Deferribacter desulfuricans: DEFDS_1156
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Entry
DEFDS_1156 CDS
T01188
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
DEFDS_1156 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ddf03016
]
DEFDS_1156 (trmU)
Enzymes [BR:
ddf01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
DEFDS_1156 (trmU)
Transfer RNA biogenesis [BR:
ddf03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
DEFDS_1156 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_M
tRNA_Me_trans_C
ThiI
NAD_synthase
QueC
DUF7411
Arginosuc_synth
ATP_bind_3
zf_PCFS4
Motif
Other DBs
NCBI-ProteinID:
BAI80625
UniProt:
D3PDF2
LinkDB
All DBs
Position
1155157..1156197
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AA seq
346 aa
AA seq
DB search
MKDKIIVAMSGGVDSSVAAYKMLKEGFDVVGVTLKLFDSENTEKMIADAESVAKLLGIKW
CVADYSSYFKDVISYFINSYRKGETPNPCAYCNKTAKFVYLFNEMQKNNAKYIATGHYAK
IIEKNGKKYIGKATNLQKDQSYYLALLDSFQISLLKFPLSEIDSKDETRQIAKEIGLPVS
EKKDSQEVCFLCGRNYREFLSEKVDSKRFKKGYMIYNGKKLREHEGVEFYTVGQRRGLGL
NYHEPLYVKEIDAKKGNIYLAKKEEVVKRGVKLRDVNMVDDRLRVFKAKAKIRYRMNEED
CLVEILPESKALILFEKPQFAPTKGQLAAIYLDDIVVGGGFIYETF
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaaaataatagttgcaatgagtggtggagttgatagctcagttgctgcatat
aaaatgttgaaagaagggtttgatgttgttggtgtcacattaaaattatttgacagtgaa
aacacagaaaaaatgattgcagatgcagaatcagtggcaaaattacttggaataaaatgg
tgtgttgctgattacagtagctattttaaagatgtaatttcttattttatcaatagttat
agaaagggggaaactccaaacccttgtgcatattgtaataaaactgctaagtttgtttat
ctttttaatgaaatgcaaaaaaacaatgcaaagtatattgctacaggtcattatgcaaaa
atcattgagaagaatgggaaaaaatatatcggcaaagcaacaaatttacaaaaagaccaa
tcctactatttagctttattagatagttttcagattagtttattgaaattccctttaagt
gagattgattcaaaagatgaaacaagacaaattgctaaagagataggtttgccagtttca
gaaaaaaaggatagtcaagaagtttgttttttatgtggtaggaattacagagagttcttg
tcagaaaaggtggatagtaaaaggtttaaaaaagggtatatgatttataatggtaaaaaa
ttaagagaacacgagggggttgagttttatacagtaggtcaaagaagaggtcttggatta
aactatcatgagcccttatatgtcaaagaaattgatgctaaaaagggtaatatttatctt
gctaaaaaagaagaagtggttaaaagaggggtgaaattaagagatgttaatatggtagat
gataggttacgggtttttaaagctaaggcaaagataaggtatagaatgaatgaagaggat
tgtttggtggaaatattaccagaaagtaaggctttaatcttgtttgaaaagccacaattt
gctccaactaaaggccaattagcagcaatttatttagatgatatagttgttggtggaggg
tttatctatgaaacattttaa
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