Dendrobium catenatum: 110099820
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Entry
110099820 CDS
T05027
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
dct
Dendrobium catenatum
Pathway
dct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110099820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dct03400
]
110099820
DNA repair and recombination proteins [BR:
dct03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110099820
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
110099820
NCBI-ProteinID:
XP_020682769
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MGKPKQQVLSRFFAPKSTSPLASMEQKSPPPPSPPRSKPSPRIAAIVSFSPSATSSKRSH
PHSQNPSSCAKKPKPSLHEKLVSKLLDSPASSSVTLPKPSAENPKYTPLEQQVLELKSQH
PDVLLMVEVGYRYRFFGEDAENAARVLGIIAHADHNFLTASVPTFRLNFHVRRLVAAGYK
VGVVKQTETAAIKAHGSNRLGPFSRGLSALYTRSTIEAAEDMGSGKEDGLVGSDGNYLLC
VAEKEAVAGYKGSDLEGCFDVKIGIVGVEISTGEVIHGEFNDNVMRSGLEAVVLSLSPAE
ILLGDPLSASTEKLLLAYAGPASNVRVERSSRDCLNDGGALAEVMSLYEEVAGDTPNVKN
VETNLDIRRGRDDSSGIEGILAMPELSIQALALSLRYLKKFGLERILIMGASFRPLSSNV
EMTLSANTLHQLEVLRNSCDGSIEGSLLHAMDHTCTSFGSRLLKHWVTHPLCERNSIIAR
LDAVTEIADSMGSCRGLKEETSCNETSSILSEVLKMLGKSPDVQRGITRIFHRTATAAEF
VGAIQAILFSGKQLQKLYAEDDENNVTRIVKSALLRRLILTASSTTLIARAAQLLSSLNK
DAANQGDMLNLFNTSCGQFPEVASSQIAVQMTKEKLDSLIIQYRKQLGMRNLDFTSVSGV
THLIELSSDTKVPSSWVKVNSTKKSVRYHTPEVLATLDKLVLAKEEFAVTCRKTWAIFLT
EFGTYYAQFQASVQALAGLDCLHSLAILSRNQKYVRPTFGSNDEPGQIHISSGRHPVVYS
QVLGSVLGEHFVPNDTCLCADGEYCQVVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASS
ATLHVLDGIYTRMGASDSIQHGSSTFFEELAETSYILEHSTSRSLVIIDELGRGTSTHDG
VAIAHATLHYLLQQKKCMILFVTHYPQILDIQSEFEGSVGAYRVSYLTAQKPLNLMESKP
EFDNGEVDEQEVTFLYKVVHGASDKSFGLNVARLAQLPDLCIRRAAFIAAKLEADMGSQL
RNLATMSGNKTIEKYEASDNCSISPKYAYKDDEPFEELAKACHSIFFCVKSALQSADTDR
ILSCWKGARELAQIATKGG
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacctaagcagcaggtcctctcccgcttctttgccccaaagtcgacgtctcct
ctggcgtcgatggaacaaaaatcaccaccgccaccatcccctccccgttccaaaccctca
ccgaggatcgccgctatcgtctctttttccccgtccgcaacttcctctaagcgttcccat
cctcattcgcaaaacccgtcctcatgtgccaaaaaaccgaaaccctcgctccacgagaag
ttggtgtcgaagctcctcgattctcccgcttcctcctcggttactctcccaaaaccctcg
gctgaaaaccccaaatacactccactcgagcagcaggtcctcgagctaaaatctcagcat
ccagacgtactcctcatggtagaggtcggctaccgctaccgtttctttggcgaggacgcc
gagaacgctgcgcgagtccttggcatcatcgctcacgcggaccacaattttctcactgcc
agtgtgcccacattccggctaaattttcatgtccggcgccttgttgccgccgggtacaag
gtgggtgtagttaagcagacggaaacggcggcgattaaggcacatgggtcgaaccggcta
ggaccgttttcaaggggcttgtcggcgttgtatacgaggtcgacgattgaagcagcggag
gatatgggaagcggaaaggaagacgggctggtgggttcggacgggaattaccttctctgt
gttgcagagaaggaagctgtggctggatataaaggttctgatctggaaggttgttttgac
gtgaagattgggatagttggagtggagatatcgactggggaggtcattcatggtgagttc
aatgacaatgttatgagatcggggctcgaagccgtggttttgagcttatctccagcagaa
atccttctaggagatcctctttctgcatctacggagaagctgctgttggcctatgctgga
cctgcatctaatgttcgagttgaacgaagttcccgagactgtttaaatgatgggggtgca
cttgctgaagtgatgtccttatatgaagaggtggctggggataccccaaatgtgaaaaat
gttgaaacaaatttggacatcaggagagggagagacgattccagtgggattgagggaatt
ttagccatgccagaactatctatccaagcattggcattatccttgcgataccttaaaaag
tttggtttggaaaggattttaatcatgggtgcttctttccggcctctctctagtaatgtt
gagatgacgctatcggcaaatacacttcaccagttggaggtcttgcggaacagctgcgat
ggttctattgaaggttcattgctacatgctatggatcacacttgtacttcatttggttca
agacttctgaagcactgggttactcatccattatgtgaaagaaactccataattgcacgt
cttgatgcagttactgaaatcgcagattcaatggggtcttgtagaggtttaaaagaagaa
acttcatgcaatgaaactagttctatactttcagaagttttaaagatgttggggaagtca
ccagatgtacaacgtgggataactagaatttttcacagaactgctacagcagctgagttc
gttggggccatccaagctatcctcttctctggcaagcaattacagaagctttatgctgaa
gatgacgaaaataatgttactagaattgtgaaatctgctcttctgagaaggctaattttg
accgcatcatcaactactttaattgctcgagctgcacagcttctctcctctcttaacaag
gatgctgctaatcagggtgatatgctcaatttgttcaatacttcttgtggtcaattccca
gaggttgctagcagccaaatagctgttcaaatgaccaaagaaaagcttgattcattaatc
attcagtaccgaaaacagcttggaatgcggaatttagacttcaccagtgtctctggagtc
acccatttaattgaattatcttctgataccaaggttccttccagttgggttaaggtcaat
agtactaagaagtcggtgagatatcataccccagaggtcttggcaacattggataagttg
gtgcttgcgaaggaagaatttgctgttacatgcaggaaaacatgggctatttttttgaca
gagtttggtacatactatgctcaatttcaggcttcagttcaagctctggctggtttggat
tgtttgcattcactagccattctctcaaggaatcagaaatatgtgcgaccaacatttggg
agtaatgatgaacctggtcaaatacatatcagttcaggtcgccacccagtggtgtactcg
caggttctggggtccgtcttaggagaacattttgttccaaatgatacgtgcctttgtgca
gatggtgaatattgccaggtagtcaccggaccaaatatgggtggaaagagttgctacata
cgccaggttgcccttatagcaataatggctcaggttggttcctttgtaccagcgtcatca
gcaactttgcatgtgctggacgggatatacactcgcatgggagcttctgatagcatccag
catggatcaagtaccttctttgaagaattggctgagacttcttatattctagaacattcc
acatcacgctctctggtcattatcgatgaactcggccgtggaacaagcacccatgatggt
gttgcgattgctcatgcaacattgcattatcttcttcaacagaagaaatgtatgattctt
tttgtcacccactacccccaaattctggatatacagagtgaatttgaaggatcagttggt
gcatatcgcgtttcttatctaaccgcacagaaacctttgaacttgatggaatctaaacca
gaatttgataatggagaagtggacgaacaagaagtgacctttctatataaggttgttcat
ggtgcatcagacaagagctttggtcttaatgttgctcgcctcgcacagctgcccgatttg
tgcattagaagagcagctttcatcgcggcaaaactagaagcagacatgggttcacagcta
agaaatctagcaacaatgtctggtaataaaaccatagagaaatatgaagcttctgacaat
tgttccatttcacctaaatatgcgtataaagatgatgagccctttgaagaactggcaaaa
gcatgccacagtatatttttctgtgtaaaatcagccctacaaagtgctgacacagataga
attttaagctgttggaagggcgctcgagaacttgcacagatagcgacaaagggagggtga
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