Dickeya dianthicola: DDI_0429
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Entry
DDI_0429 CDS
T05141
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ddq
Dickeya dianthicola
Pathway
ddq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DDI_0429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddq03021
]
DDI_0429
Transcription machinery [BR:
ddq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DDI_0429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
ATO31597
LinkDB
All DBs
Position
complement(400449..402284)
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AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITAFVDPNAEEDLAPNTTP
ENAEPADDGIDDDDDESEEDEDDTDDDNSIDPELARQKFAELRDQYEATRVSIKAHGRSH
PTAIDEINKLSEVFKQFRLVPKQFDLLVNNMRAMMDRVRAQERQIMKLCVELCKMPKKNF
VTLFTGNETNRKWFDAALSMGKPWCEKLREVEDDVHRGLQKLQQIEDETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgccgaggtcaatgaccatctgccggaagatatcatcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcgccg
gatgccgatgatctgatgctggccgagaataccgccgatgaagacgctgccgaagcagcg
gcgcaggtattgtccagcgttgaatctgagattggccgcacaaccgatccggttcgcatg
tacatgcgtgagatgggtaccgtcgaactgctgacccgtgaaggggaaatcgatatcgcc
aagcgaatcgaagacggtatcaatcaggtacagtgctccgttgccgaatatccggaagcc
atcacctatctgttggatcaatatgatcgcgtcgaagcgggagaaagtcgcctgtccgat
ttgatcaccgcctttgtggatccgaacgccgaagaagatctggcgccgaataccacgccc
gagaacgccgagccggctgacgacggtatagatgatgacgacgacgaaagcgaagaagac
gaagacgacaccgatgatgacaacagcatcgacccggagctggcgcgtcagaaattcgcc
gaactgcgcgatcagtatgaagcgactcgcgtaagcatcaaggcgcacggccgcagccac
ccgactgctattgacgaaatcaacaagctgtctgaagtgttcaaacagttccgtctggtg
ccgaagcagtttgacctgctggtgaacaacatgcgtgccatgatggaccgcgtgcgtgcg
caggaacgccagatcatgaaactgtgcgtcgaactgtgcaaaatgccgaagaaaaacttc
gtgacgctgttcaccggcaatgaaaccaatcgtaaatggttcgatgctgcgctttcaatg
ggcaaaccctggtgtgaaaaactgcgcgaagtggaagacgacgtgcatcgcggtctgcag
aaactgcaacagatcgaagacgaaactggtttgaccattgaacaggtcaaagacatcaac
cgtcgtatgtcgattggcgaagccaaagctcgccgcgccaagaaagagatggtggaggcg
aacctgcgtctggttatctcgatcgccaagaaatacaccaaccgcggcctgcagttcctg
gatctgattcaggaaggtaacattggcctgatgaaagcggtagacaaattcgaataccgc
cgcggctacaagttctccacctacgccacctggtggattcgtcaggcgatcacccgttcc
atcgccgaccaggcgcgcaccatccgtattccggtgcatatgattgagactatcaacaaa
ctcaatcgtatttcccgccagatgctgcaggaaatgggccgcgagccgacgccggaagag
ctggccgagcgtatgctgatgccggaagacaagatccgcaaggtcttgaagatcgccaaa
gagccgatctctatggaaaccccgatcggtgatgatgaagattcacatctgggggatttc
atcgaagataccacgctggaactgccgctggattccgccacctcggaaagcctgcgttcc
gccacccacgacgtgctggccggcctgaccgcacgcgaagccaaagtgctgcgtatgcgt
ttcggtatcgacatgaataccgaccatacgctggaagaagtcggcaaacagttcgacgtg
acccgcgagcgtattcgtcaaattgaagcaaaagcgctgcgtaaattgcgccacccgagc
cgttccgaagtacttcgtagcttcctggacgattaa
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