Dechloromonas sp. TW-R-39-2: GBK02_03770
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Entry
GBK02_03770 CDS
T08942
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GBK02_03770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dech03021
]
GBK02_03770 (rpoB)
03400 DNA repair and recombination proteins [BR:
dech03400
]
GBK02_03770 (rpoB)
Enzymes [BR:
dech01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GBK02_03770 (rpoB)
Transcription machinery [BR:
dech03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GBK02_03770 (rpoB)
DNA repair and recombination proteins [BR:
dech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GBK02_03770 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Ribosomal_L12
Motif
Other DBs
NCBI-ProteinID:
QRM18573
LinkDB
All DBs
Position
769405..773688
Genome browser
AA seq
1427 aa
AA seq
DB search
MTYSFTEKKRIRKSFAKRANVLDVPFLLATQLESFTAFLQADVPAEKRKNEGLQAAFTSI
FPIVSHSGNARLEFVSFMLGEPAFDVTECHQRGLTYASSLRAKVRLVIMDREAPDTVKEV
KEQEVYMGEIPLMTTNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDTLFFRVDRRRKMPVTTLLKAIGMSSEEILDQFFDFDTFLLGKEKV
EFTLVPERLRGEIARFDFVAPDGKVIVAKDKRITAKHIRDIAAAGLNQIAVPEEFILGRV
IAKNIIDKATGEVVANANDEITETLLANLREADITTLETLYTNELDRGAFISNTLRADET
ASRQAARVAIYRMMRPGEPPTEESVEILFNGLFYSDERYDLSGVGRMKFNRRLSRQDVTE
FKVMVKSLASKAEAALKNLAEGSGFSLPAIQDLVSLMPYGARALCENMTEADANALAAKI
KPLGANAEVREQLTLSPRDIVEVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFR
AGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEIT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARVNDYG
FIETAYRKVVDSKVTNEIEYLSAIEEGNYVVAQANAGLDDAGCLNDDLVTCREKGETILA
EPSRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIE
RTVAVDSGTAVVARRGGMVDYVDAGRVVVRVNDNETVAGEVGVDIYNLVKYTRSNQNTNI
NQRPLVRVGDKIARGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAE
DRYTSIHIEELTVVARDTKLGPEEITRDIASLGETQLSRLDESGIVYIGAEVVAADVLVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRA
QSIIDEHLRHYKLDLADQMRIVERDAFERVGRLIVGKKANGGPKKLAKGSLIEQSYLDGM
DPHHWFDIRVADEEVAQQLEQVKEGLEQARKDFDVAFEGKRKKLTQGDELPPGVQKMVKV
YVAVKRRLQPGDKMAGRHGNKGVVSRILPVEDMPHMEDGSPVDIVLNPLGVPSRMNVGQI
LEVHLGLAAKGLGHKIGAMLRAQATAKELRPFLDQIYNASGKAENLEELTDGEIVEMAGN
LTSGVPFATPVFDGAKDSEIKAMLALAGMPSSGQMTLFDGRTGEAFERQVTVGYMHYLKL
HHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKS
DDVNGRTKVYENIVKGEHKIEAGMPESFNVLVKEIRSLAIDIDLERY
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcctttaccgagaagaaacgcatccgcaaaagcttcgccaagcgcgccaac
gtgctcgacgtacctttcctgcttgcgacccagctcgagtccttcactgctttcctgcaa
gccgacgtgcccgccgaaaagcgcaagaacgagggcctgcaggctgcgtttacctcgatt
ttcccgatcgtttcccattccggtaatgcccgccttgaattcgtcagcttcatgcttggc
gagccggcattcgatgttactgaatgtcatcagcgcggcctgacctacgcctcgtcgttg
cgcgctaaagtgcgcttggtcatcatggatcgcgaggcacctgataccgtgaaggaagtg
aaggagcaggaagtgtacatgggcgaaattccgctcatgaccacgaatggctctttcgtg
atcaacggtacggaacgcgttatcgtttcccagttgcatcgttcaccaggcgtgttcttc
gagcacgaccggggcaagacgcacagttccggcaagctgcttttctctgcacggatcatt
ccgtatcgcggctcgtggctggactttgaattcgacccgaaggacacactgttcttccgt
gttgaccgtcgtcgcaagatgcctgtgaccacgctgctcaaggccatcggcatgagctcg
gaagaaattcttgatcaattctttgattttgacaccttcctgctcggcaaagagaaggtt
gagttcacgctcgttcctgagcgtctgcgtggtgaaatcgcccgcttcgatttcgtcgct
ccggatggcaaggtcattgtcgccaaggacaagcggattaccgccaagcacatccgcgat
atcgctgcagcaggtctgaaccagatcgccgtcccggaagagttcattctcggccgcgtc
atcgccaagaacatcatcgacaaggcaaccggcgaagttgttgccaatgccaacgatgaa
atcaccgaaacgctgttggccaatctgcgcgaagcagatatcaccacgcttgagacgctc
tacacgaacgaactcgaccgcggtgcattcatttccaacaccttgcgtgccgacgaaacg
gcttcccgccaggccgcccgcgtagccatctaccgcatgatgcgtccgggtgagccaccg
accgaagagtctgtcgaaatcctcttcaacggcttgttctactctgacgaacgctacgac
ctctccggcgtcggccggatgaagttcaatcgccgcttgtcgcgtcaggatgtgaccgag
ttcaaggtcatggtcaagagcctggcctccaaggctgaagctgcattgaaaaacctggcc
gaaggctcgggcttctcgctgccggcgatccaggatctggtcagtctgatgccgtacggt
gctcgtgcactgtgcgaaaacatgaccgaagccgatgccaatgcattggctgccaagatc
aagccgctcggcgccaatgccgaggttcgcgagcaactgacgttgtcgccgcgcgatatc
gttgaagtcatcaagatcctggtcgaactgcgcaatggccgcggggaaatcgacgacatc
gaccacctcggcaaccgccgtgtccgttccgttggcgaactggccgaaaaccagttccgc
gccggtctggttcgcgttgagcgcgccgtcaaggagcgcctgtcgcaagccgaatccgac
aacctgatgccgcacgacctgatcaatgccaagccgatcagtgctgcaatcaaggaattc
tttggctccagccagttgtcgcagtttatggaccagaccaacccgctgtcggaaattacg
cacaagcgtcgtgtttccgcacttggcccgggcggtttgacccgtgagcgtgccggcttc
gaagtgcgcgacgtgcatccgacccactacggtcgtgtttgcccgatcgaaacgccggaa
ggtccgaacattggtctgatcaattcgctggctctctttgcccgcgtcaatgattacggc
ttcatcgaaacggcttaccgcaaggtggtcgattccaaggtgaccaacgaaatcgagtac
ctctcggccattgaagaaggtaactacgtggttgcccaggccaatgccggtctcgatgat
gctggctgtctgaacgatgatctggtgacttgccgtgaaaagggtgaaaccatcctggct
gaaccgtcacgcgtccagtacatggacgttgcgccgggtcagatcgtttccgttgctgcc
tcgctgattccgttccttgaacacgatgacgcgaaccgcgcattgatgggcgccaacatg
cagcgtcaggctgttccttgcctgcgtccggaaaaggcgctggtcggtaccggcatcgaa
cgcactgttgcggtcgactccggtacggccgtcgttgcccgccgtggcggtatggttgat
tacgttgatgccggccgtgttgtggtccgtgtgaacgacaacgaaaccgttgctggtgaa
gtcggcgtcgacatctacaatctggtcaagtacacccgttccaaccagaacaccaacatc
aatcagcgtccgctggtccgcgtcggcgacaagatcgctcgcggcgatgtcgtggctgac
ggcgcatcgactgacaagggcgagctggctctgggtcagaacatgttgatcgccttcatg
ccgtggaacggctacaacttcgaagactcgattctgatctccgaacgcgtcgttgccgaa
gaccgctacacctcgatccacatcgaggaactgacggttgttgctcgcgacacgaagctc
ggtcctgaagaaattacccgcgacatcgcctcgcttggtgaaacccagctctcccgcctg
gatgaatcaggcatcgtctacatcggtgctgaagtggttgccgctgacgtgctggttggc
aaggtcacgccgaagggcgaaacccagctgacgccggaagaaaagctgctgcgcgccatc
ttcggtgaaaaggcttcggacgttaaggacacctcgctgcgcgtgccgtcgggtatcgcc
ggtaccgtcatcgacgttcaggtgttcacccgcgaaggtatcgagcgtgacaagcgtgcc
cagtcgatcatcgacgagcatctgcgtcactacaagctcgacctggctgaccagatgcgt
attgtcgaacgcgatgcgttcgagcgtgtcggtcgtctgatcgttggcaagaaggccaat
ggcggcccgaagaagctggccaagggttcgttgatcgagcagtcctacctggacggcatg
gacccgcaccactggttcgacatccgcgttgccgatgaagaagttgcccagcagctcgaa
caggtcaaggaaggcctcgagcaggctcgcaaggacttcgacgtggctttcgaaggtaag
cgcaagaagctgacccaaggcgacgaactgccgccgggcgtccagaaaatggtcaaggtc
tatgtcgccgtcaagcgtcgcctgcagccgggtgacaagatggccggtcgtcacggtaac
aagggtgtggtttcccgcattctgccggtcgaagacatgccgcacatggaagatggcagt
ccggtcgacatcgtgctgaacccgcttggcgtgccgtcgcggatgaacgtcggtcagatt
ctcgaagttcacctcggtcttgccgccaagggcctcggccacaagatcggtgccatgctg
cgtgcccaggcgaccgccaaggaactgcgtccgttcctggatcagatctacaacgccagc
ggcaaggctgaaaaccttgaagaactgacggatggtgaaatcgtcgaaatggccggtaac
ctgacgtcaggtgtgccgttcgctacgccggttttcgatggcgccaaggacagcgaaatc
aaggccatgctggctttggctggcatgccttcgtccggtcagatgaccctgtttgatggc
cgtaccggcgaagcattcgagcgccaggtgacggttggctacatgcactacctgaagctg
catcacttggtcgatgacaagatgcacgctcgttcgaccggcccgtactcgctcgttacc
cagcagccgctgggcggcaaggcgcagttcggtggtcagcgcttcggtgaaatggaagtg
tgggcactcgaagcctacggcgcatcttatgtgctgcaggaaatgttgaccgtgaagtcc
gacgatgtgaatggccgtaccaaggtgtacgaaaacatcgtcaagggcgagcacaagatc
gaagccggcatgccggaatccttcaatgtgctggtcaaggaaattcgttcgctggcgatc
gatatcgatctggaacgttactga
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integrated database retrieval system
