Demequina sp. TMPB413: LGT36_000195
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Entry
LGT36_000195 CDS
T08088
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dem
Demequina sp. TMPB413
Pathway
dem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LGT36_000195 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dem03021
]
LGT36_000195 (rpoB)
03400 DNA repair and recombination proteins [BR:
dem03400
]
LGT36_000195 (rpoB)
Enzymes [BR:
dem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LGT36_000195 (rpoB)
Transcription machinery [BR:
dem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LGT36_000195 (rpoB)
DNA repair and recombination proteins [BR:
dem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LGT36_000195 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
CDC48_N
mTERF
Motif
Other DBs
NCBI-ProteinID:
UPU88383
LinkDB
All DBs
Position
48087..51560
Genome browser
AA seq
1157 aa
AA seq
DB search
MAASRTDSAFANQTASRRVSFAQVSEPVEVPNLIGLQTESFDWLLGNKAWQTRIEAARKA
GRNDVPEVAGLQEIFEEISPIEDFGQTMSLSFSDPYFEEPRHTPEECKEKDFTYAAQLFV
TAEFMNNTTGEIKSQTVFMGDFPLMSPRGTFIINGTERVVVSQLVRSPGVYFESTADKTS
DKDIYTAKMIPSRGAWLEFEIDKRDAVGVRVDRKRKQSVTLFLKALGLSDEDIAKEFADY
PSVLETLEKDTVHSQDEALVDLYRKLRPGEPPTVEAGQNLLDNFYFNPKRYDLAKVGRFK
LNKKLGVDKPLGDSVLGVDDIVATVKYIAAAHAGHTTLKGANGEVIVETDDIDHFGNRRI
RAVGELIQNQIRTGLSRMERVVRERMTTQDVEAITPQTLINTRPVVAAIREFFGTSQLSQ
FMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIG
SLASFGRINPLGFVETPYRKVVKGKITDQVDYLTADDEDRYVIAQANAQVDDNRGFLEER
VLVRAKGGEVDFVAPEAVDYIDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQAVPL
VRSEAPLVGTGMERRAAVDAGDVVVATKAGVVTEVSSDLVTVANDDGTTGSYRIAKFQRS
NQGTSYNQRVIVDEGDRVETGAVIADGPATDNGDLALGKNVLVAFMCWEGHNFEDAIILS
QRLVQDDTLSSIHIEEHEVDARDTKLGPEEITRDIPNASEEVLADLDERGIVRIGAEVRA
GDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEQGTVIGVRVFTEEDG
DDLPAGVNQLVRVYIAQRRKIQEGDKLAGRHGNKGVISTILPQEDMPFLEDGTPVDVILN
PLGVPGRMNVGQVLETHLGWVAHEGWDASGVKEDWVKAVPEGSIKAEPGTPVATPVFDGI
SEQTITGLRTVTTPNRDGDRLLDNTGKARLYDGRSGEPFPEPISVGYKYILKLHHLVDDK
IHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDIIGRV
KVYEAIVKGQNIPEPGLPESFRVLMKEMQSLCLNVEVLNAEGQLVEMRESEDDAYQAAES
LGISLSSRPDASSVDEI
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcaccgattccgctttcgccaaccaaaccgcttcacgccgcgtttca
ttcgctcaggtctctgagccagttgaggtccctaacctcatcgggctgcagaccgagtcg
tttgactggctgctgggcaacaaggcttggcaaacccgtattgaagccgcacggaaggca
ggtcgcaatgacgtgcctgaggttgcgggacttcaggagatcttcgaagagatctccccg
atcgaggacttcgggcagaccatgtccctgtccttctcggacccctacttcgaggaaccc
cgccacactcctgaggagtgcaaggagaaggacttcacgtatgcagcccagctgttcgtg
acggcggagttcatgaacaacaccacgggtgagatcaagtctcagaccgtcttcatgggc
gacttcccgctcatgagcccgcgcggcacgttcatcatcaacggcaccgagcgcgttgtc
gtttctcagttggtgcgctcgccaggcgtgtacttcgagtcgacggcagacaagacgtcc
gacaaggacatctacaccgcgaagatgatcccctcgcgcggcgcctggctcgagtttgag
atcgacaagcgcgacgccgtcggcgtccgcgtcgaccgcaagcgcaagcagtcagtcacc
ctgttcctcaaggccctcggcctgtcggatgaagacatcgccaaggagttcgccgactac
ccgtcagtgctcgagaccctcgagaaggacaccgtccactcgcaggacgaggcgctcgtc
gacctctaccgcaagctccgtccgggcgagccgcccacggtcgaggccggtcagaacctg
ctcgacaacttctacttcaaccccaagcgctacgacctcgccaaggttggccgcttcaag
ctgaacaagaagttgggcgtcgacaagcctctcggcgactcggtgctcggtgtcgacgac
atcgttgcgaccgtcaagtacatcgcggccgctcacgctggccacacgacgctcaagggc
gccaacggcgaggtcatcgtcgagaccgatgacatcgaccactttggcaaccgtcgcatc
cgcgccgtcggcgaactgatccagaaccagatccgcacgggcctgtcccgcatggagcgc
gtggtgcgcgagcgcatgacgactcaggacgtcgaggccatcacgccgcagaccctgatc
aacacgcgtcccgtcgtcgccgccatccgcgagttcttcggaacctcgcagctgtcgcag
ttcatggaccagaacaacccgctcgcgggactgacccacaagcgtcgtctgtcggcactt
ggccctggtggtctctcccgtgaccgcgcaggcatggaagtgcgtgacgttcacccgtcg
cactacggccgcatgtgccccatcgagacccctgaaggcccgaacatcggcctgatcggc
tctctcgcgtccttcggtcgtatcaacccgctcggctttgtcgagacgccgtaccgtaag
gtcgtcaagggcaagatcaccgaccaggtcgactacctcacggccgacgacgaggaccgc
tacgtcatcgcccaggccaacgcgcaggtggacgacaaccgcggcttcctcgaggagcgc
gtgctcgtgcgcgccaagggtggagaggtcgacttcgtcgcccccgaagccgttgactac
atcgacgtgtcgcctcgccagatggtgtccgtcgctactgcgctcatcccgttcctcgag
cacgacgacgccaaccgcgccctcatgggtgcgaacatgcagcgtcaggctgtgccgctc
gtccgctctgaggcgccgctcgtcggtaccggtatggagcgccgcgcggcggtcgacgcc
ggtgacgtggtcgttgccaccaaggcaggcgtcgtcaccgaggtctcttccgacctggtg
accgtcgccaacgacgacggcacgacgggttcctatcggatcgcgaagttccagcgctcc
aaccagggcaccagctacaaccagcgcgtgatcgtcgacgagggagaccgcgtcgagact
ggcgcagtcatcgccgacggtcctgccacggacaacggcgacctcgccttgggcaagaac
gtcctcgtggcgttcatgtgctgggaaggtcacaacttcgaggacgcgatcatcttgtcg
cagcgcctcgttcaggatgacaccttgtcctcgattcacatcgaggagcacgaggtcgac
gcccgcgacaccaagttgggccctgaagagatcacgcgcgacatcccgaacgcttcagag
gaggtccttgctgacctcgacgagcgcggcatcgtccgtatcggtgccgaggtacgtgcc
ggtgacatcctcgtcggcaaggtcacgccaaagggcgagaccgagctgaccccagaggag
cgcctgctgcgcgccatcttcggtgagaaggctcgtgaggtgcgcgacacgtcgctcaag
gttcctcacggcgagcagggcaccgtcatcggcgtccgcgtcttcacggaagaggacggc
gacgaccttcccgctggtgtgaaccagttggtgcgcgtctacatcgctcagcgccgcaag
atccaggaaggcgacaagctcgctggccgccacggcaacaagggcgtcatctcgacgatc
ctgccgcaggaggacatgccgttccttgaggacggcacgccagtggacgtcatcctgaac
ccgcttggtgttcccggccgcatgaacgtcggccaggttctcgagacccaccttgggtgg
gttgctcacgagggctgggacgcctccggcgtcaaggaggactgggtcaaggctgttcct
gaaggttccatcaaggccgagccaggcacgccagtggcgacgccggtgttcgacggcatc
tcggagcagaccatcaccggcctgcgcaccgtgacgaccccgaaccgcgatggcgaccgc
ttgctggacaacaccggcaaggcgcgactgtacgacggtcgctctggtgagccgttccct
gagccgatctcggtgggctacaagtacatcctgaagctccaccacttggtggacgacaag
attcacgcccgctccaccggcccgtactcgatgatcacccagcagccgctcggcggtaag
gcgcagttcggtggccagcgcttcggtgagatggaagtgtgggccctcgaggcgtatggc
gctgcctacgccctgcaggagctcctgaccatcaagtccgacgacatcatcggtcgtgtg
aaggtctacgaggccatcgtcaagggccagaacattccggagccaggtctcccggagtcg
ttcagggtgctcatgaaggagatgcagtcgctgtgcctgaacgtcgaggtactcaacgca
gaaggccagctggtcgagatgcgtgagtcggaagacgacgcttaccaggctgccgagtcg
ctcggcatctctctgtccagccgtcccgacgcttccagcgtcgacgagatttaa
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