Dehalobacter sp. CF: DCF50_p706
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Entry
DCF50_p706 CDS
T02279
Name
(GenBank) ATP-dependent RNA helicase YxiN
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
dec
Dehalobacter sp. CF
Pathway
dec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCF50_p706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dec03019
]
DCF50_p706
03009 Ribosome biogenesis [BR:
dec03009
]
DCF50_p706
Messenger RNA biogenesis [BR:
dec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCF50_p706
Ribosome biogenesis [BR:
dec03009
]
Prokaryotic type
rRNA helicases
DCF50_p706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFV04713
UniProt:
K4LDW1
LinkDB
All DBs
Position
complement(715272..716723)
Genome browser
AA seq
483 aa
AA seq
DB search
MNQATFQHYPLSPEILKALQLLNYDKPTNVQQQVIPLILAQKDVIVKSQTGSGKTAAFAI
PLCQMVDWEENKPQALIITPTRELAIQVKEDLFHIGRFKRLKIAAVYGKSPFYYQEKELK
QKTHIVVGTPGRLIDHLQKGTLDTSYIKYLVIDEADELMNMGFLEQTETILGSLSADRVT
ALLSATMPSDVRTLCDHYLREPVYVETQEETSAAERISQERYLIARQDKDKIKLLKDLSV
TENPDSCLIFCNTKHQVDEVYAELKLLDYPCAKIHGGMEQGHRLSVMDDFKRGYFRYLIA
TDVAARGIDIEDISLVINFDLPQEKESYVHRIGRTGRLNKNGKAISFVTEEDDSYLQDIQ
KYIGQEIPLKQRPSQDTVRNAEVDFQEKITVLPDNKAMKGTRINLEIMKLQINAGKKSKI
RPADIVGTLTNIAGMTAADIGIINILDELSYVEILNFKGPLVLEALQTTSLKGKLRKVRK
VNR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggctacttttcagcattatccgttaagtccggaaatattaaaagcccttcag
ctgctaaactatgacaagcctacgaacgtccagcagcaggtcattccgcttatcctggcg
caaaaagatgtgattgttaaatctcagaccggcagcggcaagacggctgcttttgctatt
ccgctttgccagatggtggattgggaagaaaataaacctcaggccctgatcatcacgcca
acgagagaactggccatccaggtcaaagaggatctgtttcatatcggccgttttaaaaga
ctaaaaattgctgcagtatacggcaaatctcctttctattatcaggagaaagagctgaag
caaaaaacgcatattgtggtgggaacgcctggccggctgatcgatcatcttcagaaaggg
acgctggatacttcttatatcaaatacctggttattgacgaagcggatgaactgatgaat
atgggctttttggaacagacggagaccatccttggcagcttgtctgccgaccgcgtaaca
gccctgctgtcggccacgatgccttctgatgtcagaacactgtgtgatcattatttgcgc
gagccagtctatgtagaaacgcaagaagaaacatccgctgcggaaagaatctcccaggaa
agatacctcattgccagacaggataaggataaaataaagcttcttaaagatctttcagtc
actgagaaccccgatagctgcctgattttctgcaataccaaacatcaggtggatgaggtc
tatgcggaattgaaattgctcgattatccctgcgccaaaattcatggcggtatggaacaa
gggcaccgcctgagtgtcatggatgattttaaacggggttattttcggtacctgattgca
acagatgtggcagcccgggggattgacatcgaagatatttcactcgtcattaactttgat
ctgccgcaggaaaaggaaagctatgtacaccggattggcagaacagggcgtttgaataaa
aacggcaaagcaatctcctttgtgaccgaagaagatgacagttacctgcaggatatacag
aaatatattggacaggagatcccactgaaacaaagaccgtctcaggatactgtccgcaat
gcagaagtcgactttcaggagaaaataaccgttttgccggataataaagccatgaaaggc
acccggatcaatttggaaatcatgaagctccagatcaatgccggaaagaaatccaagatc
cggccggcggatattgtgggcacattgacgaacattgcgggtatgactgcggctgacatc
gggattatcaatattctggatgaattgagttatgtggaaatcctgaactttaaagggcca
cttgtccttgaagccttgcaaacaacatcgctcaaaggtaaactaaggaaagtaagaaaa
gtgaatcgctaa
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