcttgcgccttcgtctcctacaccaccagggaaggagccgagaaagctgcg
gaggagctctcgaacaagcttgttattaagggcctccgcctaaaactaatgtgggggaag
ccccaggcaccaaagttagaaacggagccaggcgacgacgaagcttctcaccaaggactc
gtcgtcgcccatggcggcttactcccaaggtcagttatatcgcagcagcagcagagcagc
cagccgttgcctcttcattacttcaacattccgcctcctccattgccgtcggagaggagc
ttctacccttcgatggatccgcagaggatgggagcgatggtgcctttgtctcaggagtcg
agcaatggcaagactgaattagagaggcctcccctacatatgaaaggtcagtacccacct
tactatccaccttatgcttatatggcacctcctcctccacctcagtatcaacagcagcaa
taccaccacccatttcatcagatgacagcacctcggccgccaccgccattgtcggctgct
ctgcaactccagccttcaggagctgatttagcttcatcatcacatggttga
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