Deinococcus grandis: DEGR_06530
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Entry
DEGR_06530 CDS
T06640
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dga
Deinococcus grandis
Pathway
dga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DEGR_06530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dga03021
]
DEGR_06530 (rpoC)
03400 DNA repair and recombination proteins [BR:
dga03400
]
DEGR_06530 (rpoC)
Enzymes [BR:
dga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DEGR_06530 (rpoC)
Transcription machinery [BR:
dga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DEGR_06530 (rpoC)
DNA repair and recombination proteins [BR:
dga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DEGR_06530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBN93920
LinkDB
All DBs
Position
complement(698527..703146)
Genome browser
AA seq
1539 aa
AA seq
DB search
MKDFNKVRIAIASPEKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPQKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAG
QLEKVLYFSSFLVTDPRNAQKDGRPLKRGELLSDDEYRELRFGRQETYSVPNGTDAEIRD
GEYVTRGQILGGNVVSKMDGLAQYRFPRRAIIAYSEEVEATLPVPAEALVEQDAFRAGEI
LAELESDVTITAPVDGTVVLHEMGEDSVMVELREGVDEEGTPSGEVLSRVYIPHGMNVQV
VHGEIVEAGAALADAASGTRLRVSRDSRLSGVTFPKKKGDVQVKAHWTRRAEYPINPTMH
VLIGDGSEVKKGQKVVGAIDKEEEIVADADGTITLHNPASIIVSKAKVYAYSDEPLVVNG
DRVEPGDELADGGDLRSEISGRIEIDLVRKQVRVIESYDFDAKMGAEAVKELLDDLNLDE
LEVELNEMMKDSSRHKRAKARKRLEVTRAFKRSGNHPSWMILNTVPVMPPDLRPMVQVDG
GRFATSDLNDLYRRLINRNNRLKKLMSQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVT
NPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALEL
FKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLG
IQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSP
ANGEPNVKPSRDIILGIFTLTLLRKDNLGAGSEFADEQAALAALEGGKVALNSPIVVAGQ
ETSPGRLKYIFSNPDEAVMAVERGEIDHQDYVRIRLNGVTYDTSAGRVMFRRIVQEALGT
QAALVDTLVNLETAYEKDHLKDMVMACFKHLGIEATAGLLDGLKDAGFKLSTTSGITIGI
DDIVIPPAKTEILAEADAKVAEIEQNFEFGFMTEEERYKQVVQLWNDTKDEVKNAMFDNF
GKNYPFNPLWIMSLSGARGNAQQITQLAGMRGLMARPDGSTIEVPIRASFREGLSVLEYF
ISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVMPLGATDERTGE
WRTRKSSEIETSIYGRTLSDAVEVDGRTIEAGEMLSLEDVKAITKNAKALQSVFIRTPLN
CRVKSGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGSGGGD
ITMGLPRVIELFEARKPKTSAAVADRDGVVRIEEDEERYLVRIEADDDQYSSKTAMKISK
GLRMIVKDGDRVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKH
IEVIVRQMLRWVEITDGGDTELLEGQTVERWEVDQANDLLEEGQTPSSWKPVLLGITKSS
LTTKSWLSAASFQHTTHVLTEASMKGQVDDLIGLKENVILGKLIPAGTGLQTVRDMQVAD
ERTLEKYGEGSTSTDSVTGNRSYDDTRPGVVNENVTYTN
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttcaacaaagttcgtatcgccatcgccagcccggagaagatccgcgagtgg
tcgttcggcgaggttgaaaagcccgaaaccatcaactaccgcaccctgaaacccgagcgc
gagggtctgttcgacgagcgcatcttcgggccgcagaaggactacgagtgcgcctgcggg
aagtacaagcgtcagcgctacgagggcaaggtctgcgagcgctgcggcgttgaggtcacg
agcagcaaggtgcgccgctaccgcatgggtcacattgacctggcgacgcccgccgcgcac
atctggtacgtgaaggacacccccagcaagatcggcacgctgctcgacctctcggccggt
cagctggagaaggtgctgtacttcagctccttcctggtcaccgacccccgcaacgcccag
aaggacggccgtcccctcaagcgcggcgagctgctgagcgacgacgagtaccgtgaactg
cgcttcggccgtcaggaaacgtactctgtccccaacggtaccgacgccgagatccgtgac
ggcgagtacgtcacgcggggccagatcctgggcgggaacgtcgtcagcaagatggatggc
ctggcgcagtaccgcttcccccgccgcgcgatcatcgcgtacagcgaggaagtcgaggcg
accctgcccgtgcccgccgaggcgctggtcgagcaggacgcgttccgcgccggtgagatc
ctcgccgagctggaaagcgacgtcacgatcaccgcgcccgtggacggcaccgtcgtgctg
cacgagatgggcgaggacagcgtcatggtcgagctgcgcgagggcgtggacgaggaaggc
acccccagcggtgaggtgttgagtcgcgtgtacatcccgcacggcatgaacgtgcaggtc
gtgcacggcgagatcgtcgaggccggcgccgccctggccgacgccgcgagcggcacccgc
ctgcgcgtcagccgcgacagccgcctgagtggcgtcaccttccccaagaagaagggcgac
gtgcaggtcaaggcgcactggacgcgccgcgccgagtaccccatcaaccccaccatgcac
gtcctgatcggggacggcagcgaggtcaagaagggccagaaggtcgtgggcgcgatcgac
aaggaagaggagatcgtcgcggacgccgacggcaccatcaccctgcacaaccccgccagc
atcatcgtcagcaaggcgaaggtctacgcgtacagcgacgagcccctcgtcgtgaacggc
gaccgcgtcgagcccggtgacgagctcgccgacggcggcgacctgcgcagcgagatcagc
ggccgcatcgagatcgacctcgtgcgcaagcaggtgcgcgtcatcgagtcctacgacttc
gacgcgaagatgggcgccgaggccgtcaaggaactcctggacgacctgaacctcgacgag
ctggaagtcgaactgaacgagatgatgaaggactccagccgccacaagcgcgccaaggcc
cgcaagcgcctggaagtgacccgcgcgttcaagcgcagcggcaaccaccccagctggatg
atcctgaacaccgtgcccgtcatgcccccggacctgcgtccgatggtgcaggtggacggc
ggccgcttcgcgacctcggacctgaacgacctgtaccgccgcctgatcaaccgcaacaac
cgcctgaagaagctcatgagccagggcgcgccggacatgatcatccgcaacgagaagcgc
atgcttcaggaagcggtggacgccctgatcgacaacggccgccgcggcagccccgtcacg
aaccccggttccgaccggtccttgcgttccctgaccgacctgctcggcgggaaacagggt
cgcttccgtcagaacctgctgggtaagcgcgtggactactccggccgcagcgtgatcgtg
gtcggcccgcagctcaagctgcaccagtgcggtgtgcccaagcgcatggcgctcgaactc
ttcaagccgttcctgttcaaggtgctcgaagagaagggtgaggtcacgaacatcaagcag
gcccgcaagatgctcgaacgctaccgcgatacccgcgacagcgtctgggacgccctggaa
gaggtcatcgaggacaaggtcgtgctgctcaaccgcgcgcccaccctgcaccgactgggc
atccaggccttcgagcccgtgctggtggaaggtcagtccatccagctgcacccgctggtc
tgtgaagccttcaacgccgacttcgacggcgaccagatggccatccacgtgccgctcagc
gcccaggcgcaggccgaggcgcgcatccagatgctcagcgcgcacaacctgctgtccccc
gcgaacggcgaacccaacgtcaagcccagccgcgacatcatcctggggatcttcaccctg
accctgctgcgcaaggacaacctcggcgcgggcagcgagttcgccgacgagcaggccgcc
ctggccgccctcgaaggcgggaaggtcgcgctgaacagccccatcgtcgtcgccggtcag
gaaaccagccccgggcgcctgaagtacatcttcagcaaccccgacgaggccgtcatggcc
gtcgaacgcggcgagatcgaccaccaggactacgtccgcatccgcctcaacggcgtcacc
tacgacaccagcgcgggccgcgtgatgttccgccggatcgtgcaggaggcgctgggcacc
caggccgccctggtcgacaccctcgtgaacctcgagaccgcctacgagaaggaccacctc
aaggacatggtcatggcgtgcttcaagcacctcgggatcgaggcgaccgccgggctgctc
gacggcctgaaggacgcgggcttcaagctctccacgacctccggcatcaccatcggcatc
gacgacatcgtcatcccccccgccaagaccgagatcctggccgaggcggacgccaaggtc
gccgagatcgagcagaacttcgagttcggcttcatgaccgaagaagagcgctacaagcag
gtcgtgcagctctggaacgacacgaaggacgaagtcaagaacgccatgttcgacaacttc
ggcaagaactaccccttcaaccccctgtggatcatgagcctgtcgggtgcccgtggtaac
gcgcagcagatcacgcagctcgccgggatgcgcggcctgatggcccgccccgacggcagc
accatcgaagtgccgatccgcgccagcttccgcgagggtctgtcggtgctggagtacttc
atctcgacccacggcgcccgtaagggtggtgcggacaccgcgctgcgtaccgccgactcc
ggctacctgacccgcaaactggtcgacgtggcccacgaagtcgtcgtgcgcgacgtggac
tgcggcaccaccgactacaccgtcatgcccctgggcgcgaccgacgagcggaccggcgag
tggcgcacccgcaagagcagcgagatcgagaccagcatctacggccgcaccctgtccgac
gccgtggaagtggacggccgtaccatcgaagcgggcgagatgctcagcctggaagacgtc
aaggcgatcaccaagaacgccaaggccctccagagcgtgttcatccgcacccccctgaac
tgccgcgtcaagagcggcgtgtgccagaagtgctacggctacgacctctcgcaggccaaa
cccgtcagcatgggcgaagcggtcggcgtcgtcgccgccgaatccatcggcgagcccggc
acgcagctcaccatgcgcaccttccacaccggtggggtcgccggcagcggcggcggggac
atcaccatgggtctgccccgcgtgatcgaactgttcgaagcccgcaagcccaagacctcg
gcagccgtggccgaccgtgacggcgtcgtgcgcatcgaggaagacgaggaacgctacctc
gtgcgcatcgaggccgacgacgaccagtacagcagcaagaccgccatgaagatcagcaag
ggcctgcgcatgatcgtcaaggacggcgaccgcgtcgaagccggtcagcccctcacgcgc
ggcgccatcaacccccacgacctcctgctgtacaaggacaccgacgccgcccagcgctac
ctggtggaagaagtgcagcgcgtgtaccgcagccagggcgtgaaggtgcacgacaagcac
atcgaagtcatcgtgcgccagatgctccgctgggtcgagatcaccgacggcggcgacacc
gaactgctcgaagggcagaccgtggaacgctgggaagtcgaccaggccaacgacctgctc
gaggaaggccagacccccagctcctggaagcccgtcctgctgggcatcaccaagagcagc
ctgaccaccaagagctggctgtccgccgcgagcttccagcacaccacccacgtgctgacc
gaagccagcatgaagggccaggtcgacgacctgatcggcctgaaggagaacgtcatcctc
gggaagctgattcccgccgggacgggcctccagacggtgcgggacatgcaggtcgccgac
gagcgcaccctcgagaagtacggcgagggcagcaccagcacggactccgtgaccggcaac
cgcagctacgacgacacccgccccggcgtcgtcaacgagaacgtcacctacacgaactaa
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