Desulfitobacterium dichloroeliminans: Desdi_0427
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Entry
Desdi_0427 CDS
T02390
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ddl
Desulfitobacterium dichloroeliminans
Pathway
ddl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desdi_0427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddl03021
]
Desdi_0427
03400 DNA repair and recombination proteins [BR:
ddl03400
]
Desdi_0427
Enzymes [BR:
ddl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desdi_0427
Transcription machinery [BR:
ddl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desdi_0427
DNA repair and recombination proteins [BR:
ddl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desdi_0427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGA67970
UniProt:
L0F4K1
LinkDB
All DBs
Position
449361..452726
Genome browser
AA seq
1121 aa
AA seq
DB search
MRGEAYMFYPVKVGTRERWSYSRIREVLDMPNLIEIQQNSYQWFLDEGLREMFRDISPIQ
DFTGNLVLEFIDYSLGEPKYEVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDF
PLMTTKGTFIINGAERVIVSQLVRSPGVYYAESIDPSGKKIYGATVIPNRGAWLEFETDV
NDNIFVRVDRTRKLPATVLIRALGYATNGQITELFDDNEHIRITLERDNTESTEEALVEI
YKRLRPGEPPTVDSARSLLEALFFDAKRYDLAKVGRYKLNKKLNLDIPKEVHHLTKEDII
ASLRRMLNLMAGEGHKDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVDV
ITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFE
VRDVHFSHYGRMCPIETPEGPNIGLIGSLSTYGRINPYGFVEAPYRKVVNSRVTDQIDYL
TADEEEKFVVAQANAPLTEDGTFIDDKIDGRHGPDFVLVAPERIDYMDVSPKQMVSIGTA
LIPFLEHDDANRALMGANMQRQAVPLLRTDAPYVGTGMEYKAAKDSGVCVLATKAGTIER
ATAEEVIIRHDGGTLEKHKLLKYLRSNQGTCINQRPIVLKGERVEASQIVADGPSTDHGE
LALGRNVLIAFMTWEGYNYEDAILISEKLVKEDYYTSIHIEEYEADARDTKLGPEEITRD
IPNVGEDVLKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREV
RDTSLRVPHGEAGKIVDVKVFTRENGDELAPGVNELVRVYIAQKRKISVGDKMAGRHGNK
GVISRIMKQEDMPFLPDGTPVEIVLNPLGVPSRMNIGQVMETHLGRAAKALGIRVATPVF
DGATEADVFETLKKAGLPEDGKSVLYDGRTGEPFDNKITVGYMYFLKLHHLVDDKIHARS
TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEA
IVKGENIPEPGVPESFKVLIKELQSLCLDVRVLSEDDEEIEIREIEEDVTETAKELGIDL
HEELPAPIAHSAREGEAEEFSDEEDEVIEEEAPSFDEDDLE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgaggggtgaagcgtacatgttctatcctgttaaggtagggacgcgggaacgctggagc
tattccagaattcgagaagttctcgacatgccaaatttaatcgaaattcaacaaaactct
tatcagtggtttctcgatgagggcttaagagagatgtttcgggacatttctcccattcaa
gatttcacgggaaatctcgtattggaatttattgactatagcttaggagagcccaaatac
gaagtggaagagtgtaaagaacgcgacgtaacctatgctgcaccactgcgtgtcaaagtt
cgtctcattaataaggagacaggagaagtgaaggagcaagaggtcttcatgggagatttt
cctttgatgaccaccaagggaaccttcatcattaacggagcagagcgggttatcgttagc
cagctggttcgttctcccggagtttattatgctgaaagtattgatcccagcggtaagaag
atctatggtgccactgtcattcccaaccgcggggcttggttagaatttgagaccgacgtc
aatgataatatctttgttcgtgtggacagaacccgtaaacttccggccaccgtcttaatt
cgggccttgggctatgctaccaatggtcagatcactgagctgtttgatgataatgagcat
atccgaattactctagaaagggataatacggaatccaccgaggaagcactagttgagatt
tacaaacgtctgcgtccgggcgaacctccgaccgtggatagtgcgcgctctctcttagaa
gctttattctttgatgccaaacgttatgacctagcgaaggttggtcgctataaattaaat
aagaaattaaaccttgacattcccaaagaggtccatcatttgactaaggaagacattatc
gcttccttgcgtcgcatgctgaatctgatggctggggaaggtcataaggatgatatcgat
catctcggcaatcgtcgactccgctcagttggtgagctactccagaatcaattcaggatt
ggcttatcccgtatggagcgggtggttcgggaacggatgacaattcaagacgtggatgtc
atcaccccgcaggttctcatcaacattcgtccggttgtcgccgctattaaagaattcttc
ggcagcagccagttgtcccagtttatggatcagaccaacccattggctgagctgacccat
aagcgtcgtctcagtgccttgggacctggtggtttgagtcgtgagcgggccggttttgaa
gttcgtgacgttcacttctcgcactatggacggatgtgtccgattgagacccctgaaggt
cctaatatcggcttgattggttccttgagtacctatggtcggattaacccttatggattt
gtcgaagcaccctatcgcaaggtggtcaatagtcgagtgactgatcagattgactatctg
acggctgatgaggaagagaaattcgttgtggcacaggccaatgcgcccttaacagaggac
ggcacctttattgacgataagattgatggtcgtcatggtcctgacttcgtcctagtggca
cccgaacgaattgactatatggacgtttctccgaagcaaatggtttccatcgggaccgct
ttgattcccttcttagagcatgatgatgccaaccgtgccctgatgggtgccaacatgcag
cggcaggcggtacctcttttgcgcaccgatgctccttatgtgggaacgggaatggagtac
aaggcagccaaggattccggagtctgtgtcttagccaccaaggcaggtaccattgagcgt
gccactgccgaggaggtcataattcgtcacgatggcggaaccttagaaaagcataaattg
ttgaaatacctgcgctccaaccaaggaacctgtatcaatcaacgccctatcgttctaaag
ggtgagcgggtagaggctagccaaatcgttgcagatggcccttctacggatcatggtgaa
ctggctctcggtcgcaacgtgctgattgcctttatgacctgggaaggctataactacgag
gatgctatcttgatcagcgaaaagctggttaaggaagattattatacttccattcatatt
gaagaatacgaagccgatgctcgggataccaaactaggacctgaggaaatcactcgcgat
attcctaatgtgggagaagatgttctgaaagacttggacgaacgaggtattatccgcatt
ggtgcggaggttcgccctggggatattctagttggtaaggttacaccgaagggtgaaact
gagctaactgccgaagagcgcctcctgagagccatcttcggtgaaaaagcccgtgaagtt
cgtgatacttccctccgggtacctcacggtgaggccggtaagatcgtcgatgttaaagtc
tttacccgtgaaaacggagacgaactggctcctggggtcaatgaattggttcgtgtttat
atcgctcaaaaacggaaaatctccgtgggggataaaatggccggacgtcacggaaacaaa
ggggttatctcacgcatcatgaagcaagaggatatgcccttcctaccggacggtacccca
gtagaaatcgtcttgaacccgttgggtgttccctcccggatgaacatcgggcaggttatg
gaaactcaccttggtcgggcggctaaagctctcggaattcgtgttgctaccccggtcttt
gacggagctacggaagccgatgtatttgagacgttgaaaaaagccggactgcctgaagac
ggtaaatccgttctttatgacggtaggacaggagaacccttcgacaataaaattactgtc
ggatatatgtacttcttgaaactgcaccatttggtagacgataagatccatgctcgttcc
acaggaccttacagcttggttacgcagcagcctttgggcggtaaagctcaattcggcggt
cagcgtttcggggagatggaggtttgggctctggaagcttatggggcggcctatacccta
caagaaattcttactgtcaagtccgatgacgtggtcggtcgggttaagacctatgaggcc
atcgtcaaaggtgagaatatccctgaaccgggtgttccggaatcctttaaagttctcatt
aaagaattgcaaagcttatgcttggatgttcgtgttctctccgaagatgatgaagagatt
gaaatccgcgagatcgaagaagatgtcactgagacagcgaaagagctaggcatcgatctt
cacgaggaactaccagctcctatagctcatagtgctcgtgaaggagaagcggaggagttc
tctgatgaagaggacgaagtgatcgaagaggaagctcctagctttgatgaggacgacttg
gaatag
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integrated database retrieval system
