Dehalobacter sp. DCA: DHBDCA_p1895
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Entry
DHBDCA_p1895 CDS
T02278
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ded
Dehalobacter sp. DCA
Pathway
ded03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ded00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DHBDCA_p1895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ded03021
]
DHBDCA_p1895 (rpoB)
03400 DNA repair and recombination proteins [BR:
ded03400
]
DHBDCA_p1895 (rpoB)
Enzymes [BR:
ded01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DHBDCA_p1895 (rpoB)
Transcription machinery [BR:
ded03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DHBDCA_p1895 (rpoB)
DNA repair and recombination proteins [BR:
ded03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DHBDCA_p1895 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFV02921
LinkDB
All DBs
Position
complement(1906656..1910096)
Genome browser
AA seq
1146 aa
AA seq
DB search
MVNPIKVGTRERASYARLREVLDMPNLIEIQQNSYEWFLKEGLREMFRDISPIQDFTGNL
VLEFIDYSLGDPKYEVEECKERDVTFAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDK
GTFIINGAERVIVSQLVRSPGVYYSETIDTSGKKLYGATIIPNRGAWLEFETDINDNIFV
RVDRTRKLPATVLVRALGYSTNGRILEAFDDNENVKITLERDNTESTEEALVEIYKRLRP
GEPPTVESARSLLESLFFDPRRYDLAKVGRYKLNNKLGLDIPKNIRHLTSEDIIASISRM
LKIINGEGHIDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDIEGITPQVL
INIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHH
SHYGRMCPIETPEGPNIGLIGSLSTYGRINEYGFIEAPYRKVENGKVTDEIHYLTADEEE
KYIIAQANAAVGENGEFLSEKIEARHGEDFVLVPPVNIQYMDVSPKQMVSIATALIPFLE
HDDANRALMGSNMQRQAVPLLRTDAPYIGTGMEYKAAVDSGVCLVSPKEGTALRVTSDEI
IIQNNDGTTTRNRLLKYTRSNQGTCINQKPIVVKGQRIDAGQVIADGPSTDNGELALGRN
VLVAFMPWEGYNYEDAILISEKLVKEDYFTSIHIEEYEADARDTKLGPEEITRDIPNVGE
DVLKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLR
VPHGEAGKVVDVKVFKRENGDELAPGVNQLVRVYIAQKRKISVGDKMAGRHGNKGVISRI
MRQEDMPFMPDGTPIEIVLNPLGVPSRMNIGQVLETHLGWAAKALGMYIATPVFDGARED
DVFDTLRKAGLPGHGKSVLYDGRTGEPFDNEVTVGYMYMLKLHHLVDDKIHARSTGPYSL
VTQQPLGGKAQFGGQRFGEMEVWALEAYGASFTLQEILTVKSDDVVGRVKTYEAIVKGEN
IPEPGVPESFKVLIKELQSLGLDVSVLSEEDQEIEIKDLDDDVTEVAHELGMDDQYSVID
ANDESGIGYDNEDETLDEDLDGDLNDKTEDFPVLSVPESDLGNDLVNDLDNDFSDNMDDD
FDPDYK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatcctatcaaagttggaacaagagaacgggcaagttatgcgaggcttcgggaa
gttctggatatgcccaacttaatcgaaattcaacagaattcctacgagtggtttctgaag
gaagggcttcgcgaaatgtttcgcgacatttccccgattcaggattttaccggaaatctg
gttttggaattcatagactacagcctcggcgatccaaaatatgaggtcgaggaatgcaaa
gaacgtgacgttacgtttgcagcgcctctcagagtcaaagtacgccttattaataaggaa
acaggagaggttaaggagcaggaagtgttcatgggggactttcccctgatgaccgataaa
ggcaccttcattattaatggtgcggaacgtgttattgtcagtcagttggtaagatcgccc
ggcgtttattattctgaaacaatcgacaccagcggtaaaaagctttacggcgcaacaatt
attccgaaccgtggtgcctggctggaatttgagacagatattaatgataatatttttgtc
cgggttgacagaacccgtaaactaccggctactgtactggtcagagcccttggctattca
accaatggccggatcctcgaagcgttcgatgacaatgagaacgttaaaattacgctggaa
agagacaatacggaatcaacggaagaagcgctggttgagatttataaacgtcttcgtcct
ggagaaccgcctacggtggagagtgcccgcagtcttctggaatccttgttctttgatccc
agaagatatgatctggcaaaagtaggccgttataagctgaacaacaaactgggtctggat
attcccaagaacatacggcatttaacatccgaggacatcatcgcatcgatttctcggatg
cttaaaataattaatggtgaaggacatattgatgatattgatcaccttggcaacagacgt
ttgcgttcggttggcgagcttcttcagaatcagttcagaatcggtctctcccgtatggag
agagtggtgagagagagaatgacgattcaggacattgaggggattacacctcaggtgctg
atcaatatacgtccagtcgtggccgcaattaaagagttttttggaagcagccagttatca
cagtttatggaccagaccaatccgctggccgagcttacgcataaacgccgtctcagcgcg
ctgggacctggtggtttaagcagagagagagccggatttgaagtgcgtgacgtgcatcat
tcccactatggccggatgtgcccgattgaaacgcctgagggtccgaacattggtttgatt
ggttcactcagcacatatggacgcattaatgagtatggctttattgaggcaccttaccgc
aaagtagaaaatggcaaagtgacggatgagatccattacttaacagctgatgaagaggaa
aaatatattattgcccaggccaatgccgctgttggtgaaaatggggagtttttaagcgaa
aagatcgaagcgcgccacggtgaagatttcgtcctggttccgccggtaaacattcagtat
atggacgtttcgccgaagcagatggtatcgattgcgaccgccttgattccattcctcgag
catgacgatgctaaccgtgctctgatgggttccaacatgcagcgtcaggctgtgcctcta
ctcagaacagatgcaccgtatattggcaccggcatggagtataaggctgctgttgattcc
ggtgtttgtctggtttctccaaaagaaggaactgctttacgggttacttccgatgagatc
atcattcaaaacaatgacggtacaacaacccggaatagacttttgaaatacacgcgcagc
aaccagggaacctgtatcaatcagaaaccgattgttgtcaaaggccagagaatcgatgct
ggtcaggtaattgccgacggcccgtcaacagataacggagaacttgccctcgggcgaaac
gttctggtagcgtttatgccctgggaaggatacaactatgaggatgctattctgatcagc
gagaagctggtgaaagaagattattttacgtccattcatattgaggaatacgaagcagat
gcccgggataccaaacttgggcctgaagagattaccagagatattccaaacgtcggagaa
gatgttttgaaagatcttgacgaacgtggtattatccggatcggtgccgaagtgcgccct
ggagatatcttagtgggcaaggttactccgaaaggggaaacagagcttacggctgaagaa
cgcctgctaagagcaatctttggtgagaaagccagagaagtcagggatacttctttacgt
gttccgcatggcgaggccggaaaagttgttgatgttaaagtatttaagcgcgagaacggc
gatgaactggcccctggggtcaaccaactcgtaagagtctatattgcccagaaacgtaag
atatccgtcggcgataaaatggctggaagacacggaaacaaaggggttatttccagaatt
atgcgccaggaggatatgcctttcatgccggacggcacgccgattgaaatcgttctgaat
ccgctcggtgttccatctcgtatgaatatcggacaggttctggagacccatcttggttgg
gcggcgaaagcactgggcatgtatattgccacaccggtttttgacggagccagagaagat
gatgtctttgataccttgagaaaggccggacttcccggacatggaaaatccgttctttat
gacggccgtaccggtgagccttttgataatgaagttactgttggctacatgtatatgctg
aaacttcaccatcttgttgatgacaagatccatgcccgttctacaggtccgtactcgctg
gtcacccagcagccgctcggcggtaaagcgcagttcggcggtcaacgcttcggagagatg
gaagtttgggcacttgaagcttatggtgcatcgtttacgctgcaggagatacttaccgtt
aaatccgatgatgtggtaggtagggtcaagacctatgaagcaattgtcaaaggtgagaat
attcctgagccgggcgtgccagaatcgtttaaggtactcatcaaggaattgcagagcctt
ggacttgatgtttccgtactttcggaagaagatcaggaaattgaaattaaggatctggat
gatgatgtcacagaagttgcccatgaactgggaatggatgatcagtattccgtgattgat
gccaatgacgaaagcggcattggctatgataatgaagatgagactcttgatgaagatttg
gatggcgatttgaatgacaaaactgaagatttccctgtcctgagtgttcccgagtctgac
cttggtaatgatcttgttaatgatctggacaatgatttcagcgacaacatggatgacgat
tttgatccagattacaagtaa
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