Denitratisoma sp. DHT3: B9N43_15815
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Entry
B9N43_15815 CDS
T10559
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
deni Denitratisoma sp. DHT3
Pathway
deni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B9N43_15815 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deni03021
]
B9N43_15815 (rpoC)
03400 DNA repair and recombination proteins [BR:
deni03400
]
B9N43_15815 (rpoC)
Enzymes [BR:
deni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B9N43_15815 (rpoC)
Transcription machinery [BR:
deni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B9N43_15815 (rpoC)
DNA repair and recombination proteins [BR:
deni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B9N43_15815 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QDX82569
LinkDB
All DBs
Position
3429598..3433797
Genome browser
AA seq
1399 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRAQLLTEDDYLAKVEEYGDDFTAVM
GAEGIRELLRTIDIGHEIERLRQELETTGSEAKIKKLAKRLKVLEAFQQSGIKPEWMVLE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFERLEKMGIASTIKAAKKEVEAETGIVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGAPIIVPSQDVVLGLYYATREHAAARGTGMYFTDVAEVLRGVESR
QVDLHARISVRIKEYDRDGDGWKEKVTRYSTTAGRAILSEILPKGLPFKVIDKALKKKEI
SKLIDESFRRCGLKDTVVFADQLMQSGFRLATRGGISIAVDDMLVPNQKHAIIDQAEGEV
KEIERQYTSGLVTVGERYNKVVDIWGRAGDQVAKAMMDQLSHQEVTNHEGKAVKQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEVPITTNFREGLNVQQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTELDCGTQNGFALRALVEGGEVIEPLRERILG
RVVASDVINPDTQDVVFEAGTLLDEDAVDLIESLGIDEVRVRTALTCETRYGLCAKCYGR
DLGRGYLVNEGEAVGVVAAQSIGEPGTQLTMRTFHVGGAASRAAAQSQVEAKSAGTANLS
ATMRYVTNPKGEKVVIARSGEVVIADDNGRERERHKVPYGATLLIEDGQQIKAGAQLANW
DPHTRPIVTEYAGTVKFEHVEEGATVAKQIDEVTGLSTLVVIESKGRGKSSAKGLRPQVK
LLDEHGEEIKIHGTDHVVTITFQVGSIITVKDGQPVSVGEILARIPQESAKTRDITGGLP
RVAELFEARSPKDAGVLAEVTGTVSFGKDTKGKQRLVITEPDGTAHEYLISKDKHVMAHD
GQVVNKGEVIVDGSADPHDILRLKGVEELARYIIDEVQDVYRLQGVKINDKHIEVIVRQM
LRRVVVTDRGDSKFIREEQVERSLLLDENDKLLSEGKRPADYQHQLLGITKASLSTDSFL
SAASFQETTRVLTEAAIMGKRDELRGLKENIIVGRLIPAGTGHAYHQTRRKQSDGLDAAE
GVFDLPPAEESSTEGTQAA
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctattcaagcaagtcacgcaggaagaggaattcgacgcgatc
accatcggtctggcctcgcctgacaagatccgttcctggtcctatggcgaggtcaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgcgacggtctgttctgcgccaag
atcttcggcccggtgaaggactacgaatgtctgtgcggcaagtacaagcgtctcaagcat
cgtggcgtgatctgcgaaaagtgcggcgtcgaagtgacccaggccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagcccggtcgctcatatctggttcctcaagtccctg
cccagccgtctcggcatggtgctggacatgacgttgcgcgacatcgagcgggtgttgtat
ttcgaagccttcgtcgtcgtcgagcccggtatgacgccgttgaaccgcgcgcaactgctg
accgaagacgattatctggccaaggtcgaggagtacggcgacgacttcaccgcggtgatg
ggcgccgagggcatccgggaactgctgcgcaccatcgacatcggccacgagatcgagcgc
ctgcgccaggaactggaaacgaccggttccgaggccaagatcaagaagctcgccaagcgc
ctcaaggtgttggaggccttccagcaatccggcatcaagcccgagtggatggtgctggaa
gtgctgccggtgctgcctcccgacctgcgtcccctggtgcccctggatggcggccgtttc
gccacttcggacctgaacgacctgtaccgccgggtgatcaaccgcaacaatcgcctgaag
cgcctgctggagctgaaggcgccggacatcatcgtccgcaacgagaagcggatgctgcag
gagtcggtggactccctgcttgacaacggtcgccgcggcaaggccatgaccggcgccaac
aagcgtccgctgaagtccctggccgacatgatcaagggcaagtccggccgcttccggcag
aacctgctgggcaagcgggtggactattccggccgttccgtgatcgtggtggggccccag
ctcaagctgcaccagtgcggtctgcccaagaagatggcgctggaactgttcaaacccttc
atcttcgagcgtctcgagaagatgggcatcgccagtaccatcaaggcggccaagaaggaa
gtcgaggccgagaccggtatcgtctgggatattctggaagaagtgattcgcgagcatccg
gtgctgctgaaccgcgcgccgacgctgcaccggcttggcatccaggctttcgagccgacc
ctgatcgaaggcaaggccatccagctccatcccctggtatgtaccgccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtccctggaagcccagatggaagcc
cgcactctgatgctggcctccaacaacgtactgtctcctgccaacggcgctcccatcatc
gttccgtcccaggacgtggtgctggggctgtactacgcgacccgtgaacacgccgccgct
cgtggcaccgggatgtatttcaccgacgtcgccgaggtgctgcgcggcgtggagtcgcgc
caggtggacctccacgcccggatctcggtgcgcatcaaggagtacgaccgtgatggtgac
ggctggaaggaaaaagtcacccgctactcgaccacggcgggccgcgccatcctgtccgaa
attctccccaaggggctgccgttcaaggtcatcgacaaggcgctgaagaagaaggaaatc
tccaagctgatcgacgagtccttccgccgctgcggcctcaaggacaccgtggtgttcgcc
gatcaactgatgcagtccggcttccgcctggccacccgcggcggcatctcgatcgccgtg
gacgacatgctggtgcccaaccagaaacacgcgatcatcgaccaggccgagggcgaggtt
aaggaaatcgagcgccaatacacctccggtctggtgaccgtgggcgagcgctacaacaag
gtggtggatatctggggccgtgccggcgaccaggtggcgaaggcgatgatggaccagctt
tcccatcaggaagtgaccaatcatgaagggaaggccgtcaagcaggagtccttcaactcc
atctacatgatggccgactccggcgcccgcggctccgccgcccagatccgccagctggcc
ggcatgcgcggcctgatggccaagcccgacggctccatcatcgaggtgcccatcacgacg
aacttccgcgagggcttgaacgttcagcagtacttcatctccacccacggtgcccgtaag
ggtttggccgacacggcgctgaagaccgccaactcgggctacctgacccgccgcctggtg
gatgtgacccaggacctggtggtcaccgaactggattgcggcacccaaaacggctttgcc
ctgcgcgcgctcgtggagggcggcgaggtgatcgagcccctgcgcgaacggattctgggg
cgggtggtcgccagcgacgtgatcaatcccgatacgcaggacgtggtcttcgaggcgggt
actttgctcgacgaggacgcggtcgacctgatcgagagcctggggatcgacgaagtgcgc
gtgcgcacggcgctgacctgcgagacccgctacggcctttgcgccaagtgttatggccgc
gacttgggtcgcggctatctggtgaacgagggtgaagcggtcggtgtcgttgccgcccaa
tccatcggtgaacccggcacccagttgacgatgcgtaccttccacgtcggtggtgctgct
tcccgggccgccgcgcagagtcaggtggaggccaagagcgccggtacggccaacctgtcc
gccaccatgcgctatgtcaccaacccgaagggcgagaaagtcgtgattgcccgttccggc
gaggtggtgatcgcggacgacaatggccgcgaacgcgagcgccacaaggtgccttacggc
gccaccttgttgatcgaggacggccagcagatcaaggccggcgcccagctggccaactgg
gacccccatacgcgcccgatcgtgaccgagtatgcgggtacggtgaagttcgagcatgtg
gaggaaggcgccaccgtcgccaagcagatcgacgaagtcaccggtctgtcgaccctggtg
gtgatcgagtccaagggacgcggcaagtcgtcggccaagggcttgcggccccaggtcaag
ctgctcgacgaacatggcgaggaaatcaagattcacggcaccgaccatgtggtgaccatc
accttccaggtcggctcgatcatcacggtgaaggatggacagccggtctccgtgggcgaa
attctggcccgcatcccccaggagtcggccaagacccgcgacattaccggcggtctgccc
cgcgttgcagagttgttcgaggctcgttcgcccaaggacgcaggcgtattggccgaggtg
accggtaccgtttccttcggcaaggacaccaagggcaagcagcgcctggtcatcacggaa
cccgatggcacggcgcatgagtacctgatctcgaaggacaagcacgtcatggcccacgac
ggccaggtcgtcaacaaaggcgaggtcatcgtcgacggttcggccgatcctcatgacatc
ctgcgtctgaagggcgtcgaagagctggcgcgctacatcatcgacgaagtgcaggacgtg
tatcgtctgcagggcgtgaagatcaacgacaagcatatcgaggtgatcgtccgccagatg
ctgcgccgcgtggtcgtcaccgatcgtggcgactccaagttcatccgcgaggagcaggtc
gagcgttcgctgctgctcgatgagaatgacaagctgctgagcgagggcaagcggccggcg
gactatcagcaccagctgctgggcattacgaaggcgtctttgtcgaccgattcgttcctg
tccgccgcctccttccaggagactacccgcgttctgaccgaggccgcgatcatggggaaa
cgcgacgaattgcggggcctcaaggaaaacatcatcgttggccgcctcattccggccggt
accggccatgcctaccatcagacccgacgcaaacagtccgacgggctggatgcagcggaa
ggggtgttcgacttgccgcccgcagaagaaagctcgacggagggtactcaagccgcttga
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