Denitratisoma sp. DHT3: B9N43_15810
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Entry
B9N43_15810 CDS
T10559
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
deni Denitratisoma sp. DHT3
Pathway
deni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B9N43_15810 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deni03021
]
B9N43_15810 (rpoB)
03400 DNA repair and recombination proteins [BR:
deni03400
]
B9N43_15810 (rpoB)
Enzymes [BR:
deni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B9N43_15810 (rpoB)
Transcription machinery [BR:
deni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B9N43_15810 (rpoB)
DNA repair and recombination proteins [BR:
deni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B9N43_15810 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QDX82568
LinkDB
All DBs
Position
3425463..3429566
Genome browser
AA seq
1367 aa
AA seq
DB search
MTYSYTEKKRIRKSFAKRAGVLDVPFLLGTQLESYTQFLQVDVPISQRRSQGLQAAFNSI
FPIVAHSGVARLEFVEYRLGEPAFDVKECQQRGLTFASPLRAKVRLVILDRESNNEKIKE
VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILAEFFEFDTFLLGKKG
IQFELVPERLRGEVARFDIMDKAGKVIVPRDKRITAKHIRELGEAGIKKLAVPDDYVLGR
IVATNVVDGETGEILAQANEEITESLLAKLQEAGVTELKTLYVNDLDRGAYISTTLRTDE
TVDQWAARVAIYRMMRPGEPPTEEAVETLFYGLFYSEDRYDLSTVGRMKFNRRVGRQELE
GAGTLSNQDIVDVIRILVELRNGRGEVDDIDHLGNRRVRSVGELAENQFRTGLVRVERAV
KERLNQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARVNPFGFIETPYRKAE
DGRVADEIEYLSAIEEGKYIIAQANAQLDKNGRLNDELVSCRSKGEFELKEPADVQYMDV
APGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGTA
VQALRGGLVDYVDANRIVVRVNDAETVAGEVGVDIYNLTKYTRSNQNTNINQRPVVKVGD
IIAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRFTSIHIEE
LTVVARDTKLGPEEITRDIATLGEAQLSRLDDSGIVYIGAEVETGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMNGTVIDVQVFTREGIERDKRAQSIIDDMLKG
YKQDLADQMRIVERDTFARIERLLVNKVASKGPKKLTKGTKITQAYLETLEHYHWFDISL
ADEEAQQQLENLRDSLEQTRRDFDVAFDAKKKKLTQGDELPPGVQKMVKVYLAVKRRLQP
GDKMAGRHGNKGVVSKIVPIEDMPHMADGTPVDIVLNPLGVPSRMNIGQILETHLGWAAK
GLGNRIDEMLRAEANTAEVRKYLNKVYNSAGHGADLDGLGEDEILELAGNLRGGVPFATP
VFDGAKEDEIRAMLSLAYPAEVAKRIGLTDSKTQTTLYDGRTGEAFERPVTVGYMHVLKL
HHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKS
DDVNGRTKVYESIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLERY
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgacgtactcgtataccgagaaaaaacgtattcgtaaaagctttgccaagcgcgctggc
gtgcttgacgtgcctttcctgctgggaactcagcttgagtcctatacccagttcctccag
gtggatgtgcccatctcgcagcggcgcagccagggcttgcaggccgctttcaattcgatc
ttcccgatcgtcgcccattccggcgtggcgcgtctggagttcgtcgagtatcgcctgggt
gagccggccttcgacgtcaaggaatgccagcagcgcggcctgaccttcgcttcgccgttg
cgcgccaaggtgcgcctggtgatcctggaccgcgagagcaacaacgagaagatcaaggaa
gtcaaggagcaggaggtctacatgggcgagatcccgctcatgaccaccaccggttccttc
gtgatcaacggtaccgagcgcgtcatcgtttcgcagctgcatcgctctcccggcgtgttc
ttcgagcacgacaagggcaagacccacagttccggcaagctgctgttctcggcgcgcatc
attccctaccgcggctcctggctggatttcgaattcgacccgaaggacatcctgttcttc
cgtgtggaccgtcgccgcaagatgccggtcaccatcctgctcaaggccatcgggatgacg
tcggaacagatcctggcggaattcttcgagttcgacaccttcctcctcggcaagaagggc
atccagttcgaactggtgcccgagcggctgcggggcgaggtggcgcgcttcgacatcatg
gacaaggccggcaaggtcatcgtcccccgcgacaagcggatcaccgcgaagcatatccgt
gaactgggcgaggccggcatcaagaagctggcggtgcccgacgactacgttctgggccgc
atcgtcgccaccaacgtggtggatggcgagaccggcgagatcctggcccaggccaacgag
gagatcaccgagagcctgctggccaagctgcaggaggccggcgtcaccgagctgaagacg
ctgtacgtcaatgatctggaccgtggcgcgtacatttccaccaccctgcgcaccgacgag
acggtggaccaatgggcggcccgcgtcgccatctaccgcatgatgcgccccggtgagccg
cccactgaagaggcggtggagaccctgttctacggcctgttctactccgaggatcgctac
gatctgtccaccgtcgggcgcatgaaattcaatcggcgcgtcggacgtcaggaattggaa
ggtgccggcaccctgtccaaccaagacatcgtcgatgtcatccgtatcctggtggaactg
cgcaatggtcgcggcgaagtcgatgatatcgaccacctgggcaaccgccgggtgcgttcc
gtcggcgaactggccgagaaccagttccgtaccggcctggtccgcgtcgagcgggcggtc
aaggagcgtctgaaccaggccgagagcgacaacctgatgccgcacgacctgatcaacgcc
aagcccatttcggcggcgatcaaggaattcttcggctccagccagctttcccagttcatg
gaccagaccaatccgctgtccgagatcacccacaagcgtcgggtgtccgcactgggcccg
ggcggcctgacgcgggaacgggccggcttcgaggtgcgcgacgtgcacccaacccattac
ggccgcgtctgtccgatcgaaacgccggaaggcccgaacatcggcctgatcaattccctg
gcgctctacgcgcgggtcaatcctttcggtttcatcgagacgccttatcgcaaagccgag
gacgggcgcgtcgcggacgagatcgagtatctgtccgcgatcgaggagggcaagtacatc
atcgcgcaggcgaacgcccagctcgacaagaatggccgtctgaacgacgagttggtgtcc
tgccgttccaagggcgagttcgagctgaaggaaccggcggacgtgcagtacatggacgtg
gcgccggggcagatcgtctccgtggcggcttcgctgattccgttcctcgagcatgacgat
gcgaaccgtgccttgatgggcgccaacatgcaacgccaagccgtgccctgtctgcgtccg
gaaaaggccctggtcggtaccggcatcgagcgcaccgtggcggttgactccggcaccgcg
gtgcaggccctgcgcggcggtctggtggattacgtcgatgccaaccgcatcgtggtgcgg
gtcaatgatgcggaaacggtcgccggcgaagtcggcgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacaccaacatcaaccagcgtcccgtggtcaaggtgggtgac
atcatcgccaagggcgacgtggtggccgacggcgcctccaccgacctgggcgaactggcc
ctgggccagaacatgctggtggcgttcatgccctggaacggctacaacttcgaggactcg
atcctgatctcggagcgcgtcgtggccgatgaccggttcacgtcgatccatatcgaggaa
ttgaccgtcgtcgcccgcgataccaagctgggacccgaggaaatcactcgcgacatcgcg
accctgggtgaggcgcaactctcccgcctggatgattccggcattgtctacatcggcgct
gaagtcgaaaccggcgacgtcctggtcggcaaggtgacgccgaagggtgagacgcaactg
acgccggaggagaagctcctgcgcgccatcttcggcgaaaaggcgtccgacgtgaaggac
acttccctgcgggtgccctccggcatgaatggcaccgtgatcgacgtccaggtgttcacg
cgcgaaggcatcgagcgcgacaagcgcgcccagtccatcatcgacgacatgctcaagggc
tacaagcaggatctggccgaccagatgcgcattgtcgagcgcgataccttcgcccggatc
gagcggctgttggtcaacaaggtggccagcaagggaccgaagaaactgaccaagggcacc
aagatcacccaagcgtacctggagaccctcgagcattaccactggttcgacatcagcttg
gccgacgaggaggcccagcagcagctggaaaacctgcgcgacagtctggaacagacgcgg
cgcgacttcgatgtcgccttcgatgcgaagaagaagaagctgacccagggggatgaactg
ccccccggcgtgcagaaaatggtcaaggtctatctggcggtcaagcgccgtctgcagccc
ggcgacaagatggccggtcgtcacggcaacaagggcgtggtgtccaagatcgtgccgatc
gaagacatgccgcacatggcggacgggaccccggtggatatcgtgttgaacccgctgggt
gtgccgtcgcggatgaacatcggccagattctggaaacccatctgggctgggccgcgaag
ggccttggtaatcggatcgatgaaatgctgcgggccgaagccaatacagccgaagtgcgc
aaatacctgaacaaggtctataacagcgccggacacggcgccgacctcgacgggttgggc
gaggatgagatcctggagctggccggcaatttgcggggcggcgtgccgttcgccacgccg
gtgttcgatggcgccaaggaagacgagatccgcgcgatgctgagcctggcttacccggcc
gaggtggccaaacggatcggcctgacggacagcaaaacccaaacgaccctctacgatggg
cgtacgggtgaagcgttcgagcgtccggtgacggtcggctacatgcacgtgctcaagctg
caccacctggtcgacgacaagatgcacgctcgctccactggcccctacagtctggtgact
cagcagccgctgggcggcaaggcccagttcggcggtcagcgcttcggggaaatggaagtc
tgggcgctggaagcgtatggcgcgtcctacaccctgcaggaaatgctcaccgtcaagtcc
gacgacgtcaatggccgtaccaaggtgtacgagagcatcgtcaagggtgagcacaagatc
gatgccggcatgccggagtccttcaacgttctggtgaaggaaatccgctctcttgccatc
gacatcgatttggaacgttattga
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integrated database retrieval system
