Dermatophagoides farinae (American house dust mite): 124492404
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Entry
124492404 CDS
T08043
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124492404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124492404
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124492404
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124492404
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
BBS2_pf
DUF4325
Motif
Other DBs
NCBI-GeneID:
124492404
NCBI-ProteinID:
XP_046911232
LinkDB
All DBs
Position
Unknown
AA seq
1967 aa
AA seq
DB search
MNFDMEFVKTDNAVMTTAGTTSSSEDATYFIESIRHSGVAPTFIATCLIKLCDSKTNCTE
EMLIKFANNVVENLICESPLTEILRTLDSTEFSKKISMLQQFDFNKFLFVCRYLCSSDKQ
GLDILGITFFSKVWKSNAHFQQQVIRYCIVSDWVQQILNNCKHPSLTKKVPQIENLKCPI
EYETDCQIYCWKYQCLCQILLDLSDINQLTRSFVEEIFFTPLNKCPDLLVFSLIECHGNH
GLKENVLIKALLKFICVSHNNPNPNATLIIQKIWPTDFVYTPKIILTWAQKSLLTAMVEL
YTSSSPEEQSYKLSKILDLSQDLKVLNVLLSSNTYSFVIDLACFASRREYLKLDKWLNDK
ITQNGPQFVDACIQFLKKRCAIFGATEPTTSLPNETYRIILNCLRHHVSDTPKSMIEFEI
IKMYNKFTQWVNQNQFVNSQLPTTMKPSQFDSVGSHLFPENPIRSPQLNATQQPYSPETE
EEFTKDIEEEADSYFQRIYNQDQPDSLTIDQFLDMLKKFQESSHKREKEIAACMIRNLFK
EYPFLPQYPDKELVITGEIFGGIILNNLVKGLTMVNALRCVMDALKRTESSSRYFMFGQA
ALNKLKTRLKEFPQFCNHLCNIPTYRDLPPILIEFIEYARQGTDPPSLTHNRRITLLNSN
NKMNAGNNQASNDAQCQQVEIPPSAFQDKVAFIINNLSQMNLVKKADEFKELFLKEKDQY
FQWFSHYFVMKRVGLESNYHELYATFMVKVSTSDLSVKILSETYRNIKILLRSNKETDNF
QDRTLLKNLGNWLGIITLSQNKPILTINLDLRNLLIEAYHKGQLQMLFVVPFVTKILMGS
AKSKVFRPPCPWTVKLIKILVELHSVSNLKLNLKFEVEVLCKHLELKIEDFMGKSQDLKN
KELFMKLEPQLGASSMPRPNFVPNNIGSVLEPNVAISGMLHSSHSTVDSNSMHPQTAVSN
TVTATTNQVQNYNEINVNNISNLSQSIVIQPNLQIIMLNPQHKNFIRNLIEKCVQEWITF
VSERVIKVCMVTTETLVKKDFVHESNAELMRNAAHKMMRSLVAGYSLINTQEPLLNRIQM
SLLTYFQAKPMMNVTKELIDSTIQRLINDNLELCVCFVQKTCIERAIEELDKRMKPDFEA
RQKITADGNKKSSSISLKQLQIYEEMGRNIAGFSTNQSSFYTPMDNTPAKTANYPSVNVL
SASSHNYPLVHNEHNAMNVQGNQVHVDAFVVIYDKLIKHLSELIQEFEYVHYTTEAMHQV
LEILKVCKQNPRDQATAVSLIKNVINGLRELLLNAETGVTDLAVISRARDFYLILLKALA
DQRAYNLRFTTLNVTRSVLEHWIAMNTTFPDDLFDILNRQELINLNFLDNEFYQILENGS
TSFPMILNFLKYYLGNISANHFPTTLDLLQRIVAMKMNQQSPTNTQLIIELKHILSLARI
NIPNQSNNEMMDGSALETIVKDWIRYYNSKDINNSFPVVVKNMNAQGILKNDESIANFFK
FFLEFCVERCYQIISYAVQHPTFPLNNIHLKCYELIDSYSVLVILFIKQSGNQGNLDQKF
QFLIRILTILTNTAYRDQEIHHKDFFSLTYYRIMLSIFIEFFYSPLNFGFQELIVSNDNL
FEVFKFHLVRNYCNFLHQMCPSKMPSFTFAWLDFISHRIFMGKCLDNSHQINHKTWPIYC
ALLTDLLLFLKPILQNMDSFIVNTNMELYKGTLKLFLILFHDFPEFLCEYCYNLCDIIPI
RAVQLRNIILSANPINIPDVSNLKVDNLYEIIPPVRISSTILCDQLQYFQKELESYLLHR
TPSNFLTDLAQALSANLLNAEKQSSFTTLINALTLYIGISAIQTNKSVTINSIHNSVHLE
IFQHLLMNFDSQGRYILINSMVDHLRYPNNETLLFICLLLTLFKENNEHIREQIVRVLLE
RYITQRPHPWGIEYLINELFRNPNYKLLEHNFIKCVPEIEKYFSRST
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgacatggaattcgtcaaaacggataatgccgttatgacgacggcagggaca
acatcgtcgtctgaagatgccacatactttattgaatcaataagacattcaggtgttgca
ccaacatttatagccacttgtctaatcaaactatgtgattcaaagactaattgtacggaa
gagatgttgatcaaattcgctaacaatgttgtagaaaatttaatatgtgaatcacctctc
actgaaattcttcgaacgttagactcaacagaattctctaaaaaaatatccatgcttcaa
caatttgactttaataaatttcttttcgtttgtcgatatctgtgctcatcggacaaacaa
ggattggacatacttggcataacgtttttttcaaaagtctggaaaagcaatgctcatttt
caacagcaagtcataagatattgtatcgtttcagattgggtgcaacagatattaaacaat
tgcaagcatccttctctgaccaagaaagtgcctcaaatcgaaaatctaaaatgtccaatt
gaatatgagactgactgtcagatttattgttggaaatatcagtgtttatgtcagatattg
ctagatctttctgatatcaatcaattgactcgttcatttgtggaagagatatttttcacg
ccattaaacaaatgtccagatctgctggtattttccttgattgaatgtcacggtaatcat
ggcttaaaagaaaatgtactcatcaaagctttattgaaattcatctgtgtcagtcacaat
aatccgaatccgaatgcaacactaatcatacaaaaaatttggcctactgattttgtctat
actcctaaaatcatattgacatgggctcaaaaatcattgctaacagcaatggttgagctt
tatacatcttcatcacccgaagaacaatcatataagctttcgaaaattcttgatctttct
caagatttaaaagttttaaatgttttactatcaagcaatacgtattcatttgtgattgat
cttgcttgttttgcatcccgacgtgaataccttaagcttgacaaatggctcaacgataaa
attacacagaatggccctcaatttgtagatgcatgtatacaatttctcaaaaaacgatgc
gctatatttggagcaacagaaccgacaacatcacttccaaacgaaacgtatcgaattata
ttgaattgtcttcgacatcatgtttctgatactccaaaatcaatgatagaatttgagata
ataaaaatgtataacaaattcactcaatgggtgaatcaaaaccaattcgtaaactcacag
ctaccgacaactatgaaacctagccagtttgattcagtcggatctcatttgtttccagag
aatcctatccgtagtcctcagctaaacgctactcaacagccttatagtccagaaactgaa
gaagaatttactaaagacattgaggaagaagccgattcttactttcaacgaatctataat
caagatcagccagattcattgactatcgatcaatttcttgacatgttgaaaaaatttcaa
gaatcgtcccataaaagagagaaagaaattgctgcttgtatgatcagaaatcttttcaaa
gaatatccgtttttgccacaatatccagacaaagaacttgtcatcacaggagaaatattc
ggcggtattattttgaataatttggtcaaaggtcttactatggtcaatgcattgcgatgc
gtaatggacgcactcaaacgtacggaatcatcatctcgttattttatgtttggacaagct
gcattgaataagctgaaaactcgtctaaaagaatttccacaattctgcaatcatctttgt
aacatccctacttatcgtgatttgccgcctattttgatcgaattcatcgagtacgctaga
cagggtacagatccgccgtcgctaactcataatcgtcgtattacacttttaaatagcaac
aataaaatgaacgcaggaaacaatcaagcatcaaatgatgctcaatgtcaacaagtcgaa
attccaccaagcgctttccaggacaaagttgcattcattattaataatctatctcaaatg
aatcttgtcaagaaagctgatgaatttaaagaattgtttcttaaagaaaaagatcaatac
tttcaatggttttcgcattattttgtcatgaaacgtgttggcttagaatcaaattatcat
gaattatatgcaacatttatggtcaaagtgagcactagtgatctttcagtgaaaatccta
tctgagacttatcgtaacatcaaaatcctgctccgctcaaacaaagaaactgacaatttt
caggatcgaactttgttgaaaaatcttggcaattggttgggcataattacgttatctcaa
aataagccgattctcacaataaatttagatttgagaaatttgttgattgaagcctatcat
aaaggtcaactacaaatgttatttgtagtaccgtttgtcaccaaaatattgatgggttca
gctaaatccaaagtatttcgtccaccatgtccatggacagtcaagttgatcaaaatttta
gtcgaattgcacagcgtttctaatttgaaattaaatctcaagtttgaagtggaagtttta
tgcaaacatcttgaattgaaaatagaggattttatgggtaaatctcaagatttaaaaaat
aaagaattattcatgaaactggaaccacaacttggagctagctctatgcctcgacctaat
ttcgtcccaaataacattggatcagttttagaaccaaatgttgctatctctggaatgtta
cattcatcacattcaacggttgatagtaattcgatgcatccacaaacagctgtttcaaac
acagtaactgctacaacaaatcaggtgcaaaattataatgaaatcaacgtgaacaatata
tcgaatctttctcagtcgattgttatccaaccgaatttgcagattatcatgttgaaccca
caacataagaattttattcgtaatttaatcgaaaaatgtgtacaagaatggattactttt
gtctcggaacgagtgatcaaagtttgtatggtcaccaccgaaacattggtcaagaaagat
tttgtccatgaatctaatgctgagttaatgcgtaatgcagcccataaaatgatgcgttca
ctagttgcaggatattcattgatcaacactcaagaaccgttgcttaatcgaatacaaatg
tcattgcttacctattttcaggctaaaccaatgatgaacgtgactaaagaattgattgat
tcgaccattcaaagactgataaacgataatttggaattgtgcgtgtgttttgttcagaaa
acatgcatcgaacgagccatcgaagaattagataaacgaatgaaaccagattttgaagca
cgacagaaaatcacagcagatggtaataagaaaagttcatccataagtctaaaacaattg
caaatttatgaagaaatgggacgaaatattgccggttttagtacaaatcaatcatcattc
tatacgccaatggataacacaccagctaaaactgccaattatccgagtgtcaacgttttg
tccgcctcctcacacaactatccgttggtccataatgaacataatgccatgaacgttcag
ggaaatcaagttcatgtagatgcttttgttgttatttatgataaattaatcaaacatctg
agtgaattgattcaagaatttgaatatgtccattacacaacagaagcaatgcatcaggta
ttggaaattctgaaagtttgcaagcaaaatcctcgtgatcaagcaacggctgtcagtttg
atcaagaatgtcattaatggtctcagagaattgttgttgaatgctgaaactggtgtcacc
gatttggctgtcatatcccgtgcacgagatttttacctcatacttttgaaagctcttgcc
gatcaacgagcttataatcttcgtttcacaacattgaatgtaacccgttctgttcttgaa
cattggatagcaatgaataccacgtttccggatgatctttttgacattcttaatcgtcaa
gaattgatcaacctcaattttctcgacaatgaattctatcagatactagaaaatggttcc
accagttttccgatgattttgaatttcctcaaatattatctaggcaacattagtgcaaat
cattttcctacaacattggatttattacaacgaatcgtcgcaatgaaaatgaatcaacag
agtcctaccaatactcagttaatcatagaactaaaacatattctttcattggcacgaatc
aatatacctaatcaatcgaataatgaaatgatggatggttcagctctcgaaacaatcgta
aaggattggatacgatattacaattctaaagatattaacaattctttccctgttgttgtg
aagaatatgaatgcacagggcattctcaaaaacgatgaatcgattgcaaatttttttaaa
ttttttctcgaattctgtgtcgaacgatgctatcaaattatttcatacgctgtgcaacat
ccaacatttccattgaataatatccatcttaaatgctatgaattgattgattcgtattct
gtattggtcatattgttcataaaacaaagtggcaaccaaggaaatttggatcaaaaattt
caatttctaatccgtatcttgaccatattgacaaacacagcttaccgtgatcaggaaatt
catcataaagattttttttcattgacatactaccgaataatgctatcgatttttatcgaa
tttttctattcgccattgaattttggctttcaggaattaattgtcagtaatgacaatcta
ttcgaagttttcaagtttcacctggttcgaaattattgtaattttttgcatcaaatgtgt
ccatcaaaaatgccatcatttacgtttgcatggctagattttatttcacatcgaattttc
atgggaaagtgtttagataacagtcatcaaattaatcacaaaacatggcccatctattgt
gctctattgactgacctcttacttttcttgaagccaatcttgcagaatatggattcattc
atagtaaatacaaacatggaactttacaagggtacattgaaattgtttctaattttgttt
catgattttcctgaatttttatgtgaatattgttataatttgtgtgacatcattcctatt
cgagctgtgcaacttagaaacattattctgagtgctaatccaatcaatatacctgatgtt
tcaaatctcaaagtggacaatctttatgaaattataccacctgttcgaatttcaagcact
attctgtgcgatcagttacaatattttcaaaaagaattggaaagctatctgcttcatcgt
actcccagcaattttctcactgatttagctcaggctttaagcgcaaatctattgaatgcc
gagaagcaatccagtttcactacactgattaatgctttaacgctatatattggcatatcg
gccattcagaccaacaaatcagtgactattaattcaattcataattcggttcatctcgaa
attttccaacacttgttgatgaactttgattctcaaggtcgatatatactaatcaattcg
atggttgatcatctacgttatcccaacaatgaaactcttttatttatatgtctactttta
acattgttcaaagaaaataatgaacatattcgtgaacaaattgttcgagtattacttgaa
cgttacatcactcaacgaccacatccatggggaatcgaatatttgattaatgaattattt
cgtaatcctaattacaaattattggaacataatttcatcaaatgtgttccggagattgaa
aaatatttttcacgatcaacataa
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integrated database retrieval system
