Deinococcus deserti: Deide_06920
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Entry
Deide_06920 CDS
T00880
Symbol
mfd
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ddr
Deinococcus deserti
Pathway
ddr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Deide_06920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddr03400
]
Deide_06920 (mfd)
Enzymes [BR:
ddr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Deide_06920 (mfd)
DNA repair and recombination proteins [BR:
ddr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Deide_06920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Motif
Other DBs
NCBI-ProteinID:
ACO45550
UniProt:
C1D126
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All DBs
Position
853734..856859
Genome browser
AA seq
1041 aa
AA seq
DB search
MTLAAPNLSKLLDPAPPGNLLLLPQIARAALFAAYPGPAVLLTTPDRLPSYASSGVLGAP
VSVNPGLRDWDARHEHVVLDVNTALDLFPSNPEEHALTLKVGGTYPREALLSRLERLGYE
RGEEPGFELRGDTLELRLEPGTGLPVDAEEGVWVRAEFFGDELDTLRTLAPGELTGAKIT
SFTLEPTGEYLTDVKWDATRLDLLPGRVFLDSPEFYASSLGVLAETLWPRLAAREVTSFG
RAPLDLPDLHTGLQTLGFYRARLSDLERDVLEWRGAGYRVFILVRHDRTAAYLADKLLGT
HEIPWLSVPRLPEGGLGFLRAAGEGGFVIPEHRTVVITEDLIYGFQGGSALRGKKLTGRP
VTDALGLHVGDFLIHPEHGIGRFEGLETRKVLGVTRDYLNIEYRGGARLSVPIEQLPVLR
RHPGTTDDPPVLSSFDKKDWAKAKERARKNAEEVAGKLLVQYAARQVTPGNAFPPQPEWD
EQIEQNFKFELTSDQKISLKETMRDLEKPNPADRLISGDVGFGKTEVALRAAHRVVGHGR
QVAILVPTTLLAEQHTSTFVERFKGLPVRVEGLSRFTSPQQARSILNDLKAGKVDILIGT
HRLLSGDIEFKDLGLIIVDEEHRFGVSQKEKLRALRGLPAMTDGKLELPPEARAVDTLAL
SATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPVTVRDAILNEIERGGKVFY
IHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETG
LDIPEANTILIERADRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIADL
QDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTELLSEAVAKLKGEKLEAPPS
VSIDLPVSARLTPEYFEHDEEARIATYGRLSEARTLQAISRVERDLRKKYGPPAPEVQNF
IDLAKLRLTALAKRVLSVGETMTHLQVTFAYKALDYDAAGLKRFPLKTEVQTFPPSVKLE
KRGIRPDDYARTLIDLLGYFG
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gtgacccttgccgcgcccaatctgtcgaaactgcttgaccctgcgccgccgggtaatttg
ctgctgctgccgcagatcgcgcgcgccgcgttgttcgccgcctatcccgggccggcagtc
ctgctgaccaccccggaccggctcccgagttatgcctcttccggggtgctgggtgcgccg
gtaagtgtgaacccgggcctgcgcgactgggacgcgcggcacgagcacgtcgtgcttgac
gtgaacacggccctggacctgtttccaagcaacccggaagaacatgccctgaccctgaag
gtgggcgggacgtacccgcgtgaagcgctgctgtcccgcctggaacggctgggctacgaa
cgcggcgaggaacccggctttgagttgcgcggggacacgctggaacttcgcctcgagccg
ggtaccggactgccagtcgacgctgaggaaggtgtgtgggtgcgcgctgagttctttgga
gacgaactcgataccctgcggactctggcacctggggaactgaccggagcgaagatcact
tcgttcacgctggagccgaccggagagtacctgactgacgtcaagtgggacgccacccgg
ctggacctgctgccggggcgggtgttcctggattccccggagttttatgcctcttcgctg
ggtgttctggccgagacactatggccccgcctcgctgcgcgtgaagtcaccagttttggc
cgggctccgctggatctgccggacctgcacaccggcctgcagacgctgggcttctaccgc
gcccgcctgtcggatctggagcgcgacgtgctggagtggcgcggcgccggctaccgggtg
ttcatcctggtgcgtcatgaccgcacggctgcctatctggccgacaagcttctgggcacg
cacgagattccgtggctgagtgttccccgactgcctgagggcgggctgggcttcctgcgt
gctgcgggcgagggcggcttcgtgattcccgagcaccgtacggtcgtgattactgaggac
ctgatctatggttttcagggcggcagcgcgctgcgcggcaagaagctcaccggccggccg
gttacggacgcgctgggcctgcacgtgggtgacttcctgattcatcccgagcacggcatc
ggccgcttcgaggggctggagacccgcaaggtcctgggcgtcacgcgcgactatctgaac
atcgagtaccgcggcggcgcgcgcctgagcgtgcccatcgaacagctgccggtcttgcgc
cgccaccccggcaccaccgacgacccgccggtcctgagttcctttgacaagaaggactgg
gccaaagccaaggaacgcgcccgcaagaatgccgaggaagtggccggtaagctgctggtg
cagtacgccgcgcggcaggtgacccccggcaacgcctttccgccccagccggaatgggac
gagcagatcgagcagaacttcaagtttgagctgacgagtgaccagaagatctcgctgaaa
gaaaccatgcgggatctggaaaagcccaaccctgccgaccgtctgatcagcggggatgtc
ggcttcgggaagaccgaggtagccctgcgtgccgcacaccgcgtggtgggccacggccgg
caggtcgccattctggtgcccaccacgctgctggccgagcagcacacctcgaccttcgtg
gagcgcttcaaggggctgccggtgcgggtcgagggactgtcacgctttacttctccgcag
caggccaggagcatcctgaatgacctgaaggccggcaaggtcgacatcctgattggcacc
caccgcctgctgtccggggatatcgagttcaaggacctgggcctgatcattgtggacgag
gagcaccgcttcggcgtgtcgcagaaggaaaagctgcgcgccctgaggggtctgccggcc
atgaccgacggcaagctggagctgccgcccgaggcccgcgcggtggacacgctggcgctg
tcggccacgcccattccgcgcacgctgtacatgagcatggtcggcctgcgcgacatgagt
tccatccagacgccgcccaagggccgcaagcccattcagaccatcctcgcaccctttgac
ccggtcacggtccgcgacgcgatcctcaatgagatcgagcgtggcggcaaggtcttctac
attcatgaccgcattgccagcatcggcgcacgcagcctgtacctgcgcaacctggtgccc
gaggcccgcattggggtagctcacggccgcatgaatgaagaggagctcgaggaaatcatg
ctgggtttcgagcagggcgctttcgatgtgctgctttcgaccaccatcgtcgagacgggc
ctggacattccggaagccaataccatcctgatcgagcgggccgaccgcctgggcctggcg
cagctctaccagctgcgtgggcgcgtgggccgccgcgcgcagacggcctacgcctacctg
ttctacccgccgcgcatgaccgagaatgcccagcgccggctgtgggccattgctgacctg
caggacctgggcagcggacacctgctggccgaaaaggacatggaaatccgcggggtgggc
aatatcctgggtgaggaacagcacggacacgtgcaggcggtgtccatcgacgtgtatacc
gaactgctctcggaggctgtggccaagctcaagggggagaagctggaagctccgcccagc
gtctccattgacctgccggtgagtgcccgcctgactccggagtactttgagcacgacgaa
gaagcccgcatcgccacctacggccgcctgtccgaggcgcggaccctgcaggccatcagc
cgtgtggagcgcgacctgcgcaagaagtacggtccgccggcgccggaggtgcagaacttc
atcgatctcgccaagctgcgcctgacagcgctggccaagcgggtcctgagcgtgggggag
accatgacccacctgcaggtgacctttgcctacaaggcgctggactacgacgctgccggg
ctcaagcgcttccccctcaaaaccgaggtgcagacctttcccccgtccgtgaagctggaa
aagcgtggcatcaggcctgacgattacgcccgcacactgattgacctgctggggtacttc
gggtga
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