Cavenderia fasciculata (cellular slime mold): DFA_04838
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Entry
DFA_04838 CDS
T02668
Name
(RefSeq) tetratricopeptide-like helical domain-containing protein
KO
K12600
superkiller protein 3
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_04838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_04838
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
DFA_04838
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_8
TPR_14
TPR_19
TPR_17
TPR_1
TPR_CcmH_CycH
TPR_12
TPR_11
ANAPC3
ARM_TT21_2nd
ARM_TT21_N
ARM_TT21
ARM_TT21_C
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
14874945
NCBI-ProteinID:
XP_004360559
UniProt:
F4PM05
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MSILFIYVLSTYLSIIYIYACLKDSIFLNFSHTCVIFNAHFDIPSFINDDKTTMDVKIII
KQARDAIDKKDYKKALEICTDGLDFHNMNFNLHLFIGLCNFNLNKFKDSEDAYKNAQSIT
PSSPFPLRGLMDLYQKSGEGEKYIKVIKELIPHTTDAIKKRELQSKMVDHHIANQQFKEP
IEMLFDMLASIQQQQQQSLETDAVTTTTTTTSSSSSSSSSINSERLKILIKLESLVYQQK
QQQVKLLFENGMKEKNIPILNPAKAKVIGAPTHTPQQAQDKILIERNAYSKVLDSYNIKI
YKEIIESEDLLSLIEIKQVEKVYQNYIEYYMQKRFSVVGDSLEADQKREELKSIIYQECV
KMNRLLLYPFFPLETMILLLEENGKASTDTSILGISQLLTRMHPDRGLGWIGLGYYQVFH
QYDQSENTRSMLEMGLAQTPNSILGNVALGKIYLEQKNHDRLKDVVRKGLDSCSAKEKEN
GKFYDRYNIDLHLYLAESLLITYETENAVLVLEQVLKKHPNDTQTLFTLAKLYFDHQKFD
QSLGLFQKIIELESSSSTNNKQVQNLSKSMVIWIKLQQHDTVKIDQDTKDQIVTLLQNDD
GYLNHFLLGLYYRLVGENDQAVQEMLKSAQKNPSYALTFSNLGLLYKDKKDMERSKKCFQ
KALSLDILNYDAGIQLSSIYIANEQYTLASSLYQDITARCLESRKQLNINIAKCSWAFYR
LGLYQMDIGQLDNSCSNFLMALKGNPDNEQYWRGIGECYRRQIKYIASLKALKRAEELLV
SSNATAPDLNYQIASLNMTLGEYKEAIIEFDLVLASLPNHLPSFKGKADCYFQLATDHLK
SNYQRLAYLYLTLAEESCLKAIDSKQGDFESVWKLYGDISSHYHYLAPSSREDGGDIDYI
GKLEQATKSYLRCIEIQPLNFNSLYDLSLSNYYQYIRLSNKYNQEQKEKEKEILLQRLDT
LFKSSVKCITQAINHSPRQARYWNLLGVILIDKYPMQSQHAFIRSIQIDPSKSNPYNNLA
MLYLQNNKIDLSNSSLFISKSNDATFISSWSIQALIHELKNDSSQSYSEYSHIEIALESD
PSGEGLLSNGILCYYNGNIDRAELSLEVMGKEKDKKLNLQSNDIITLDSLSLSDNEIISY
RQGGAEDDPSLSISEPIKKFILINIARVQCKLESYQQSLVTLEPYIGATKEKSLSSSHIL
EIVGLANHHLGNSDKAIEYLKQSVAAIKPDIINDDGACKLRKVQLLLTMATICFKTNRLK
QCEQIIEKVIESDPNLENAYHLLASIYILSEEYRKATDTIKRLHNQTLHPTLQGLLILAR
CAILEQKFEKARTVLLKACHCFPNEISTWTWLAQFLNTYSSKDVTLSNIRQILYQQIEIQ
QQSLENINNGNLVKYQVEHIQLLEQLSKTFLFEISQPYSENIDNSINTTKKIIHINPNYL
GPWKQLSTLYYIRALHKSDQESFENALILNQLVRKLASEQSYIFTAEEMFLLDFGLGDIY
IYNSNQELFNNHHSKLMSTHKDDPILTSQLQRQLGRFDLLVQKDPLSSIANYKKSLQSNP
LNLISYQELSYIYEELKYYEASYHCLNRALSIIQQQIKESNNNKYSSQDNQNQYLILVCR
IVRYLILTKQTTVASKTLEEYLQSQKHQQNQQHPVILLFKRQETIKTTRE
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgagtattctatttatctatgttttatctacctatctatctattatctatatatatgcc
tgtttaaaagactccatttttttaaacttttctcacacttgtgtgatcttcaatgcgcat
ttcgatattccatcattcatcaacgacgacaagacgacgatggatgtaaagataataata
aagcaagcaagagatgcaatcgataaaaaggactataagaaagcattagagatttgtaca
gatggattagactttcacaatatgaactttaatcttcatctctttataggtctttgtaac
tttaatctcaacaaattcaaagacagtgaagatgcttataaaaatgctcaatctattact
ccttcttctccttttccattgagaggattaatggatttatatcaaaagagcggtgaaggt
gaaaaatatatcaaagtaatcaaggaattgatacctcacactacagatgcaatcaaaaaa
agagaacttcaatctaaaatggttgatcatcatattgctaatcaacaattcaaagaacct
atagaaatgttgtttgatatgttggcttctattcaacaacaacaacaacaatcactcgaa
actgatgcagtcacgaccaccaccaccaccacctcctcctcctcctcctcctcctcctct
atcaatagtgaaagattaaagatattgataaagttagagtcacttgtttatcaacaaaaa
caacaacaagtaaagcttttattcgagaatggaatgaaggaaaagaatattccaattctt
aatccagccaaggcaaaagtcatcggtgcaccaacacatacacctcaacaagctcaagat
aaaatattaattgaaagaaatgcctattcaaaggttttagattcttataatattaaaatt
tacaaagaaattatagaatctgaagatttattatcattgattgaaattaaacaagttgaa
aaggtttaccaaaactatatcgaatattatatgcaaaagagattttctgttgttggtgat
tctttggaagcggatcaaaaaagagaggaattaaaaagtataatataccaggaatgcgtt
aaaatgaatagattacttctctatccattctttccactagaaacaatgatattgctttta
gaggaaaacggcaaagcatccactgatactagtattttgggaatttctcaattgttgact
agaatgcacccagacagaggattgggttggattggtttgggctactaccaagtattccat
caatacgatcaatcagaaaatactagatccatgttggaaatgggtttggcgcagacaccc
aattcaatacttggaaacgttgctcttggtaaaatatatcttgaacaaaagaatcacgat
cgtctcaaagatgttgtcagaaagggattagactcttgttctgccaaggaaaaggaaaat
ggaaaattctatgatcgatacaacattgatcttcatctctacctcgccgaatcattattg
attacctatgaaacggaaaatgctgtattggttcttgaacaagttctaaaaaaacatcca
aacgacactcaaacactctttacattggcaaaattatattttgatcatcaaaagtttgat
caatcacttggactattccaaaaaataatcgaactggaatcatcatcatcaacaaacaac
aaacaggttcaaaacctttcaaaatcaatggtcatttggattaaactacaacaacatgac
actgtcaaaatcgatcaagataccaaagaccaaattgtcacactattacaaaacgatgat
ggatatcttaatcattttttgttaggattatattatcgtttggtcggtgaaaatgatcaa
gccgtccaagaaatgttaaagagtgcacagaaaaatccatcctatgcattgaccttttcg
aatctaggtctattgtacaaggataaaaaagatatggaaagatcaaaaaaatgtttccaa
aaagccctctcactcgatattctcaactatgacgctggtatacaactatcaagtatttat
attgcaaatgaacaatatacattggcgtcgtcactctaccaagatattactgcacgttgc
ttggagagtagaaaacaactaaatatcaacattgcaaaatgttcgtgggcattttataga
cttggtctctatcaaatggacattggacagttggacaactcttgttcaaactttttgatg
gcactcaaaggaaacccagataatgagcaatattggagaggtattggtgaatgctataga
cgtcaaatcaagtatattgcatcactaaaagctctcaagagagctgaagaactccttgtt
tcatccaatgcaacggctccagatctcaactatcaaattgcctctctcaacatgacactt
ggagaatacaaagaagccatcatcgagtttgatttggtacttgcctctctaccaaaccat
ttaccttctttcaaaggaaaggctgattgttactttcaattggcaactgaccatctcaaa
tccaattaccaaagactcgcttatctttatttgacattggcagaggaaagttgtcttaaa
gccatcgactcaaaacaaggagactttgagagtgtttggaaattgtatggtgatatatca
agtcactatcactatttggcacctagctcaagagaggatggaggtgatatagattacatt
ggcaagttggaacaagccacaaagtcttaccttagatgtatcgaaattcaaccactcaac
tttaactcgctctatgatttgtcattgtcaaattattatcaatacattagactctccaac
aaatacaatcaagaacaaaaggaaaaagaaaaggaaattcttttacaacgattagacacg
ttatttaaatcatcggtaaagtgtattacccaagcaattaaccattcaccaagacaagca
agatactggaatttattgggtgtcattctcattgataaatatccaatgcaaagtcaacat
gcatttatcagatcaattcaaatcgatccaagtaaatcaaacccctacaataaccttgca
atgttgtatttgcaaaataacaagattgacctatccaactcatcattgtttatcagcaaa
tccaatgatgccacttttatttcttcatggtccattcaagctttgattcatgaactaaag
aatgattctagtcaatcttattctgaatattcccatattgaaattgccttggaatctgat
ccctctggtgaaggattattaagtaatggtattctttgttattataatggtaacattgat
cgtgcagaattatctctagaggtgatgggcaaagaaaaagataaaaagcttaatctccaa
agcaatgatattattactcttgattcattgtcattgtcggataatgaaatcattagctac
agacaaggaggagcagaggatgacccctcattatcaatatctgaaccaattaaaaagttt
attttgataaatattgctagggtccaatgcaaacttgaatcttaccagcaaagtctagta
acattggagccatacattggagctacaaaggagaaatctttgtcttcaagtcacattttg
gaaattgtaggcttggccaaccatcatctcggaaacagtgacaaagccattgaatatcta
aaacagtcggtcgctgccatcaagccagacattatcaatgacgatggtgcatgcaaacta
cgtaaagttcaattattattgacaatggccactatttgttttaaaacaaatcgtttaaaa
caatgtgaacaaatcattgaaaaggttatcgaatcggatcccaatttagaaaatgcctat
catcttttggcctcgatctatatcttgtcggaagaatacagaaaagcaacggataccatc
aaaaggctacacaaccaaactcttcatccaaccctacaaggtctcttgatccttgccaga
tgcgcaatactcgaacaaaagtttgaaaaggctagaactgtcctcttaaaggcatgccat
tgcttccccaacgaaatctcaacatggacttggttggcccagttcctcaacacctactct
tcaaaggatgttacattatcaaatattcgtcaaatattgtaccaacaaatagaaatccaa
caacaatcgctcgagaatatcaacaatggcaatcttgtcaaataccaagtcgaacacatc
cagctgttggaacaactatccaaaaccttcctctttgaaatttcacaaccctactctgaa
aatattgacaattccatcaacactaccaagaagatcattcatatcaaccccaactacctc
ggtccttggaaacaactgtccacattgtactatatccgtgcactacataaatctgaccaa
gagtcttttgaaaatgccctcattttgaatcaactggtcagaaagctcgcatctgaacag
tcctatatctttacagccgaagaaatgttccttttagactttggactcggtgatatctac
atttataattccaatcaagaactattcaacaatcatcactccaagttaatgtcaacccat
aaagatgaccccatactcacttcacaattgcaacgacaacttggtagattcgatctattg
gttcaaaaagatcctttatcatcaattgcaaattataagaaatctttacaatcaaatcct
ctaaatcttatttcttatcaagaactatcatacatttatgaagaattaaaatactatgaa
gcatcatatcattgtttaaacagagcattgagtattattcaacaacaaatcaaggaatcg
aataacaacaaatacagtagccaagataaccaaaaccaatatttaattttggtttgcaga
atcgttcgatatttgatattgaccaaacaaacaactgtagcatccaagactttggaagag
tatctccaatcccaaaaacatcaacaaaaccaacaacacccagtcatccttttgttcaag
agacaagaaaccatcaaaacaactagagaatga
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