Desulfovibrio sp. G11: CNY67_04720
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Entry
CNY67_04720 CDS
T05183
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
def
Desulfovibrio sp. G11
Pathway
def03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
def00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNY67_04720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
def03021
]
CNY67_04720 (rpoB)
03400 DNA repair and recombination proteins [BR:
def03400
]
CNY67_04720 (rpoB)
Enzymes [BR:
def01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CNY67_04720 (rpoB)
Transcription machinery [BR:
def03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CNY67_04720 (rpoB)
DNA repair and recombination proteins [BR:
def03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CNY67_04720 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Hydin_ADK
Motif
Other DBs
NCBI-ProteinID:
ATD80792
LinkDB
All DBs
Position
complement(1043634..1047770)
Genome browser
AA seq
1378 aa
AA seq
DB search
MGQLTKQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDF
NKTASLEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQ
DIYFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMR
GSWLDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFW
EVRKELYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLA
GDVADPKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPD
QLKAQEEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLR
TLTDNDILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKER
MSLQEISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGL
TRERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGR
VTDEVLHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPS
QMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVA
PADGKIEYVDADRIVVAYEGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKK
GQILADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVV
ARDTKLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEE
KLLRAIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQK
EADHMRALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSG
LFKSKEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKL
SVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWG
AKELGRQLAELLDSGAAMQVLRDEVKSIFSSDDINALVDEMDDEEFKASVSKLRNGIVTK
TPVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVDEKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVK
MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKKPKRTGYMREREDEA
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgggccagctcaccaaacagttcggcaagatcaagatctccctccctatcccccatctg
ctaaatctgcagatagactcatatgaaaagtttcttcaggaaggtgttccagaagccgaa
cgccgccctgacgaaggacttgagggcgtttttcatacggtctttcctattgaagacttt
aacaaaaccgccagtctggaatttgtcagctatgaaataggcgagccaaaatacgaccag
gccgaatgtatttcaaaaggcctgacgtacgaagcccccatgcgcattaaagtgcgcctt
gtggtgtatgatgccgacgaagcttcgggcaaccggactattcgcgacatcaaggagcag
gatatctatttcggtaccctgcccctcatgaccgaaaagggcacctttatcataaacggc
actgaacgcgtcatcgtcaaccagttgcagcgttcgcccggcatcattttcgagcacgac
ggcggcaagacgcataccagccgcaaggtgctctattcgtgccgggtcatccccatgcgc
ggctcttggctggacttcgactttgaccacaaggacattctctacgtccgcatcgaccgc
cgccgcaaaatgcccgccaccatcctgttcaaggcgatgggcatgagcaaggaacagatc
cttgactacttctatacgcaggaaacctaccgtctggaagaacgcaacaccattttctgg
gaagtgcgcaaggaactgtaccgcaaggacaacgcctatgccgacatcgtcgacagcgaa
ggcaatgtcatcgtcaaggccggcaagcccattaccaaacgcagctggcgtcttatctgc
gaggcgggcatcgaagccatcgaaatgcgccccgataccctggacggcatgttcctggcc
ggagacgtggcggatcccaagactggcgaactgctggccgaggctgcggacgaaatcact
cccgggctgctggaccgcatgcgtgatgcgggcatcaaccgcgtgagcgtgctgcatacc
aagggcaacgacacctcttcctccatccgagacaccctcatgctggaccgcattccggac
cagctgaaggcgcaggaggaaatataccgtcgcctgcgtccctcttcgccgcccacggcg
gaaattgcggccagtttctttgacaacctgttccgcaatcccgactactacgatctgtcg
cccgtgggtcggtacaagctcaaccagcgcctcagcctggacgagccttccgatctgcgc
accctgacggacaacgacattcttacggccatcaaggtgctggtccacctcaaggacagc
cacggccctgccgacgatatcgaccatctcggcaaccgtcgcgtgcgtctggtaggcgaa
cttgtggaaaaccagtatcgtatcggccttgtccgtatggagcgcgccatcaaggagcgc
atgagcctgcaggaaatctccacactcatgccgcacgaccttatcaaccccaagcctgtg
gctgccgtgttgaaggaattcttcggcacatcgcagttgtcgcagtttatggaccagacc
aactccctttccgaagtgacgcacaagcgccgcctctcggccctgggacccggcggcctg
acccgtgaacgcgcaggttttgaggtgcgcgacgtgcatacctcgcactatggccgcatc
tgccccattgaaacgcccgaaggtcccaacatcggccttatcgtttcgctgaccaccttt
gccaaggtcaatgactacggcttcattgaaacgccctatcatgtggtgcgtgaaggccgg
gtcaccgatgaagtgctccacctcgacgcctcccgcgaaggggatcaggtggtggcgcag
gccaacgcactgctggacgagcagggcaaccttgtggacgaattcgtcacagtgcgcgtc
aagggcgaagtggaaatgcgccatcgcgacgaagtgacccttatggacatttcgcccagc
cagatggtttccatctcggccgcgcttatccccttcctggagcatgacgacgccaaccgc
gcgctcatgggttccaacatgcagcgtcaggccgtgcccctgctccggtccgaaaaaccc
cttgtgggaaccggcatggaagtggacgtggcccgcgactccggtgcatgcatagttgct
ccggctgacggcaagatcgaatacgtggatgcggaccgcatcgtggtggcctacgagggc
gatgtgtacaaaaagcagggcggcgtacgcgcttacgacctgctcaagtaccacaagtcc
aaccagaactcctgctttggacagaagcccagctgccaccccggccagattgttaaaaaa
ggccagattctggctgacggccccggcattgacgatggcgaactggccctcggcaagaac
ctggtggtggccttcatgccctggtgcggctacaactatgaagactccatcctcatctct
gaacgtacggtgaaggaagacgtcttcacgtccatccacattgaggaattcgaggtggtg
gcccgcgataccaagctgggacccgaagaaatcacccgcgatattcccaacgtcagcgaa
gatatgctgcgtaacctggatgaaagcggcattatccgcatcggcgcggcagtcaagccc
gacgacatcctggtaggtaaaattacccccaagggcgaaacccagcttacccccgaagaa
aagctcctgagggccatcttcggcgaaaaggccagggatgtaaaaaacacgtccctcaag
gttcccccgggagtggaaggcaccattattgacgtcaaggtcttcaaccgccgttccggc
gaaaaggacgaccgcaccctggccattgaaggccacgacaccgcagtgctcgaccagaaa
gaagccgaccacatgcgcgcccttacggaccgtacccgcgccctgctgatcccgcacgtg
gtaggtaagcaggtggccgcatccctgcccggtaaaaagaagggtgaagtgctggtggaa
gccggcgcggccctgacggaagaaatgctggccagcctgccggtgaagaagctttccggc
ctcttcaagagcaaggaagtcaacgatgccgtggccgaaatcctcaagccctatgaccag
caggtcgactacctgcacgccatttacgattccaagcgcgaaaaggtcactgaaggcgat
gatctgccccccggcgtcatcaagatggtcaaggtgcatatcgccatcaagcgcaagctt
tctgtgggtgacaaaatggccggccgccacggcaacaagggtgttgtttcctgcattctg
ccggaagaagacatgcctttctttgccgacggccgccccgtggatatcgtgctcaacccc
ctgggcgtgccctcgcgtatgaacatcggccagatcatggaaacccacctcggctgggga
gccaaggaactgggccgtcagctggcggaacttctggattccggcgcggccatgcaggtg
ctgcgtgatgaagtgaagagcatcttcagctctgacgacatcaacgccctggtggacgag
atggatgatgaagagttcaaggcctctgtgagcaagctgcgcaacggcatcgtgaccaaa
acgcctgtttttgacggcgcgaccgaagaagaaatatggagctggatggaaagagccggc
cttgccaatgacggcaagacaactctttacgacgggcgcacgggcgaagccttcaaaaac
cgcgtgaccacgggtgtcatgtacatgctcaaactgcaccacctggtggacgaaaaaatc
cacgcccgctccacgggcccctactccctggtgacgcagcagcccctgggcggcaaggcc
cagttcggcggccagcgcctgggtgaaatggaagtgtgggcgcttgaagcttacggcgcc
gcctacctgctgcaggagttcctcacggtcaagtccgacgacgtgaccgggcgcgtgaaa
atgtatgaaaaaatagtcaagggtgacaacttccttgaagccggtctgcccgaatccttc
aacgttctggtcaaggagctcatgagccttgggcttaacgtgaccctgcaccaggaagaa
ggtaagaaaaagcccaagcgtacgggctatatgagagaacgcgaggacgaggcttaa
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