Devosia sp. D6-9: GHV40_09045
Help
Entry
GHV40_09045 CDS
T10671
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
devd Devosia sp. D6-9
Pathway
devd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
devd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GHV40_09045 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
devd03021
]
GHV40_09045 (rpoB)
03400 DNA repair and recombination proteins [BR:
devd03400
]
GHV40_09045 (rpoB)
Enzymes [BR:
devd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GHV40_09045 (rpoB)
Transcription machinery [BR:
devd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GHV40_09045 (rpoB)
DNA repair and recombination proteins [BR:
devd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GHV40_09045 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QMV01616
LinkDB
All DBs
Position
1813361..1817500
Genome browser
AA seq
1379 aa
AA seq
DB search
MATTFNGRRKVRKTFGRIREVTEMPNLIEVQKASYDQFLMVDEPKGGRNEEGLQAVFKSV
FPITDFSNTASLEFVKYEFEQPKYDVDECRQRDMTFAAPLKVTLRLIVFEVDEETGARSV
KDIKEQDVYMGDMPFMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAG
RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLKALGMDAEEILATYYNTLNYEKTK
TGWQVPYDWEKMKNAKPTHDLIDAKTGDVVHEGGKKLSARQAKKLAENGLTHLLAVDEDL
YGTYVAEDLINFQTGEVYVEAGDEIDEKLLNKLKELGFDALPILDIDHVNIGAYIRNTLA
VDKNESREDALFDIYRVMRPGEPPTVETAEAMFNSLFFDSERYDLSAVGRVKMNMRLDLD
VDDSVRILRKDDIVEVVRTLVNLRDGRGEIDDIDNLGNRRVRSVGELMENHYRLGLLRME
RAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPYR
KIVDGKVTEEVVYLSAMEEAKHYVAQANANLNGKGEFADDLVLARHAGDNGLTPKELIDL
MDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVARDS
GAAIVAKRKGIVDQVDATRIVIRATEETDASKSGVDIYNLMKFQRSNQSTCINQRPLVVV
GDHVEAGDIVADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSEKIAMQDVFTSIHI
EEYEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVHIGADVGPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGDAGTVVEVRVFNRHGIDKDERAMAIEREEI
ERLAKDRDDEQSILDRNVYARLKEMLFGKAATAGPKGYVVGTKLNDQMFEAQPRSKWWQF
AVEDDKVMTEMEALHAQYEESRRMLEQRFIDKVDKLQRGDELPPGVMKMVKVFVATKRKI
QPGDKMAGRHGNKGVVSKITPLEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWA
CAGVGKKIDEMVRIYQQNGDLKPLKLEIGQLFEGDDYVAGLDDDSMVRLGEHLSKGVHIA
TPVFDGAKEANIVEMLERAGLKSSGQSTVFDGRTGEQFDRQVTVGYIYMLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTIKSDDVAGRTK
VYEAIVRGDDTFEAGIPESFNVLVKEIRSLGLNVELDTAEAADDQQAEAELEPPQAAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgttcaacggccgccgtaaggtacgcaagactttcggccgcattcgcgaa
gtcacggagatgccgaacctgatcgaggtccaaaaggcctcctacgatcagttcctcatg
gtcgacgagcccaagggcggtcgcaatgaggaaggacttcaggctgtcttcaagtcggtt
ttcccgatcacggacttttccaataccgcttcgctcgaattcgtgaagtacgagttcgag
cagcccaagtatgacgtcgacgagtgccggcagcgcgatatgaccttcgccgcgccgctc
aaggtgacgctgcggctgatcgtgttcgaagtggacgaagaaaccggcgcccgctccgtc
aaggacatcaaggagcaggacgtctatatgggcgacatgcccttcatgacttccaacggt
acgttcatcgtgaacggcaccgagcgcgtcatcgtatcgcagatgcaccgttcgcccggc
gtgttcttcgaccacgacaagggcaagacccactcctcgggcaagctgctgtttgccggc
cgcattattccctaccgcggctcgtggctcgacatcgagttcgacgccaaggacatcgtc
tatgcgcgtatcgaccgtcgccgcaagattccggtgacctcgctgctcaaggcgctcggc
atggatgccgaggaaatccttgcgacctattacaacacgctgaactacgagaagaccaag
accggctggcaggttccctacgactgggaaaagatgaagaatgccaagccgacccatgac
ctgatcgacgccaagaccggcgacgtggtccatgagggcggcaagaagctttcggcccgc
caggccaagaagctcgccgagaacggcctgacccacctgctggctgtcgatgaagacctc
tacggcacctatgtcgccgaagacctcatcaacttccagaccggtgaagtctatgtagaa
gccggcgacgagatcgacgagaagctgctcaacaagctcaaggaactgggcttcgacgca
ctgccgatcctcgatatcgaccacgtcaatatcggcgcctacatccgcaacacgctcgcc
gtggacaagaacgagtcgcgtgaagacgcgctcttcgacatctaccgcgtgatgcgtccg
ggcgagccgccgacggtcgagaccgccgaagccatgttcaactcgctgttcttcgacagc
gagcgctatgacctgtcggccgtcggccgcgtcaagatgaacatgcgcctcgacctcgac
gtcgatgactcggtccgcatcctgcgcaaggacgacatcgttgaagtcgtccgcacgctg
gtgaacctgcgtgacggccgtggcgaaatcgacgacatcgacaacctcggcaaccgtcgc
gtgcgttcggtcggcgagctgatggagaaccattaccgtcttggcctgctccgcatggag
cgcgcgatcaaggagcgtatgtcgtcggtcgaaatcgacaccgtcatgccgcaggacctg
atcaacgccaagccggctgccgccgctgtccgcgagttcttcggctcgtcccagctgtcg
cagttcatggaccagaccaacccgctctcggaaatcacccacaagcgccgtctttcggct
cttgggcctggtggtctcacccgtgagcgcgccggcttcgaagtccgtgacgtgcatccg
acccattatggccgtatctgcccgatcgagacgccggaaggcccgaatatcggtctgatc
aactcgctggccacgttcgcccgcgtcaacaagtacggcttcatcgagacgccgtaccgc
aagatcgtggacggcaaggtcaccgaagaggtggtctacctctcggccatggaagaggcc
aagcactacgtcgcacaggctaacgcgaacctgaacgggaagggcgaattcgccgacgat
ctcgttctggcccgccatgccggcgacaacggcctgactcccaaggaactgatcgacctg
atggacgtgtcgcccaagcagatcgtttcggtcgccgcggcgctcatcccgttcctcgag
aacgacgacgccaaccgcgccctcatgggctcgaacatgcagcgtcaggctgtgccgctg
ctgcgtgccgaagccccgttcgtgggcacgggcatggagccggtcgtggcccgtgactcg
ggcgccgcgatcgtcgccaagcgcaagggcatcgtggaccaggtggatgcgacccgtatc
gttatccgtgccactgaagagacggacgcgtccaagtcgggcgtggacatctacaacctg
atgaagttccagcgttcgaaccagtcgacctgcatcaaccagcgtccgctggtggtggtg
ggcgaccacgtcgaagccggcgacatcgttgcggatggtccctcgaccgacctcggcgat
ctggctctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgaa
gactcgatcctcctgagcgaaaagatcgcgatgcaggacgtgttcacctcgattcacatc
gaggaatacgaagtgatggcccgcgataccaagctcggccccgaggaaatcacgcgcgac
attccgaacgtttcggaagaagcgctcaagaacctcgacgaagccggtatcgtccatatc
ggtgccgatgtcggcccgggcgatatcctggtcggcaagatcacgccgaagggcgaaagc
ccgatgacgccggaagagaagctcctccgcgccatcttcggcgagaaggcttcggacgtt
cgcgatacctcgctccgcgtgccgccgggcgatgctggtactgtcgttgaagtgcgcgtg
ttcaaccgccacggcatcgacaaggacgagcgcgccatggctatcgagcgcgaggaaatc
gagcgcctggccaaggaccgtgacgacgaacagtcgatcctggaccgcaacgtctatgcg
cgcctcaaggaaatgctgttcggcaaggcggctacggctggcccgaagggctatgtcgtg
ggcaccaagctcaatgaccagatgttcgaggctcagccccgttcgaagtggtggcagttc
gcggtcgaagacgacaaggtcatgaccgagatggaagctcttcatgcccagtatgaagag
agccgccggatgctcgagcagcgcttcatcgacaaggtggacaagctgcagcgcggtgac
gaacttccgccgggcgtgatgaagatggtcaaggtcttcgtcgcgaccaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggtaacaagggtgtggtgtccaagatcact
ccgctcgaagacatgccgtacctggaagacggcacgcccgtcgacatcgtgctgaacccg
ctcggtgtgccgtcccgcatgaacgtgggccagattctggaaacccacctcggctgggct
tgcgccggcgtcggcaagaagatcgacgagatggtccgcatctatcagcagaacggcgat
ctgaagccgctcaagctggagatcggccagctcttcgaaggtgacgactatgtcgccggc
cttgatgacgacagcatggttcgcctgggtgaacacctctccaagggtgtccatatcgct
accccggtgttcgatggcgccaaggaagccaacatcgtcgaaatgctcgaaagggcaggg
ctcaagtcctccggccagtcgaccgtctttgacggccgtaccggcgagcagttcgaccgt
caggtgaccgtgggctacatctacatgctcaagctgcatcacctggtggacgacaagatc
cacgcccgttcgatcggcccctactcgctcgttacccagcagccgctgggcggcaaggcg
cagttcggtggtcagcgtttcggcgaaatggaagtgtgggcgctcgaagcttacggcgcg
gcgtacaccctccaggaaatgctgacgatcaagtcggacgacgtggccggccgtaccaag
gtctacgaggccatcgtgcgcggcgacgacaccttcgaagcgggcattccggaaagcttc
aacgtgctggtcaaggaaatccggtcgctcgggctcaatgtcgagctcgatacggccgag
gctgccgacgaccagcaggccgaagcggagctggagcctcctcaggccgcggcggaataa
DBGET
integrated database retrieval system
