Dickeya fangzhongdai DSM 101947: CVE23_03635
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Entry
CVE23_03635 CDS
T05277
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVE23_03635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfn03019
]
CVE23_03635
03009 Ribosome biogenesis [BR:
dfn03009
]
CVE23_03635
Enzymes [BR:
dfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVE23_03635
Messenger RNA biogenesis [BR:
dfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVE23_03635
Ribosome biogenesis [BR:
dfn03009
]
Prokaryotic type
rRNA helicases
CVE23_03635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATZ93148
UniProt:
A0A2K8QJE2
LinkDB
All DBs
Position
761369..763249
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AA seq
626 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLSKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVVERRPRREFRERDERFERRGDRNDRGPRGEDRPARRER
RDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD
LLSHFTRTRILNKPMNMQLMGDAQPHERRERREGGERGDRGGRSFGERAGAGNGRGRPFN
GERREGGERRGGSRDGQRAPRRFSNA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagtctggggctgtccgctccgattctgaatgca
ctgtctgagatggggtacgaaaagccgtccccgattcaggcggaatgtattcctcatctg
ctcaacgggcgcgacgtactgggtatggcgcagaccgggagcggcaagaccgcggcattt
tccctgccgctgctgaacaatatcaaggctgacctgaaagcgccgcagttgctggtgctg
gcgccgactcgtgagttggcggtgcaggttgctgaagcctgtaacgaattttctaaacat
atgcagggcgtcaacgtggttgctctgtatggcggccagcgttatgacgtgcagttgcgc
gcgctgcgtcagggaccgcagattgtcgtcggtaccccggggcgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagcggtctggtgctggacgaagctgacgaa
atgctgcgcatgggcttcatcgaagatgtggaaaacatcatggcgcagatcccggctgaa
catcagacggcgctgttctccgccaccatgccggaagcgattcgtcgtatcacccgccgt
ttcatgaacgatccgcaggaagtccgcattcagtccagcgtgaccactcgtccggatatc
agccagagctactggacggtatacggcatgcgtaaaaatgaagcgctgatccgtttcctg
gaagcggaagattttgatgcggcgatcattttcgtgcgcaccaagaacgccacgctggaa
gtggccgaagcgctggagcgcagcggttacaacagcgctgcgctgaacggcgacatgaat
caggcgctgcgtgaacaaacgctggagcgcctgaaagacggtcgtctggatatcctgatc
gcgaccgacgttgccgcgcgtggtctggatgttgatcgtatcagcctggtagtgaactac
gacatcccgatggattccgagtcctacgtacaccgtatcggccgtaccggtcgtgctggc
cgtgccggacgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaacatt
gagcgcaccatgaagctgacgattccggaagtggatctgccgaacgccgaactgctgggt
cagcgccgtctggcgcagtttgccgctaaagtacagcagcaactggaaagcagcgatctg
gacatgtaccgtgcgctgctcagcaagctgcaaccgcaggaagagctggacatcgaaacg
ctggcagccgcgctgctgaagatggcgcagggcgaacgtccgctgattctgccgccggat
ccggtggttgagcgtcgtccgcgccgtgaattccgcgaacgcgacgagcgcttcgaacgt
cgtggcgaccgtaacgatcgtggcccgcgtggcgaggatcgtccggctcgtcgtgagcgt
cgtgacgtcggcgaaatggatctgtatcggatcgaagtgggtcgcgacgacggcgtggaa
gtgcgtcatatcgtgggcgcgattgctaacgaaggcgacatcagcagccgttacatcggc
aacatcaaactgtttgcctcgcactccaccattgagctgccgaaaggcatgccgggcgat
ctgctgtcgcacttcactcgtacgcgtattctgaacaagccgatgaatatgcaactgatg
ggcgatgctcagccgcatgaacgccgtgagcgtcgtgaaggcggcgagcgcggcgatcgt
ggtggtcgtagctttggcgagcgcgccggtgccggcaatggccgcggtcgtccgttcaat
ggcgaacgtcgtgaaggcggcgaacgtcgtggcggcagccgtgacggtcagcgtgcgccg
cgtcgtttcagcaatgcctga
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