KEGG   Dehalococcoides mccartyi VS: DhcVS_286
Entry
DhcVS_286         CDS       T01136                                 
Symbol
nrdA
Name
(GenBank) ribonucleotide reductase
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
dev  Dehalococcoides mccartyi VS
Pathway
dev00230  Purine metabolism
dev00240  Pyrimidine metabolism
dev01100  Metabolic pathways
dev01232  Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:dev00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    DhcVS_286 (nrdA)
   00240 Pyrimidine metabolism
    DhcVS_286 (nrdA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dev03400]
    DhcVS_286 (nrdA)
Enzymes [BR:dev01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     DhcVS_286 (nrdA)
DNA repair and recombination proteins [BR:dev03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    DhcVS_286 (nrdA)
SSDB
Motif
Pfam: Ribonuc_red_lgC TSCPD Ribonuc_red_lgN Zn_Ribbon_YjdM NrdJ_rel_C NRDD Zn_Ribbon_TF
Other DBs
NCBI-ProteinID: ACZ61447
LinkDB
Position
280260..282545
AA seq 761 aa
MPVKVQVKSEIMADAKAEGLKLTDNAMCVLERRYLKKDKQGKPTETVEDMFRRVARTIAM
GELIYNPKADVRSREDEFYNLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIF
DAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTR
RGANMAILSIDHPDIMKFIHAKDKAGVLTNFNLSVAITDKFMQAVKDGADYDLLNPHNGE
VVSCLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES
CNLGSINLSRMVTVSGGKSTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIEEMTKKSRK
IGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSI
YEKSGRPMRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERA
AKEGGYYSEELIKSLAEGAHLDEADVPDEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAV
SKTVNFSRDAGECDVADVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVN
PNLMPRKRSKVTQGITERVTTGCGYIYVTVNSDEHGICEVFSSLGKAGGCASAQLESTCR
LISLALRSGMEVASVVKQLRGIRCPSIAWDESKAVLSCADAIASVLEKHVDGYTKPVAGS
AKTVSANALVRNIAGQCPECGSILVYQEGCFICPGCGYTKC
NT seq 2286 nt   +upstreamnt  +downstreamnt
atgccggtaaaagtacaagttaaatctgaaattatggctgatgccaaagctgaagggctg
aagcttacagataatgccatgtgcgtgctggaacgccgctatctgaaaaaagacaagcag
gggaagcccaccgaaactgtggaagatatgttccgcagggtggcccgtactattgccatg
ggggagcttatttataaccccaaggcagacgtaagaagccgtgaggacgagttttataac
ctgatgacccgtctggagtttttgcccaattctcccaccctgatgaatgccgggcgtgag
ctggggcagctttcggcctgtttcgttctgccggtagatgattccattgagtctattttt
gatgccgtaaagcataccgctatgatacataaaagcggcggcggcaccggcttttcattt
tcccgcctgcgtcccgaacaggaccgggtgggtactaccggaggggttgccagcgggcct
gtgtcctttatgcgcgcctttgatgtggcaactgatgttatcaagcagggcggcaccaga
cggggcgccaatatggctatattgagtattgaccaccctgatatcatgaagtttattcat
gctaaagataaggccggggtgctgaccaactttaatttgtcggtggctattaccgataaa
tttatgcaggcggtgaaagacggggctgattatgatttgcttaatccccacaatggtgag
gttgtttcctgtctgaatgctaccgaagtgtttaacaagattgtccacatggcctggaag
acaggtgatccgggtattgtgtttatagaccgcataaatgcttataatcccactccccag
ctgggacggattgaaagcaccaatccctgcggtgaacagccgctgctgccttatgaatca
tgcaatctggggtctataaatctgtcacgcatggtgactgtaagtggcggtaaaagtacg
gttgattataagaaactcagccgggtgataaagagtgcggttcgtttcctggataatgtc
atagatgtaaataaatttcctctgccccagattgaagagatgaccaaaaagagccgcaag
attggtctgggggttatgggttttgcggatatgcttttagaactgggtataccttacaat
tcggaaaactctatcaagctggcagaggaaataatgtgctttgtaaatgacgaagcacat
aaattctcttcagagctggcagtggagagaggtgtgtttcctgcttaccgcggaagtatt
tatgagaagagcggccgccctatgcggaatgcttcctgcactaccattgcacccaccggt
actctgtctattattgcgggctgttcttcgggtattgaaccccattttgccctttgtttc
acccgcaatatactggacggcaccaagatgatagaggttaacccgtattttgagcgggct
gctaaagaaggcgggtattattccgaggagcttattaaatctttggcggaaggagcgcat
ctggatgaggctgatgtgccagatgaggctaaagaactgttcgtaactgcccaccagatt
gtgccggaatggcatgtgcgtattcaggcggccttccagaaatgcactgataatgccgtt
tccaagacagtcaatttttcacgtgatgctggtgaatgtgatgtagccgatgtctacaag
atggctcatgcccgtaacctcaagggtattactatctaccgtgatggcagtcgcgaagat
cagcctatgtctaccggcaaggccgaaaataaaattgagaccccggcggcggttgttaac
ccgaatttgatgccccgcaaacgttccaaagtaacccagggtatcaccgaaagggttact
acgggttgcggatatatctacgttactgtaaactctgacgagcatggaatttgtgaggtg
ttttcctcactgggcaaagctggaggttgtgcctctgcccagctggaatccacctgccgg
cttatttcgctggcactgcgctcaggtatggaagtggcttcggtagtaaaacagcttaga
ggtatccgctgcccgtctattgcctgggatgaaagtaaagctgtgttaagctgtgccgat
gctatcgccagtgtgctggaaaaacatgtagacggttataccaagccggtggcaggttcg
gcaaaaactgtaagtgcaaacgctctggtaaggaatatagccgggcagtgccccgaatgc
ggcagcattttggtctatcaggaggggtgctttatctgccctggttgtggttatactaaa
tgctaa

KEGG   Dehalococcoides mccartyi VS: DhcVS_564
Entry
DhcVS_564         CDS       T01136                                 
Symbol
nrdJ2
Name
(GenBank) ribonucleotide reductase, cobalamin-dependent
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
dev  Dehalococcoides mccartyi VS
Pathway
dev00230  Purine metabolism
dev00240  Pyrimidine metabolism
dev01100  Metabolic pathways
dev01232  Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:dev00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    DhcVS_564 (nrdJ2)
   00240 Pyrimidine metabolism
    DhcVS_564 (nrdJ2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dev03400]
    DhcVS_564 (nrdJ2)
Enzymes [BR:dev01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     DhcVS_564 (nrdJ2)
DNA repair and recombination proteins [BR:dev03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    DhcVS_564 (nrdJ2)
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_lgN DUF8001
Other DBs
NCBI-ProteinID: ACZ61713
LinkDB
Position
529904..531703
AA seq 599 aa
MTVESGRQSVVIAARLSTTAKRVLEKRYLKKDADGRVIETPEDMFHRVARVVASAEYKYA
PGADISRIEEEFYQAMFRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQT
ALIHKSGGGTGFSFSDLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAA
ILDVTHPDILNFISCKGDPNALTNFYISVVVTRDFMTKVRNGEDYDIINPHTGEVVQRLN
AACVFDRIVDQAWKTGDPGLVFIDRINDDNPTPLLGRIKHVSGCGEQTLLPYESCNLGSI
SLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIEKATLRNRKVGLGVM
GFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKLAEVRGSFPAYEGSIYDVPGG
RPMRNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARRGG
FHSKELFEKLVSSNHLHDIECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDHAVSKTV
NFSHEATREDMANVFNMAYDKGLKGITVYRDGSRAAQPLCTCESGVKLVDQYLDNCSCR
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgacagtagaatccggcagacaatcagttgtgatagcagcacgtttatccactaccgcc
aaaagggtattggaaaagcggtatctcaaaaaagatgccgacggacgggtgattgaaacg
ccggaggatatgttccacagggtagctagagtagtagcttctgccgaatataaatatgca
ccgggtgcggatataagccgtattgaagaggaattttatcaggctatgttccgcctggag
ttcctgcccaattcacccaccttattgaatgctgggcggcaagtagggcagctttcagcc
tgttttgttttgccagtagaagactccattgaatctatttttgatgccgtaaaacagaca
gctcttattcataaaagcgggggcggtacagggttttcattctccgacctgcgtcctgcc
ggagataaggttggggaactcaccgaagtggccggcggcccggtctctgtaattaatata
tttgctgcagcagcagattatgtgcggcagggtggggttcgccgcgggtgtaacgccgct
attttagatgtaactcatcccgatatccttaattttatctcctgcaagggtgatccgaat
gccctgaccaatttttatatttcagttgtggtaacccgagacttcatgaccaaagtacga
aatggtgaagattacgatattatcaacccgcacaccggtgaggtagttcagcggctaaac
gccgcctgtgtgtttgaccgtattgtggaccaggcttggaaaacgggtgatccgggtttg
gtatttatagaccgtataaatgatgataatcccactccgttattagggcgcatcaagcat
gtaagcggttgcggagagcaaacccttctgccatatgaatcttgcaatcttggttcaatc
tctttgcctcgtatgctcaagcgtgatggcgaacgggtagtggtagactatgaaaagctg
gggcggacagttaaaatggctatccgctttctggataatgtaatagatgtaaacaagttt
cctactcccgaaattgaaaaagccacgctgcgtaaccgcaaggtaggcttgggggttatg
ggttttgccgatatgctggttttgatgggtataccatacaattccgaagaggctatattt
caggctgaccagataatggaatttattaaagaaacttcccaccgtgcttcgtcaaaacta
gccgaagtcagagggtctttccctgcttatgaaggcagtatttatgacgtaccgggcgga
cgccccatgcggaatgccacttgtaccagcatagctcccaccggcacgctttccattata
gccggggtatcttcgggtatagaaccttcgtttgctatggtatttgttaggaatatactt
gatggtgaaaacctgctggagataaacccgtattttgaagaaatggccagacgcggaggt
ttccattcaaaagagctgtttgagaaactggtttcctcaaaccacctgcatgatatagag
tgtataccggactggcttaaacgtctgctggttactgctcaccgcattcgccccgaatgg
catatccgtattcaggcagctttccaaaagtatactgatcatgctgtttccaagacggta
aatttctcccatgaggctacccgtgaggatatggcaaatgtgtttaatatggcctatgac
aaggggcttaaagggataacagtataccgtgacggaagccgggcagctcagcctttatgc
acctgtgaatcaggtgtaaagctggtagaccagtatctggataactgctcctgccgttag

KEGG   Dehalococcoides mccartyi VS: DhcVS_74
Entry
DhcVS_74          CDS       T01136                                 
Symbol
nrdJ1
Name
(GenBank) ribonucleotide reductase, cobalamin-dependent
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
dev  Dehalococcoides mccartyi VS
Pathway
dev00230  Purine metabolism
dev00240  Pyrimidine metabolism
dev01100  Metabolic pathways
dev01232  Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:dev00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    DhcVS_74 (nrdJ1)
   00240 Pyrimidine metabolism
    DhcVS_74 (nrdJ1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dev03400]
    DhcVS_74 (nrdJ1)
Enzymes [BR:dev01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     DhcVS_74 (nrdJ1)
DNA repair and recombination proteins [BR:dev03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    DhcVS_74 (nrdJ1)
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_lgN PRKCSH-like
Other DBs
NCBI-ProteinID: ACZ61247
LinkDB
Position
complement(66237..67994)
AA seq 585 aa
MKLSQNARIVLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFY
CMMTGFEFLPNSPTLLNAGRELGLLSSCFVLPVADSVEGISKTIGEAMVIHQYGGGTGFA
FDAIRPEDDPVKSGHTVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFI
RAKDEGNHSANFGINIALTDSFIQKVRLGADYELVNPRTGRVSGSLSAAEVFYRIARSSW
ETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLPYESATLGTINLSGMLLKEGNCC
RVDYPRLGGLITKAVRFLDDVLEVNRYPTAEVEKAAKATRKIGLGFMGFAEMLIKLGIRY
DSADAVSAADELMAFVKEAACQATEELALERGAFPAFAGSIYAKRGAKPRRNATCLTFTN
TGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKLLTG
ESPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPANASVEDIAD
LFLKAHELGLKGVTAYRDSSRESQVLCTGADCRDIARKYFEDCCV
NT seq 1758 nt   +upstreamnt  +downstreamnt
atgaaactaagccaaaatgccaggattgtgcttgaaaaacgctacctcaaacgggatggg
gacgggaatattgccgaatcctcggaggatatgttccgcagggtagcggacacggtggcg
gcggctgaaaatgcctataacccgcctggtaaggctgcctgtatggcagaagagttttac
tgcatgatgaccgggtttgagttcctgcccaattcgcccacccttctgaatgccgggcgg
gaactggggcttttatcctcctgttttgtattgccggtggcagattcggtggaggggata
tctaaaactatcggcgaagccatggttatccaccaatacgggggcggtaccggctttgcc
tttgatgctatacggccggaagatgacccggtaaaaagcggccatacggtggccggtggg
ccggtcaggctggtgggggtcttttcggaagcggccaactacataaagcaggccggggtg
cgctgcggctgtaattcggccagtctgccggtaaatcacccggatattttgaaatttatc
cgggctaaagatgagggtaatcactcggccaattttggcattaacatagctctgactgac
agctttatccaaaaggttagactcggggcggattatgagctggttaacccgcgcaccgga
agggttagcggcagtttatccgccgccgaggttttttaccgcatagcccgaagctcttgg
gaaacgggtgacccggggataatgtttattgaccgcataaataaagataaccccaccccc
cggcttggggaatttataactaccgacccctgcggcggacagcctttgctcccgtatgaa
tcagctactttggggacaataaacctgtccggtatgctcttgaaagaaggcaactgctgc
cgggtggattacccgcggcttggcgggctgattaccaaagctgtccgctttctggatgac
gtactggaagtaaaccgctatccgacagccgaggttgaaaaagcggctaaggccacccgc
aaaataggcctggggtttatgggctttgccgagatgctgataaagctgggtatccgctat
gattcagcggatgcggtatccgcggcagatgaacttatggcttttgtaaaagaagctgcc
tgccaagccacggaagaactggcactggaacggggagcttttccggcctttgctggcagt
atatatgccaaaaggggtgccaaacccagacggaatgccacctgccttacctttaccaat
accggcactaccagcatcattgccgatacctcggtcggtattcaccccatatattcgctg
gttatggtccgcaacatactggacgggcagcgtctgctggatataaaccatgcttttgaa
gaaaccgccagagagaggggctttttcagccctgcgcttatagaaaaactgcttacgggg
gaaagtccctgtaactgcccggagataccggaggattaccgccggttgctggttaccgcc
cgggatattcagccggaatggtgtatcagggtgcaggcagctttccagaaatatactgac
aatgctatttcccaaacggtcaatttccctgcgaatgcctcggttgaggatatcgcggat
ttattccttaaagcccacgaactgggtcttaaaggggttacggcttaccgtgacagcagc
cgggaatcgcaggtgctttgcaccggtgcagactgccgggatatagccaggaagtatttt
gaggattgctgtgtttaa

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