Dendronephthya gigantea (soft corals): 114516932
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Entry
114516932 CDS
T06112
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114516932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114516932
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114516932
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114516932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
ThermoDBP-RP_arch
Motif
Other DBs
NCBI-GeneID:
114516932
NCBI-ProteinID:
XP_028392350
LinkDB
All DBs
Position
Unknown
AA seq
2400 aa
AA seq
DB search
MAIRFVDATYLALSQISFLVTDLSKKNYKSSMAEIQNLVEQHGAEAERHYFRSLFSSIDF
SAEGKGAGKDFHQVQLLSQECQSLICKTNFVSIVCYAIENQEQHQKSLKPSSHLLPQISK
VLKFSRVQEVVFGLGLMKSSNEELRNFAGTFVKQKLPDLLRSYIDSDVGGGYEGGLTDVA
IEVLHLLLTYLLYTPQKDVGIGEDQKQAFLNTLRKDFPSERVPVVLAPLLYQGVHDMPLS
RFNVESSPVPKLMMEDDLSKLMHEIGYSCCASLQECKEVLGQFSKANITPMCVARVLGMM
ARTVSGLGESSPLQTSVNIVTPVELGKPEEQSTGPNTWNVEIFIQTIKEVVPELSWTEVI
SCLDHPGFLISTVEALRLIVTACSKGLQDVFPIEILYRAWTNTEGQLSWIQQALINPDVF
CFADYPCHTVVIDILKSPPEDNNREILTWQSLSLVETLLRLAESGHYETVKALFDFPIKH
CPDVLLLALLQTNPTWQTLKYDLASILIPLFLANHPNSLCVLHHVWHGQGQSSPSIRHLV
IQAMADWYVSGDLSRILDVAQDLKALSILLNGSSFAFVIDLAALASRREYLKLDKWLNDK
LREHQEEFAVAVVDFLKRRCPHLAGVIPEKELPKSAQLPPETVNTMLSCLQAYSGHVSLE
LGEEIKQMISRHGPILKSRQPSVSVAMPSLSRQTSRDPGLPGAMDSLAGLNLSSGTIPPT
PTTPSQLPTFPPHPLSTGGGLGALGLGSAIGQPPSKPISQLGTGLTSSSLSNTGGNPLLQ
QLQVEFSNDNFHSLGVTSAAGNFTSTKPLGSLPTFPAQPAQPAGQQQLAGNQRLQAEKLR
QTTTGSDITAVLPGVNQSFPSDVEAEANSYFQKIYNQPPNPTMTIDEVLEMLRKFKDSAS
KKEKDVFLCMLRNLFEEYGHFHNYPNRELHTTACLFGGIIDQGLVTYMALGIALRYVLDA
LRKPFQSKMYLFGITALDRFRLRLKDYQHYCRHLASIPHFNEFPPHLIEFIEYGKQSIQP
PLSSRSVQDTSTTNYFGKVTSTVSDTLPSAVGTTVTTTAPSTGADAAKQFSLSSGVPANG
STTRKEPSIANASNIDTLLGATEKSELAQPSESIQDKIHFIFNNISTNNLTQKGEELKEA
VKTEFFPWLAQYLVMKRVSIEPNFHDLYIKFMETLKWKELFQLVLQETYRNIKVLLQSDK
VPANFSDRSLLKNLGHWLGLMTLAQNKPVLMRNLDVKSLIIEAYFKGQQEMLYVVPFVAK
IMEGCAKSRIFKPPNPWVMAVMGVLVELHQVPDLKLNLKFEVEVLCHALGIDMKEEITPT
TLLKDPEKLNQIIHQLSSPDKDRPTGPSVLSQAPPTTPPPPQYSYQEINVTSLAGLASLI
KINPQIALFQQQPQLRQYVRPAIDRAVQELIHPVVERSIKICLTTAEMIVKKDFALDPDE
SRMRTAAYSMVRFMTAGMALITCREPLNLSINNNLRSTLMAALRGATPQQKEAVESAAQI
VSEENTELACTFIQKTAVEKALPEMDKRLASEFELRRHARSEGRRYCDPVVLTYQAERMP
EQIRLKVGGVTPNQTAVFEEFGKTIPGFTTPTPGENLTTPAAFANNRSIFEQNLHATEPT
ILPEEVAQILGKCTADIEQHLHAMNLSQTSPHGLAIVGLLDVLVTARASRDSVALTRVVH
KAVKGLLEGLNPIPSDTELALRYRDCHMVVLRSLQDVRACGPHWTGKHVTKFVCECPPDV
KFNVDIIDILIRNRLINMREFDVHLAQCIENDLNVSAIHFAVQLTKLYLIDEHSNHVSQG
DLYQTLEALSRIANSRSGIGDALPSILEVIRSGGMSSGIDFPPRLNDLDKGSSGQAGLSL
GLSGLRVFEDPPGLHDKVEYLLHEWVRLYHQPAAGKESEKAFSTFVAMLHQHGILKTDDL
ITRFFRISTELCVENTYRALIEHASNRSHARAKCFSTLDAYCRLIALLVRHSGDASNSVT
KINLLTRVLGTVVQVLLQDHEMRKTDFHQLAYHRIFIILLLELNQPEQVLEAINYQVLQT
FSTIFHALRPSRAPGFAYAWLELISHRMFMSKLLLNTPQQKGWVLFQQLLIDLFKFLAPF
LRNAELNKPTHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAFPR
NMRLPDPFTPNLKVDLLTDIAHSPRILTNFSTAIQPSTFKKELDSYLKTRAPVTFLTELR
SHLQVATEPGTRYNVPLMNALVLYVGTQAIAYIHSKSGTPSMSTITHSSHMDIFQNLAVD
LDTEGRYLFLNAVANQLRYPNSHTHYFSCVLLYLFAEANTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNHQYKFWTHDFVHCAPEIEKLFESVARSCMQQKQPQTREGGAPESA
NT seq
7203 nt
NT seq
+upstream
nt +downstream
nt
atggcgataagatttgtggatgcaacctatttggcattgtcccagatcagctttcttgtg
acagatctttccaaaaagaattacaaatcaagcatggcagaaatacagaatttagtcgaa
cagcatggtgcagaggctgaacgacattactttcgttccttgttttcatcaattgatttc
tctgctgaaggaaaaggggctggaaaagattttcaccaggtacaattgctaagtcaggaa
tgtcagtcattgatatgcaaaacaaattttgtttcaattgtgtgttatgcaattgagaac
caggaacaacatcaaaagtcattgaagccatctagccatcttttgccacaaataagcaaa
gttttgaagttcagtcgggttcaagaggttgtgtttggactgggattgatgaaatcatca
aacgaagagctgagaaacttcgctggtacatttgtgaaacaaaaactcccagatctactg
cgttcatacattgactctgatgttggaggtggatatgaaggtggtctgactgatgttgca
atagaagttcttcatctcctattgacctacctgttgtacacccctcagaaagatgttggt
attggagaggaccaaaaacaagcatttttgaatacactgagaaaagattttcccagtgag
cgggtaccagtcgtcctggctccattgctttatcagggagtgcatgacatgccgttgagt
aggtttaatgtggagagctctcccgtccctaaattaatgatggaagatgatttgagtaaa
ttgatgcacgagattggttattcgtgctgtgcaagccttcaagaatgcaaggaggttttg
gggcagtttagcaaggctaatatcacgccgatgtgtgttgcaagagtgctaggaatgatg
gcccggacagtctctggtcttggcgagtcctctccactacagacatcggtcaacatcgtc
actccagttgaactgggtaaacctgaagagcaatcaacaggaccaaacacttggaatgtc
gagatatttattcaaactataaaggaagtggtgccagagctaagctggactgaggttata
tcatgtttggatcacccgggattcttgatcagcacggtggaagcactgagacttattgtg
accgcttgtagcaagggtttgcaggacgtatttccaatcgagatactctaccgagcttgg
actaacacagaaggccagttatcttggatacaacaagctctgatcaatcccgatgtattc
tgctttgcggactacccatgtcatactgttgtgatcgatatactcaaatcacctccggag
gacaataatcgtgaaatattaacatggcaatccctgagtcttgtggagacattgcttcgc
ttggctgagtctggtcattacgagaccgtgaaagccttgtttgattttccaataaaacat
tgtcctgatgttctcctgctggctttgttgcagaccaacccaacgtggcagacactgaag
tacgaccttgcatcaatattgattccattgttcctcgcaaaccacccgaattccctttgt
gtactgcatcatgtttggcacggtcagggtcagtcgtcgccatccattcgtcatctcgtc
attcaagcgatggctgactggtatgtcagcggtgatttatctcgaatactggatgttgct
caggacctaaaggctctttccatattattaaacggttcgtcgtttgcattcgtcatcgac
ctggcggcgttggcatcgcgacgtgagtatctgaaactggacaaatggctgaacgataaa
ctccgtgaacatcaagaagaattcgcagttgccgttgtcgactttctcaaacgtcgctgt
ccccacttggcaggtgttataccagaaaaggagctgccaaagagtgcacagttgccacca
gagaccgtgaacacgatgctctcctgtctacaggcttattcaggtcatgtgtcgcttgaa
cttggtgaagagataaagcagatgatttcacgtcatggaccaattctcaagtccagacaa
ccatcggtcagcgtcgcgatgccctcgttgtcacgacagacgagcagagaccctggcctg
cctggagcgatggattcactggcaggcctcaatttatcatctggcaccattcccccaaca
ccgaccacgccctcccaacttccaaccttcccaccccacccgctgtcaactggtggagga
ctgggcgcgctcggtctaggctcggcgattggacagccaccctcaaaaccgatatcccaa
cttggtacaggtctaacgtcttccagcttgtcgaacactggaggaaaccctttgcttcag
cagttgcaagtcgaattctccaacgacaatttccattcacttggcgtgacaagtgctgca
ggaaatttcacctccacaaaaccgctcggatcgttgcccacattccctgctcagcctgca
cagcccgcaggacagcaacagcttgcaggcaatcagaggttacaagctgaaaaactccgt
caaacgacaactggcagcgatatcacggcggtattgcctggggttaaccaatcctttcca
agcgatgtcgaggcagaagcgaactcgtatttccagaaaatatacaaccaaccgcctaat
ccgacaatgacaatcgatgaagtccttgaaatgttgagaaagttcaaagattcggcatcg
aaaaaagagaaggacgtgttcttgtgtatgctacgaaatctctttgaggagtacggtcat
tttcacaactatcctaacagagagttgcatacaacggcttgtctcttcggtgggattatt
gatcaaggacttgttacgtacatggcgttgggcattgctctgcgatacgtactcgacgca
cttcgtaaaccatttcaaagcaagatgtatttatttggaatcacagctttggatcgcttt
agattaaggttgaaagattaccaacattactgtcgacatctggcatcaatacctcacttc
aacgagtttcctccgcatcttatcgagtttattgaatacgggaagcaatcgatccagcct
cctcttagcagcaggagtgtgcaggatacatcgacaacgaactatttcggcaaggttacc
tcgactgtatcggacactttgccatcagcagttggaacaaccgtaacgactacagcaccg
tcaactggggccgatgctgcaaaacagttttcactttcgtctggagtgcccgcaaacggt
tcaacaacgcgaaaagagccctcaatagcaaacgccagcaatatcgatactcttcttgga
gctaccgagaagtcagagctggctcagccgtcggaatcgattcaggataaaatccatttc
atctttaataatatctcaacaaataatctcacacaaaagggcgaggaattgaaagaagct
gtgaagaccgaattcttcccatggctggctcaatatttagtcatgaagagagtcagtatt
gagccaaacttccacgatctttacatcaagttcatggagaccctgaagtggaaagaactc
tttcaattggtgcttcaggaaacctatcgaaacataaaggttttacttcaatccgacaaa
gtacccgcaaacttctcagacaggtctttgttgaaaaatcttggccattggcttggtctg
atgactttggctcaaaataagcccgtgttgatgagaaatctggatgtaaagtcgcttatt
attgaagcgtatttcaaaggacaacaggaaatgttgtatgttgtgccatttgttgcaaaa
ataatggaaggttgtgccaagagcagaatattcaagcctccaaatccctgggtcatggca
gtcatgggtgttttagtcgaattacaccaagtacctgatctcaagcttaatcttaagttt
gaagttgaagttctatgccatgccttgggaattgacatgaaggaagaaatcactccgaca
acgttattgaaagatcctgagaaattgaaccaaatcatacatcagttgtcgtcgccggac
aaggacaggccgacaggaccgtctgttctttcccaggctcctccaacaactcctcctcct
ccccagtactcttaccaagaaatcaatgtcacgtctttggccggacttgccagcctcatc
aagataaacccacagatagcgttgttccaacaacagcctcaactccgtcagtacgtacga
ccagcgattgatcgcgctgtgcaggaactcattcatccagttgttgagagatccatcaaa
atttgcttgaccactgcagaaatgatcgtcaaaaaggacttcgctttggacccggatgag
tcgcgaatgaggacagccgcgtatagtatggtgcgctttatgactgctgggatggccttg
atcacgtgtcgtgaaccgttgaaccttagtattaataataatttgaggtcaactttgatg
gctgctttgaggggcgccactcctcagcaaaaagaagcagtcgaaagcgccgctcagatt
gtcagcgaggagaacaccgagcttgcttgtacgtttatacaaaagacagcggtggagaaa
gctttgcctgaaatggacaaacgtcttgcttccgaatttgaattacggcgtcatgctcgc
agcgaaggaagacgctattgtgatcctgtcgtcctaacctaccaggctgaacgaatgcct
gaacaaatacggttgaaggtcggcggtgtgacgccgaaccaaacagcagtatttgaagag
ttcgggaaaacaattcctggttttacaacacctactcctggtgagaatctgacgacaccg
gcagcgtttgccaacaacagatctatttttgaacaaaatcttcatgcaactgagccaacg
atattaccggaagaagtggcccaaattcttggtaaatgcactgccgacattgaacagcat
ctacatgcaatgaatttatctcagacgagtcctcatggcttggcaattgttggtttactc
gacgtcctggtcactgcaagagcatctagggatagtgtcgctctcacccgagttgtccat
aaggcggtaaaaggcttactggaaggtttaaatccaatccccagcgatactgaactggct
ctgagatacagagattgccacatggttgttttgcgaagtctgcaagatgttcgcgcttgt
ggtcctcattggactggaaaacatgttacaaaatttgtatgcgaatgtccaccggatgta
aagtttaacgttgacatcatcgatattctcattcgaaatcgcctgatcaatatgagagaa
tttgatgtacatttagcacaatgtattgaaaacgacctgaacgtgtcggccatccatttt
gcggtacagttgacgaaactttatctgattgacgaacacagtaatcacgtttcccaaggc
gacttgtatcagacgttggaggctctatcacgaatagcaaattcgagaagtggcattggc
gatgcgcttccctcgatcctcgaggttatacgtagcggaggtatgagcagtggcatcgat
ttccctccaagattaaacgatttagacaaaggatcaagcggtcaagctggattatcctta
ggattaagcggattaagagtattcgaagatcctcctggtcttcatgacaaggtggaatac
ctccttcatgaatgggttcgtctgtatcaccaaccagccgcgggaaaagaaagcgaaaaa
gcgttctcaactttcgtagcaatgcttcaccaacatggcatattgaaaacagatgatctt
ataacccgattctttcgcatcagcacagaactttgtgtggaaaatacttatcgtgcactc
attgaacacgcctccaacaggagccatgcccgcgcgaaatgtttcagtactttggatgcg
tactgtcgtttgatagctctgcttgttcgacactccggtgacgccagtaacagtgtgacc
aagattaatctacttactagggtgcttggaactgtcgtccaggtcctacttcaagatcac
gaaatgcgaaagacagattttcatcaactcgcttatcataggatctttataatcctgttg
ttggaattgaaccaaccagaacaagttcttgaagctatcaactatcaggtcttgcaaaca
tttagtacaatattccatgctcttcgtccgtcacgtgcgccgggattcgcgtatgcttgg
cttgaattgatctcgcatcgaatgtttatgtccaagttgttgttgaacacaccgcaacag
aagggctgggtgttgtttcagcaattgttgatagatttgttcaaatttctcgctccgttc
ttgagaaatgcggagttgaacaaacccacgcatcttctttacaagggaactctcagagtg
ttactggtcctccttcacgatttcccagaatttctgtgcgactatcatttcagcttctgt
gacgtcatcccacctaattgcattcaaatgagaaacctcatacttagcgcatttcctaga
aatatgagattacccgatcccttcacgccaaatctcaaggttgacctgctcactgatatt
gctcactctccacggattttaacgaatttttcaacggcaattcaaccctcaacttttaaa
aaggaattagattcttatctgaaaacgagagctccagtgacattcctgaccgaactgaga
tcacacctacaagttgccacagagcctggtacccgatacaatgttcccttaatgaacgct
ctagttctttacgttggcactcaggctattgcttatattcacagtaagagtggaacacct
tccatgtcgactatcacgcattcatctcacatggacatcttccaaaaccttgctgtcgat
ttagatactgaaggtcgttatctatttttgaacgcagtcgccaaccaattgcgatatccc
aacagccacactcactattttagttgtgttttactttatctttttgctgaggcgaatacg
gaagccatccaggaacaaatcacgagggtgctgctggaaagacttattgtaaacagacct
catccttggggattgctgattacattcattgagctcatcaaaaatcatcaatacaagttc
tggacgcacgattttgtccactgtgcaccagagatagaaaaattgtttgagtcagttgca
cgaagctgtatgcaacagaaacagccacaaacacgggaaggcggagctcctgaaagcgct
taa
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