Desulfoluna limicola: DSLASN_40970
Help
Entry
DSLASN_40970 CDS
T07859
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dek
Desulfoluna limicola
Pathway
dek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSLASN_40970 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dek03021
]
DSLASN_40970 (rpoB)
03400 DNA repair and recombination proteins [BR:
dek03400
]
DSLASN_40970 (rpoB)
Enzymes [BR:
dek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSLASN_40970 (rpoB)
Transcription machinery [BR:
dek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSLASN_40970 (rpoB)
DNA repair and recombination proteins [BR:
dek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSLASN_40970 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_C31
Motif
Other DBs
NCBI-ProteinID:
BCS98465
UniProt:
A0ABN6FCM1
LinkDB
All DBs
Position
5189529..5193629
Genome browser
AA seq
1366 aa
AA seq
DB search
MTGSPLAKKRLRKNFGGKHKIAEIPDLIGMQRDSYNRFLQMDTPPEKRKDIGLQAVFKSV
YPIKDFTGSASLEYVSYSFGEIKHSMEECIQRGMTYEISLRIRVRLVVYDVDKEAGISNI
RDIKEQEIYFGTIPLMTKRGTFIINGTERVVVSQLHRSSGVFFDHDKGKTHSSGKIIYSA
RIIPVRGSWIDMEVDPKDIVNIRIDRRRKFPVTVLFKAFGYTNEDLLSYFYSKEKILLSK
GEFKRVFNEDFLKGQRASEDIVDADTGEVIVKQGRLFTKRAIKQLKTINIETLPISPDDI
AERGLATRLVDPVTGDVIAMAGDLVDEELIERITESNVTEFELLFQDAAYSSDAIRKTIV
ADKVTSKEAALVEIYRRLRPGNPATPEVAQEFIDHLFFKEAYYDLSGVGRLKMNHRLGLN
TDINIKTLRREDILLTAKTLVQLRDTQGVVDDIDHLGNRRVRAVGELLENQYRIGLVRME
RAIKERMSMQEVDALMPHDLVNPKPVSAVVKEFFGTSQLSQFMDQTNPLSETTHKRRLSA
LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR
VVKDSHVTNEVRMLSAFEEKALPIAQANAPMDDDNNYVNALVTSRVEGEFEMVEREDIEL
MDISPNQLVSVSASLIPFLENDDANRALMGSNMMRQAVPLTQSRAPLVGTGVEGVVARDS
GVAIVAEADAIVVEVDSERIVLQHEVEMDKPGFNPVTIYNLSKFIRSNQNTCFNHRPIVV
NGQKVKKGEVLADGPSTEKGELALGQNVTVAFMPWGGYNFEDSILVSEAIVRDGVYTSIH
IEEFEVVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRLGAEVNPGDILVGKITPKGE
TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVIGTVVDAKVFSRRGVDKDDRTRHIEDDE
IARFERDRNDKIDVIEKTAREMIEALVVGKSCPTPLRKAKKVVISADTVITKEMIDEISL
SQLEGIILDDDTVTERVNEILDRKNEETEKVKKTFEDQVVRYEKGDDLPPGVIKMIKVYV
AMKRMLSVGDKMAGRHGNKGVVSRVLPQEDLPYFEDGTMVDMILNPLGVPSRMNVGQILE
IHLGRAAKGLGNQIADLIDEKKADALRTKLKRIFTGEADHAMVDSLEGDDIYTFGENYRR
GVHMATPVFDGAEESDIKQYLTEAEYKTSGQAQLFDGRTGEPFDGEVTVGTMYMLKLHHL
VDDKLHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGASHALQEFITVKSDDM
AGRTRMYEKIVKGQAVLEPGMPESFRVLTKELQSLGLDVTLMEGTN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgactggaagccccttggcgaaaaagcgattaaggaagaatttcggagggaagcacaaa
atcgctgagattcctgatcttatcggtatgcagcgagattcttacaaccgttttctgcag
atggacaccccacctgagaagaggaaggatatcggcctgcaggcagtcttcaagtccgtt
taccccatcaaggactttacaggcagcgcttcccttgaatatgtgtcgtattccttcggt
gaaataaagcactccatggaggagtgtattcagcgtggaatgacgtatgaaatctcttta
cgaattcgcgttcgccttgtcgtttacgatgtcgataaggaagcgggtatctccaatatt
cgagacatcaaagagcaagagatctatttcgggaccattcccctgatgaccaagcgggga
acctttatcatcaacggcaccgagcgtgtcgtggtgagtcagctgcaccgatcctccggt
gtcttctttgatcacgataaaggcaagacccactccagcggcaagatcatttattctgca
cggatcatccccgtgcgtggttcctggatcgacatggaagtcgaccccaaggatatcgtt
aacattcgtatcgatcgccgcaggaagttcccggttaccgtacttttcaaggcctttggg
tacaccaacgaagaccttctcagttatttctacagcaaggagaagattctccttagcaag
ggcgagttcaagcgcgtcttcaacgaggattttctcaaaggccagcgcgccagcgaggat
atcgtggatgccgacaccggtgaggtcattgtcaagcagggccgcttgttcaccaagcgc
gccatcaagcagctgaagaccatcaacatcgaaactctgcccatcagccctgatgacatt
gccgaacgtggtctggcgacccgcctggtggaccctgtcacaggggatgtcattgccatg
gccggcgatttggtggatgaggagctcatcgagcgcatcaccgaatccaacgtgaccgaa
tttgagctgctctttcaggacgcggcttactcctcggatgccattcggaagaccatcgtg
gcagacaaggtgacctcgaaagaagccgccctggtcgagatctaccgccgcctgcgtccc
ggcaaccccgcgacccccgaggtcgcccaggagttcatcgatcacctcttctttaaagaa
gcgtactacgatctttcgggcgttggccgcctcaagatgaaccaccgtcttgggctcaac
accgatatcaatatcaagaccctgcgccgtgaggacattctcctcaccgccaagacactg
gttcagctccgcgatacccaaggggtcgtggacgatatcgaccacctcggcaaccggcga
gtccgtgctgtgggtgagctccttgagaaccagtaccgcatcgggctggtgcgcatggag
cgcgccatcaaagagcgcatgagcatgcaggaagtggatgcgctgatgccccacgacctc
gtgaaccccaagcccgtgtcggctgtggtcaaggagttcttcggcaccagccagctctcc
cagttcatggatcagaccaaccccttgtccgagaccacccacaagcgtcgtctttcggcc
ctggggcccggcggtctgacccgtgagcgtgcaggcttcgaggttcgtgacgtgcacccg
tcccactacggacgaatctgtcccattgagacccctgaaggccccaacatcggcctgatt
gtctccttgtgtacctacgcgcgggtcaacgacttcgggtttatcgaaaccccctaccgc
gtggtcaaggactcccatgtcaccaatgaggtgcgcatgctcagtgcctttgaagagaag
gccctgcccattgcacaggccaacgcacccatggatgacgacaacaactacgtcaatgcg
ttggtgacctcccgtgtggagggggaatttgagatggttgagcgcgaggatatcgagctc
atggacatctcacccaaccagctggtgagcgtttccgcatccttgattccgttccttgaa
aacgacgacgccaaccgagccctcatggggtcaaacatgatgcgtcaggccgtgcctctg
acccagagtcgggcacccctggtgggaaccggcgtggagggcgtggttgcgcgcgactcg
ggcgttgccattgtggctgaagccgacgccattgtggttgaggtggactccgagcgcatt
gttcttcagcacgaggtggagatggacaagcccgggttcaaccccgtgaccatctacaac
ctctccaagtttatacgctccaaccagaacacctgcttcaaccaccgacccatcgtggtc
aacggtcagaaggttaaaaaaggcgaagttcttgccgacggcccctccacagagaagggc
gagctggccctgggccagaacgtgaccgtggcattcatgccctggggcggctacaacttt
gaggactccatccttgtttccgaggccattgtccgggacggcgtgtacaccagtatccat
atcgaagaattcgaggtggttgcccgtgacaccaagctcggcaaagaagagatcacccgg
gacattcccaacgtcggtgaagaggccctgaaggacctcgatgaaagcggcatcatccgc
ctcggtgcggaggtgaatcccggtgacattcttgtgggcaagatcacccccaagggcgaa
acccagctctcccccgaggagaaactccttcgcgccattttcggtgagaaagccggcgat
gtgaaggacacctccctgagggttcccccgggtgtgatcggcaccgtggtcgacgcgaag
gtgttttcccgtcgtggtgtggataaggacgatcgtacccgccacatcgaagacgacgag
attgcccgtttcgaacgagatcgaaacgacaagatcgatgtgatcgaaaagacggcccgc
gaaatgatcgaggccctggtggtgggcaagagctgccccacccccttgaggaaagcgaaa
aaagtcgtcatctctgcagacaccgtcatcaccaaagagatgatcgacgagatctccctc
tcccagctggaagggattatcctcgacgacgacaccgtcaccgagcgtgtcaacgagatc
ctcgatcgcaagaacgaggagaccgagaaggtcaaaaagacctttgaggaccaggtggtg
cgttacgagaagggcgatgacctgcctccgggcgtcatcaaaatgatcaaagtctatgtg
gccatgaagcgcatgctctccgtgggcgacaagatggcgggtcgacacggaaacaagggt
gttgtctcccgtgtccttccccaggaggacctgccctactttgaagacggcaccatggtg
gacatgattctgaaccccctgggcgttccttcgcgaatgaacgtcgggcagattctcgaa
atccatctgggccgtgccgccaaggggctcggcaatcagatcgccgatttgatcgacgag
aagaaggccgatgcacttcggaccaagctcaagcgaatcttcaccggagaggccgaccat
gcgatggtcgacagccttgaaggggatgatatctatacctttggagaaaactatcgtcgc
ggggtccatatggctacccccgtctttgacggtgccgaagagagcgacatcaagcaatac
ctcaccgaggccgagtacaaaacctccggccaggctcagctgttcgacggtcgcaccggc
gaaccctttgacggcgaggtgacggtcggtaccatgtatatgctcaaactccaccacctg
gtggatgacaagctccacgcccgatccatcggtccctactcccttgtgacccagcagccc
ctgggtggcaaggcacagttcggtggccagcgtctcggggagatggaggtctgggccatg
gaagcgtatggtgcgtcccatgcacttcaggaattcatcacggtcaagtcggacgacatg
gccggtcgtacccgaatgtacgagaagatcgtcaagggacaggctgttcttgagccggga
atgcccgaatccttccgcgttctcaccaaggaactacagagtctcggactggacgtaacc
ttaatggaaggcacaaactaa
DBGET
integrated database retrieval system
