Dickeya fangzhongdai DSM 101947: CVE23_01180
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Entry
CVE23_01180 CDS
T05277
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVE23_01180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfn03021
]
CVE23_01180 (rpoB)
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_01180 (rpoB)
Enzymes [BR:
dfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVE23_01180 (rpoB)
Transcription machinery [BR:
dfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVE23_01180 (rpoB)
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVE23_01180 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ATZ92709
UniProt:
A0A2K8QGT2
LinkDB
All DBs
Position
253075..257103
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIA
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILDLFFDKVVYEIHNNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLAKD
YVDESTGEVIAMANMELSLDLLAKLSQAGHKRLDTLFTNDLDHGPYMSETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFIEELVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGLVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHDVLVAGGIEADKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKENEIKELLK
LGDLPTSGQIRLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttgggaaacgtccacaa
gttctggatatcccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggccagtacggtctggaagcggcattccgttccgtatttcctatcgca
agttacagcggtaattccgagctgcagtacgtgagttatcgtctgggtgagccggtattt
gacgttcaagagtgtcaaatccgcggtgttaccttctccgcgccgctgcgcgtgaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtgtacatgggcgagattccgctcatgaccgacaacggtacctttgtcatcaatggt
actgagcgtgttatcgtttctcagttgcatcgtagcccgggcgtcttctttgacagcgac
aagggtaaaacccactcttccggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggattttgaattcgacccgaaagacaacctgtttgtccgtatcgaccgt
cgccgtaaactgcctgctaccatcattctgcgtgcgctgagttactccaccgaagaaatt
ctggatctgttcttcgataaagtggtgtacgaaatccacaacaacaagctgcagatggag
ctggtgccggaacgtctgcgtggcgaaaccgcgtcgttcgacatcgaagctgacggtaaa
gtctacgttgagaaaggccgccgcatcaccgcgcgccatattcgtcagctggaaaaagac
ggcatcgagcgcattgaagtaccggtcgaatacatcgccggtaaagtgctggctaaagat
tacgtggatgaaagcaccggtgaagtgatcgcgatggcgaacatggaactgtcgctggat
ctgctggctaaactgagccaggcgggtcataagcgtctcgacacgctgttcaccaatgat
ctggaccacggtccgtacatgtccgagaccctgcgtgtcgacccgaccaacgatcgcctg
agcgcgctggtcgaaatctaccgcatgatgcgtccgggcgagccgccgacacgtgaagcg
gccgagacgctgttcgaaaatctgttcttctccgaagatcgttacgatctgtccgcggtt
ggtcgtatgaagttcaaccgttccctgctgcgcgaagaaatcgaaggttccgggattctg
agcaaagcggacattatcgatgtgatgaaaaaactcatcgatatccgtaacggtaagggt
gaagtcgacgatatcgaccatctgggcaaccgtcgtatccgttccgtgggcgaaatggcg
gaaaaccagttccgcgtcggtctggtgcgtgttgaacgtgcggtgaaagagcgtctgtct
ctgggcgatctggatacgctgatgccgcaggacatgatcaacgccaagccgatttccgca
gcggtgaaagagttcttcggttccagccagctgtcccagtttatggatcagaacaacccg
ctgtccgaaattacgcataaacgccgtatttccgcattgggcccaggcggtctgacccgt
gagcgcgccggctttgaagttcgagacgtacacccgacccattacggccgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactcgctgtctgtgtacgcgcag
accaacgaatacggcttcctggaaaccccgtatcgccgtgtacgcgatggcgtggtgacc
gacgaaatccattacctgtcggcgattgaagaaggcaactacgttattgctcaggcgaac
accaacctggatgacgaaggtcacttcatcgaggaactggttacttgccgtagcaaaggc
gaatccagcttgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcgtccctgattccgttcctggaacacgatgacgccaaccgcgccctg
atgggtgcgaacatgcaacgtcaggcggtaccgactctgcgcgctgacaagccgctggtg
ggcaccggtatggaacgtgcggtcgcggtggactccggtgtaaccgccgttgccaaacgc
ggcggtctggtccagtacgtggatgcgtcccgtatcgtgatcaaggttaacgaagatgaa
atgtacccgggcgaagccggcatcgacatctacaacctgaccaaatacacccgttccaac
cagaacacctgcatcaaccagatgccgtgcgtgtcgctgggcgagccggttgagcgcggc
gatgtgctggccgacggcccgtccaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtcgcgttcatgccctggaacggttacaacttcgaagactccatcctcgtttccgag
cgtgtggtgcaggaagaccgttttaccaccatccacattcaggaactggcgtgcgtgtct
cgtgacaccaagctggggcctgaagagattactgccgatatcccgaacgtgggtgaagca
gcgctctccaagctggatgaatccggcatcgtttacatcggtgcggaagtgaccggcggc
gatattctggtcggtaaagtgacgccgaaaggcgaaacccagctgacgccggaagagaaa
ctgctgcgcgccatcttcggtgagaaagcgtctgacgtgaaagactcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgtgcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaagcaggcgaagaaagacctg
actgaagaactgcagattctggaagccggcctgtttgcccgtatccatgacgtgctggtt
gccggcggcatcgaagcggacaaactggacaagctgccgcgcgagcgttggctggaactg
ggtctgaccgacgaagagaagcagaaccagctggagcagttggccgagcagtatgatgaa
ctgaaacacgaattcgagaagaaactcgaagccaaacgccgcaaaatcacccagggtgat
gacctggcgccgggcgtgctgaagatcgtcaaagtgtatctggctgttaagcgtcagatc
cagccgggtgacaagatggcaggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaggatatgccttacgacgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccgtcacgtatgaacatcggtcagattctggaaacccacctgggtatggct
gccaaaggcatcggcgacaagatcaacgccatgctcaagcagcagcaggaagtggccaag
ctgcgcgagtttatccagagagcttatgacctgggtaacgacgtgcgccagaaagtcgac
ctgaacaccttcagcgatgaagaagtgctgcgtctggcggaaaatctgaagaaaggtatg
ccgatcgccacgccggtgttcgacggtgccaaggaaaacgagatcaaagagttgctgaaa
ctcggcgatctgccgacttctggtcagatccgtctgttcgacggccgtaccggcgagcag
ttcgagcgtccggttaccgtgggctacatgtacatgctgaaactgaaccacttggtggat
gacaagatgcatgcccgttctaccggctcttacagcctggttacccagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggcgcagcctataccctgcaggaaatgctgacggtgaaatccgatgacgtgaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccggatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctccctgggtatcaacatcgagctggaa
gaagagtaa
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