Desulfoscipio gibsoniae: Desgi_1818
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Entry
Desgi_1818 CDS
T02657
Name
(GenBank) DNA polymerase LigD-like ligase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desgi_1818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgi03400
]
Desgi_1818
Enzymes [BR:
dgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desgi_1818
DNA repair and recombination proteins [BR:
dgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desgi_1818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AGL01266
UniProt:
R4KNQ9
LinkDB
All DBs
Position
1855994..1856962
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AA seq
322 aa
AA seq
DB search
MNSVVNSVLPLVKPMLAVPAQPFDDPDYFFEIKWDGYRCLAYLDGQTNLVSRNLKNITGT
FPDLGGLCHCVNDKPMVLDGEIIVLDGGKPSFDALQSRAKLVDKHRVGRAANNLPAIYVA
FDILYRRGKSMMQFSLSERRDCLQAIAKTDNNFIISEPVRGGGVAFYQACVDRGLEGAVA
KKIDSKYRPGTRSVYWKKLRHTRVADFVICGYRQGRGGRMLGSLVLAAWNGTSFIYQGMV
GSGLSWDEEVFLLKKLVHLGTPNPPFKGNPVPVRDVQWLRPRLVCQVEYLTLTRGGILRH
PVYKGLRADKAPEECAPAGQQN
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagttgttaatagcgttcttccactggtaaaaccaatgctggcggtccccgcc
caaccctttgatgatcccgattacttttttgaaatcaaatgggatggttatcgctgcctg
gcctatttggatggtcaaaccaatctggtttctagaaatcttaagaatattaccggtacc
tttccggacctgggtggtttatgccactgcgtaaatgataaaccaatggtgctggatggt
gaaattattgtattagatggcggtaaaccatcctttgacgctttgcagtcccgggccaag
ctggtggacaaacaccgggtcgggcgagcggccaataacctgcccgctatttatgtagct
tttgatattttatatcgccggggtaaatcaatgatgcagttttctttaagcgaacgccga
gattgtctgcaagccattgctaagacagataataattttataatttccgagccggtgcgt
gggggaggcgttgcattttaccaggcctgtgttgatagggggctggaaggggccgttgcc
aaaaagattgacagcaagtacagacccggtactcgctcggtatactggaaaaaactgcga
catacccgtgtggctgattttgttatctgtggataccggcaagggcggggtggtagaatg
ctgggttcactggtgctagccgcctggaacggaacaagttttatttaccagggtatggtg
ggcagcggtctcagctgggatgaagaggtttttttgctaaaaaaactagtccatcttggc
acgcccaatcctccttttaaaggcaacccggtaccggtgcgggatgtacagtggctacgg
ccccggctagtctgtcaggtggagtatttaactctcacccgggggggcattttgcggcat
ccggtatataaaggtctgcgtgcggataaggcacccgaggaatgcgcgccggccgggcaa
caaaattaa
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