Dermatophagoides farinae (American house dust mite): 124491979
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Entry
124491979 CDS
T08043
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03008
Ribosome biogenesis in eukaryotes
dfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124491979
09123 Folding, sorting and degradation
03018 RNA degradation
124491979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124491979
03009 Ribosome biogenesis [BR:
dfr03009
]
124491979
03016 Transfer RNA biogenesis [BR:
dfr03016
]
124491979
03036 Chromosome and associated proteins [BR:
dfr03036
]
124491979
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124491979
mRNA degradation factors
5'-3' decay
5' exonucleases
124491979
Ribosome biogenesis [BR:
dfr03009
]
Eukaryotic type
Pre-60S particles
RNases
124491979
Transfer RNA biogenesis [BR:
dfr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124491979
Chromosome and associated proteins [BR:
dfr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124491979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
Motif
Other DBs
NCBI-GeneID:
124491979
NCBI-ProteinID:
XP_046910682
LinkDB
All DBs
Position
Unknown
AA seq
1484 aa
AA seq
DB search
MGVPKFYRWLSERYPCINEYVNQYNIPEFDNFYVDMNGVFHICSHPSDDVHFRIPESQIF
ENIATYLNFLFNLVQPRKVFFLSVDGVAPRSKMNQQRSRRFKSAQEAIEKETKARRMGQT
LPNDPRFDSNCITPGTEFMNKLHLFMVEFLAKKIQNCQEWREVEIIYSGYDVPGEGEHKI
MDYIRYCKTKDSFESDTRHCLYGLDADLINLGLSTHEPYFSVLREEVTFGKNKQRHCDPI
RTNFQLLHLSILRRYIFHEFHELEQQMKFKFDLEKIIDDWILINFLVGNDFLPHVPKFHI
NKGGIQILYDTYKSILPDLDGYLNDSGTLNLKRYQKFLAKLSEHDLDIFNQNNMDFNFID
DVNDITFGSGVDLGQNFDFEKMQELTEENSLLSDSDSSSDLDDSSSENELDEEFVMHKNH
YYTTKLGFKDLAADVPKIVFEYVKGIQWVLHYYFDGCVSWNWFFPFHYGPYVSDLAKIDT
SEEFPFEMGTPFQPLVQLLAVLPQASKDILPKAFQKLTYIPDSPLIDYFPNEFKTDLNEK
IHDYEAIILIPFMDDQLLMETFEQYKNGLTSEEIERNRFGFHHLLKWSEESPENPDAFDL
NRFPNVFDHKIFINQYVLPREIVYKGVRKNVNLNAVNGFPSFNGIDYSVRMENARIKVFD
FGSQNPTMMIDVEKKNYTIESIQLLSKNFTEKIVYINWPLLAEAKLIEIIDNEFKYSKDI
KLKITPEELRSAKISSRNHCLMMKNKKGIILESVEQMVKVLPLQSQRYIITGGRIQLHKE
WSTTSQYVPIELVIFESSTALYRSLPVYKSLHTIFTKGKSFYLIANPYYGYKATVMKYLA
KNNTVQANVVVSSEPDFSEIEMEYAYIMSENYYTEGRVAFIVKRELNLPESVIRRLLGSV
LCSYQTNKGRVKRVNVGLKLKSRHDGQLYCVPGYSCMDQDEIFFHKNVINILLEYHGKFP
HVFQMLINHKPIYELDNLFPGPNLEQCEKTKSLNSIRDWLDLQEFSKIGTTRGNANYLDN
CIVKAIEERIESHMVLLCEEQTFTQKLHPSSFYIPEFILKGSYLPDAKVNFELFDRVVNI
KTSIIVPFGAKGTVIGIYSGNDHLTKFTRYNEQDEEERKDNDCLLSSTIEVMFDEPFDGG
FSERSSKSNIFKMHASFLINISHGLRMSKKNINFKNVYQPIQSAGHKQSNYYQNNARPYY
NNNNQLQTQKSNNVPNNNASKIQIMPRPEQQLQQTNESPNKFNHSENSPFKAIPKPSYAG
IVVGSNIQEQFPLQQQAFQPSLGAIKFPNSLPLPTTWSPDALGQMFSGINIRHANPSQAN
NASMNKIELPRKSEIPAPPSHWIKSLGSKAMENLQDPQLLIPSFTVSSSSQAMINNDIIS
NNDTIQNPLNDMNKIWNQQSTRYDNHNRYFRPEQNRKYHNRNHHYHNRNNEHNTQLHHNQ
QQYTPNQSTPIKQQSESTRFVPLVVARNHQHENVLRRQNINHNQ
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccaaagttttaccgatggcttagtgagcgttatccttgtattaatgaatat
gttaaccaatacaatatcccagaatttgacaatttttatgttgacatgaatggcgtattt
cacatatgttcacatccaagtgatgatgtccactttcgaatacctgaatctcaaatattt
gaaaatattgccacttatttaaattttctattcaatttggttcaaccacgtaaagtattc
tttctatctgttgatggtgtggcaccaagatccaagatgaatcaacaaagatcacgccgt
tttaaatcagcacaagaagccattgaaaaagaaaccaaagccagacgtatgggtcaaaca
ttaccaaatgatccacgtttcgattctaactgcattacaccagggactgaattcatgaac
aaattacatttgtttatggtggaatttcttgctaaaaaaattcaaaattgtcaagaatgg
cgtgaagttgaaattatttattctggctatgatgttcctggcgaaggcgaacataaaatt
atggattatattcggtattgtaaaaccaaagattcattcgaatctgatacgcggcattgt
ttgtatggacttgatgccgatctaattaatcttggacttagcacacacgaaccatatttt
tccgtgttgagagaagaagtgacatttggcaaaaacaaacaacgacattgtgatccgatt
cgtacaaattttcaattattgcatctttccattttacgaagatatatttttcacgaattt
cacgaacttgaacaacagatgaagttcaaatttgatctggaaaaaattattgacgattgg
attctcatcaattttctagttggaaacgatttcttgcctcatgtcccgaaatttcatatt
aacaaaggtggcattcaaattctatatgatacatacaaatctatattgcctgatctggat
ggttatctcaacgactctggtactttgaatttaaaaagatatcagaaatttttggcaaaa
ttatcggaacacgatttggacatttttaatcagaacaatatggatttcaatttcatcgat
gatgtaaatgacataacgtttggcagtggcgtagatttaggacaaaattttgatttcgaa
aaaatgcaagaattaaccgaagaaaattctcttctttctgattcagattcatcatcggat
cttgatgattcatccagcgaaaatgaattggatgaggagtttgtcatgcacaaaaatcat
tattatacaaccaagttgggattcaaagatttagcagccgatgtaccaaaaattgttttt
gaatacgtcaaaggtattcaatgggttctgcattattatttcgatggttgtgtttcatgg
aattggttctttccattccattatggcccatatgtatctgacctggccaaaattgatact
tcagaagaatttccttttgaaatggggacaccttttcagccattagtccaattattagcc
gttcttcctcaagcaagcaaagatattctgcccaaagcttttcaaaaacttacctacatt
cctgattcacccctcatagattattttcctaatgaattcaagactgatttaaatgaaaaa
atccacgattacgaagctattattttgataccattcatggatgatcaattgttgatggaa
acatttgaacaatacaaaaatggcttgacttctgaagaaattgaacgtaatcgatttggc
tttcatcatctattgaaatggtccgaggaatctccagaaaatccagatgcttttgatttg
aatcgatttccgaatgtattcgaccacaagatttttattaatcaatacgttctacctcgt
gaaatcgtatacaaaggtgtaaggaaaaatgtcaatttgaatgctgtcaatggatttcct
tcattcaatggcattgattattctgtacgaatggagaatgctcgtattaaagtatttgat
tttggctctcaaaatcccactatgatgattgatgttgaaaagaaaaattatactattgaa
tctatacaattattgtcaaaaaattttaccgaaaaaatcgtctatattaattggccatta
ttggctgaggcgaaattgatcgaaataatagacaatgaatttaaatattcgaaagatatt
aaattaaaaataactcctgaggaattacgttctgcaaaaatatcatcaagaaatcattgc
ctaatgatgaaaaacaagaaaggaatcatattggaatccgttgaacagatggtcaaagtt
ttgccattacaatcacaacgatatattataactggtggaagaattcaacttcacaaagaa
tggtcaacgacatctcaatatgttcctatagaattagtcatttttgagagttcaaccgcc
ttatatcgatctttaccagtctataaatctttgcatacaatatttacaaagggtaaatcg
ttttacttaattgcaaatccttactatggttacaaagcaacagtgatgaaatatttggca
aaaaataacactgttcaggcaaatgtcgttgtttcgtcggaacctgattttagtgaaatt
gagatggaatatgcctacattatgagtgaaaattattacactgaaggtcgagtggcattt
atcgttaaacgcgaactgaatttacccgaaagtgttataagacgtttattgggctcagtt
ttatgcagctatcaaacaaacaaaggtcgggtcaagcgtgtcaacgttggacttaagctt
aaatctcgacatgatggtcaactctactgtgttccaggttattcgtgtatggatcaggat
gaaattttttttcacaaaaatgtcattaatattcttcttgaatatcatggaaaatttcct
cacgtatttcaaatgttgatcaatcataaaccaatatacgaattggataatcttttcccg
ggtcctaatttggaacagtgtgaaaaaacaaaatcattgaatagtatacgtgattggtta
gatttgcaagaattttcaaaaattggaacaacacgtggaaatgctaattatcttgacaat
tgtattgtgaaggctatagaggagagaatcgaatctcatatggttttactgtgtgaagag
caaacatttacacaaaaattgcatccatcaagtttttacatacccgaattcattctcaaa
ggaagctatcttcctgatgcaaaagtgaactttgaattatttgatcgagttgtgaatata
aaaacatcaattattgtaccatttggcgctaaaggaactgtgattggtatttattccggt
aatgatcatttgactaagtttaccagatataatgaacaagacgaagaagagagaaaagat
aatgattgtttattgtcttcaactattgaagtcatgtttgatgaaccattcgatggtggt
ttttctgaacgaagttccaaatctaatattttcaaaatgcatgcatcttttttaatcaac
atttcacatggattgcgaatgtcaaaaaagaatatcaattttaagaatgtttatcaaccg
attcaatctgctggacataaacaatcaaactattatcaaaataatgcccgtccctattac
aataataataatcaattacaaacgcaaaaatcaaataacgtaccaaataataatgcgtcg
aaaattcaaataatgcccaggcctgaacagcaattacaacaaaccaatgaatcgccgaac
aaattcaatcattcagaaaattctccgtttaaagctattcctaaaccatcctatgctggc
attgttgttggttcgaatattcaagaacaatttcctcttcaacaacaagcgtttcaacct
tctctgggggctattaaatttcctaatagtctgccattgccaacgacttggtctcctgat
gctttgggtcaaatgttctctggaatcaatattagacatgcgaatcctagtcaggcgaac
aatgcaagcatgaacaagattgagctaccgagaaaatctgaaataccggcaccaccctct
cattggatcaaatcattaggctctaaagccatggaaaatttacaagatccccaactgctc
attccaagttttacggtctcatcaagttcacaagctatgatcaataatgatatcatttca
aacaatgatacgatccagaacccgttgaatgatatgaataaaatctggaaccaacagtct
acgcgttacgataatcataatcgttattttcgtcctgaacaaaatcgaaaatatcacaac
cgaaatcatcattatcataatcgaaataatgaacacaatactcagcttcatcataaccaa
caacaatacacaccaaatcaatcgactcctattaaacaacaatcggaatctaccagattt
gtaccgttggtagttgcacgtaatcatcaacatgaaaatgtattgcgaagacaaaacatt
aatcataatcaatag
DBGET
integrated database retrieval system
