Desulfuromonas sp. DDH964: DBW_1110
Help
Entry
DBW_1110 CDS
T04368
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
deu
Desulfuromonas sp. DDH964
Pathway
deu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DBW_1110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deu03021
]
DBW_1110
03400 DNA repair and recombination proteins [BR:
deu03400
]
DBW_1110
Enzymes [BR:
deu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DBW_1110
Transcription machinery [BR:
deu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DBW_1110
DNA repair and recombination proteins [BR:
deu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DBW_1110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AMV71484
LinkDB
All DBs
Position
1207700..1211809
Genome browser
AA seq
1369 aa
AA seq
DB search
MAYSIANNQLLRKHFAQIKRIIDIPNLIDIQKNSYKRFLQAELPPSARQNIGLEAVFRSV
FPIRDFSETCSLEYVSYSLGIPKYDVDECHQRGMTFAAPVKVRVRLVSWDVDKDSGVQSI
RDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKILYSA
RVIPYRGSWLDFDFDHKDLLYVRIDRRRKLPATVLLKALGYSTEELLNYYYDIDTLLIDS
NGYQKKVNLDLLPGQRAAFDVVAADGEVIVKANRKFTKAAIRKLAEKGIETIQILEEDVL
GKIASTDIVDTATGEVVVECNEELTAGKIEELRSRGISELKVLFIDHLYVGPYLRDTLLL
DKVGTPDDAMIEIYRRLRPGDPPTLKSARALFDSLFFNAERYDLSAVGRLKLNYKLGLET
PLEHTTLTKEDILEVVRYLIDLRNGKGAIDDIDHLGNRRVRAVGELLENQYRVGLVRMER
AIKERMSLQEVDSLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRL
VKDGKVTTDIRYFSALEEEGHAIAQANAPLNEDSTFVNELVNARKNGEFMLMNREDIELM
DVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADAPLVGTGMERIVAHDSG
AAVVARHHGTVESVDAARIVVRIDEGEVDETGTGVDIYNLIKFIRSNQNTCLNQKPIVKV
GDKVKRGEIIADGPSTQWGELALGQNVLVAFMPWEGYNFEDSILISEKLVKEDRYTSIHI
EEFECVARDTKLGKEEITDDIPNLGEDALADLDESGIIRIGAEVQPGDILVGKITPKGET
QLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGVVIGARVFSRKGADKDSRTEMIEKAEI
DKLLKDQHDEIRIIRDSTKGKLKSLLVGQTAAVQVVNESGTVLVAKGKKLTEEALDQLPF
LAWREISLAKAEEIEEKVATVFLRLAEREDLIKGVFADKIEKLKRGDDLPPGVIKMVKVY
IAIKRKLSVGDKMAGRHGNKGVLSRILPEEDMPYMADGTPVEIVLNPLGVPSRMNVGQIL
ETHLGLAARGLGLQIQEVLDRDYSPAALKKKVKTIYGDKELAKFIDGLGDDEVLAMGRRL
AGGIPMASPVFEGVNEEQMKAEMTRAGVSSGGQMTLYNGKTGDPFKEQVTVGIMYMLKLH
HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAHALQEFLTVKSD
DVAGRTRIYEAIVKGKHTLEAGLPESFNVLIKELQSLCLDVELLEEEEE
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcgatcgcgaataaccagcttctgaggaaacacttcgcgcagatcaagcgg
atcatcgatatccccaatctgatcgatatccagaagaattcctacaagcgtttcctccag
gcggagcttcctccttcggcgcggcagaatatcggcctcgaggcagtcttccgctccgtc
tttccgatccgcgacttcagcgaaacctgttccctcgagtatgtctcctactccctggga
attcccaaatatgacgtcgacgagtgccaccagcgcggcatgaccttcgccgccccggtc
aaggtccgggtgcgcctcgtctcctgggatgtcgacaaggattccggcgtgcagtcgatc
cgcgacatcaaggaacaggaggtctatttcggcgagattccgctcatgaccgaaaacggg
accttcatcatcaacgggactgaaagggtcatcgtcagccagttgcaccgctcccccggg
gtctttttcgaccacgacaagggaaaaacccacagcagcggcaagatcctttattccgcc
cgggtcattccctaccgcggctcttggctcgacttcgactttgatcataaagacctcctc
tacgtgcgcatcgaccgccgccgcaagctgccggcgacggtgctgctcaaggccctcggc
tattcgaccgaggagctgctcaactactactacgacatcgataccctgctgatcgacagc
aacggataccagaaaaaggtcaacctcgacctcctcccgggacagcgcgccgccttcgac
gtggtggcagccgacggcgaggtgatcgtcaaggcgaaccgcaagtttaccaaggcggcg
atccgcaagctggccgaaaaggggattgagacgatccagatccttgaggaggatgtcctc
ggcaagatcgcctccaccgacatcgtcgacaccgccaccggcgaggttgtcgtcgaatgc
aacgaggaactgaccgccggcaagatcgaagagttgcgcagccgcggtatcagcgagctc
aaggtcctcttcatcgaccacctctatgtcggcccctatctgcgcgacaccctgctcctc
gacaaggtcgggaccccggacgacgcgatgatcgagatttatcggcggctgcgccccggt
gatccgccgaccctgaagagcgcccgggccctcttcgacagcctcttcttcaacgccgag
cgctacgacctctccgccgtcggccgactcaagctcaactacaagctcggtctcgagacg
ccgctggagcacaccaccctgaccaaggaggatatccttgaagtggtgcgctacctgatt
gacctgcgcaacggcaagggggccatcgacgatatcgaccacctcggcaaccgccgggtg
cgcgccgtcggcgagctgctcgaaaaccagtaccgggtcggcctggtgcgcatggagcgc
gccatcaaggagcgcatgagcctgcaggaagtcgacagcctgatgccccacgacctgatc
aactccaagccggtctcggcggtggtcaaggagttcttcggttccagccagctctcccag
ttcatggaccagaccaaccccctctccgagatcacccacaagcggcgcctctcggccctc
ggaccggggggcctgacccgcgagcgggccggcttcgaggtgcgcgacgtccatccgacc
cactacggccgcgtctgcccgatcgagaccccggaggggccgaacatcggcctgatcgcg
tcgctctcgacctatgcccgcatcaacgagcacggtttcgtcgagaccccctaccggctg
gtcaaggacggcaaggtcaccaccgatatccgctacttctcggccctcgaggaggagggg
catgccatcgcccaggcgaacgcgcccctcaacgaggacagcaccttcgtcaacgagctg
gtcaatgcccgcaagaacggcgagttcatgctgatgaaccgcgaggacatcgagctgatg
gacgtctcgcccaagcagctggtctcggtcgccgcctcgctgatccctttcctcgaaaac
gacgacgccaaccgcgccctgatgggctcgaacatgcagcgtcaggcggtgccgctgctg
cgggcagacgcgccgctggtcggtaccggcatggagcgcatcgtcgcccatgactcgggc
gccgcggtcgtcgctcgccatcacggcaccgtcgagagcgtcgacgcggcccgcatcgtg
gtgcgcatcgacgaaggggaagtcgacgagaccggcaccggtgtcgacatctacaacctg
atcaagttcatccgcagcaaccagaacacctgcctcaaccagaaaccgatcgtcaaggtc
ggcgacaaggtcaagcgcggcgagatcatcgccgacggcccctcgacccagtggggggag
ctcgccctcgggcagaacgtcctggtcgccttcatgccctgggaagggtacaacttcgag
gactcgatcctgatctccgagaagctggtcaaggaggaccgctacacctcgattcacatc
gaggagttcgagtgcgtcgcccgcgacaccaagctcggcaaggaagagatcaccgacgac
atccccaacctcggtgaggacgccctcgccgatctcgacgagagcggcattatccgcatc
ggcgccgaggttcagcccggcgacattctggtcggcaagatcaccccgaaaggggagacc
cagctctcccccgaggagaagctgctgcgtgccatcttcggcgaaaaggccggcgatgtg
cgcgatacctcgctgcgggtcccgccgggggtcgagggggtcgtcatcggcgcccgcgtc
ttctcccgcaagggggcggacaaggacagccgcaccgagatgatcgagaaggcggagatc
gacaagctgctcaaggatcagcacgacgagatccgcatcatccgcgactcgaccaagggg
aaactgaaatcgctgctggtcggtcagaccgcggcggtccaggtcgtcaacgagagcggg
accgtcctcgttgccaaggggaaaaagctgaccgaggaagccctcgatcagctgccgttc
ctcgcctggcgcgaaatctccctcgccaaggccgaggagatcgaagagaaggtggcgacg
gtctttttgcgcctcgccgaacgggaggacctgatcaagggggtttttgccgacaagatc
gagaagctcaagcgtggcgacgatctccccccgggcgtgatcaagatggtcaaggtctac
atcgccatcaagcgcaagctctcggtcggcgacaagatggccggtcgccacggtaacaag
ggtgtcctctcgcgcatcctccccgaagaagatatgccctacatggccgacggcaccccg
gtggagattgtcctcaatcccctcggcgtcccgtcccgtatgaacgtcggccagatcctc
gagacccacctcgggctcgccgcccgcggcctcggtctgcagatccaggaagtgctcgac
cgcgattacagcccggcggcgctgaagaagaaggtcaagacgatctacggcgacaaggag
ctcgccaagttcattgacggcctcggcgacgacgaggtgctggcgatgggacgccgcctc
gccggcggcatcccgatggcctccccggttttcgagggggtcaacgaagagcagatgaag
gccgaaatgaccagggccggcgtctccagcggcgggcagatgaccctctataacggcaag
accggcgaccccttcaaggaacaggtcaccgttggcatcatgtatatgctcaaactgcac
cacctggttgacgacaagatccacgcccgttccatcggcccctacagcctcgtcacccag
cagccgctgggcggcaaggcccagttcggtggccagcgcctcggcgagatggaggtctgg
gcgctcgaagcctacggcgcagcccatgcgctgcaggagttcctcaccgtcaagtccgac
gacgtcgccggccgcacccggatctacgaggcgatcgtcaaggggaagcataccctggag
gcgggactccccgagtccttcaacgtcctgatcaaggaactccagtcgctctgcctcgac
gtcgaactgctcgaggaagaagaggaatag
DBGET
integrated database retrieval system
