Desulfovibrio fairfieldensis: AXF13_11825
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Entry
AXF13_11825 CDS
T04293
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfi
Desulfovibrio fairfieldensis
Pathway
dfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF13_11825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfi03019
]
AXF13_11825
03009 Ribosome biogenesis [BR:
dfi03009
]
AXF13_11825
Enzymes [BR:
dfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXF13_11825
Messenger RNA biogenesis [BR:
dfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF13_11825
Ribosome biogenesis [BR:
dfi03009
]
Prokaryotic type
rRNA helicases
AXF13_11825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Acid_PPase
Motif
Other DBs
NCBI-ProteinID:
AMD90754
UniProt:
A0A120KMA3
LinkDB
All DBs
Position
complement(2790064..2791689)
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AA seq
541 aa
AA seq
DB search
MSEDLSDTTMPGADVSAPEPAEDAAPLATEELSVSEPENALPKVGLADLPEAMRAACARA
GWQSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLDPELKAPQALVLAPTR
ELAVQVEREAAVIFADTGIRTVAVYGGVGYKKQMDALREGAQVIVGTPGRVLDHLLRRTL
DLKDLRVLVFDEADRMLSIGFYPDMKEVQRYLPKKRIHTCLFSATYPPHVLKLAAEFMSE
PALLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETENPASAIIFCNTKANVHYVTGV
LQGFGYSADELSADLSQNRREAVLDKIRKGRLQYLVATDVAARGIDIPALSHVFLYEPPE
DHESYIHRAGRTGRAGAAGTVISLVDVMQRMELERIAKHYKIGLMELPLPTDEDVAKVAG
TRLTAILEARFRTLTGLERVRVARYAALARELAQQSEEEDDVQLLAMLLDACHQQSLHEN
RFPDSEPVPARRKNDAGDAPRSRVDAAGRSEAEPHDGSRKRRRRSPRRRKDGGDSDAGTE
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagatctctccgataccacaatgcccggcgcggacgtttccgccccggaaccg
gcggaagacgccgctcccctcgccacggaggaactctccgtcagtgagccggaaaacgcc
ctgcccaaagtcggcttggccgacctgcctgaagccatgcgcgcggcttgtgcccgcgcg
ggctggcagagcctgatgccggtgcaatccctggctttgccctatctgctggaagggcgg
gacatcatggtccagtcgcgcacgggcagcggcaagaccggctgctatctgctgcccatg
ctgccccgcctggatccggaactcaaggccccgcaggccctggtgctcgctcccacgcgt
gagctggccgtgcaggtggaacgcgaggccgccgtgattttcgcggataccggcatccgg
accgtggccgtgtacggcggcgtgggctacaaaaaacagatggacgccctgcgcgagggg
gcccaggtcattgtgggcacgccgggccgcgtgctggaccacctgctgcgccgcacgctg
gacctcaaggacttgcgtgtgctggtctttgacgaggccgaccgcatgctgtccatcggt
ttttacccggacatgaaggaagtgcagcgctatctgcccaaaaagcgcatccacacctgc
ctgttttccgccacgtatccgccgcacgtgctcaagctggccgccgagttcatgtcggaa
ccggccctgctttccctgtcccagaaagaggtccatgtggccgaggttcagcacctcttc
tgcgaggtcaagccaatggacaaggacagggccctggtacgcctgctggaaacggaaaat
ccggcttcagccattattttctgcaacaccaaggccaatgtgcactatgtgaccggcgtg
ctccagggcttcggctacagcgccgacgagctttcggcggatctttcgcagaacaggcgc
gaggccgtgctggacaaaatccgcaagggccgcctgcaatatctggtggctacggacgtg
gccgcgcggggcattgatattccggccctgtcgcacgtctttctttatgagccgccggag
gaccatgaaagctacatccaccgcgccgggcgcacggggcgcgccggggccgcgggtacg
gtgatttccctggtggacgtgatgcagcgcatggagctggagcgcatcgccaagcattac
aagatcgggctcatggaactgcccctgcccacggacgaagacgtggccaaggtggcgggc
acgcgcctgaccgccattttggaggcgcgcttccgcacgctcaccggcctggaacgcgtg
cgcgtggcccgctacgcggccctggcgcgcgaactcgcccaacagagcgaggaagaggac
gatgtccagctgctggccatgctgctggacgcctgccatcagcagagcctgcacgaaaac
cgctttcccgacagcgagcccgtgcccgccaggcgaaagaatgatgccggggatgccccg
cgttcccgcgtcgatgccgccggccgcagtgaggccgagccgcatgacggcagccgcaaa
cgccgtcggcgttcgccgcgcaggcgcaaggacggcggcgacagcgacgccgggacggaa
agctga
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