Dendronephthya gigantea (soft corals): 114518166
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Entry
114518166 CDS
T06112
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03008
Ribosome biogenesis in eukaryotes
dgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114518166
09123 Folding, sorting and degradation
03018 RNA degradation
114518166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114518166
03009 Ribosome biogenesis [BR:
dgt03009
]
114518166
03016 Transfer RNA biogenesis [BR:
dgt03016
]
114518166
03036 Chromosome and associated proteins [BR:
dgt03036
]
114518166
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114518166
mRNA degradation factors
5'-3' decay
5' exonucleases
114518166
Ribosome biogenesis [BR:
dgt03009
]
Eukaryotic type
Pre-60S particles
RNases
114518166
Transfer RNA biogenesis [BR:
dgt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
114518166
Chromosome and associated proteins [BR:
dgt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114518166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
MSSS
HTH_50
Motif
Other DBs
NCBI-GeneID:
114518166
NCBI-ProteinID:
XP_028393911
LinkDB
All DBs
Position
Unknown
AA seq
1757 aa
AA seq
DB search
MGVPKFYRWLSERYPCLSQVVKDYQIPEFDNLYLDMNGIIHPCSHPNDDDPHFRITEEQI
FSNIFHYIEVLFRIIKPQKVFFMAVDGVAPRAKMNQQRSRRFRSAREAEENIKKAKEKGQ
TLPTEERFDSNCITPGTEFMVRLHEQLKYFVNKKISTDPGWQGLKIYLSGHETPGEGEHK
IMDFIRYERSQPGYDPNTRHCLYGLDADLIMLGLTSHDPHFSLLREEIKFGKNVKRINNP
EDMTFHLLHLSLLREYIDWEFQCLKEKISFGYDLEKIIDDWILMGFLVGNDFIPNLPNLH
INHDALPYLWQIYKDIMPSLDGYLHDGGTLSLQRFKNYITTLAKFDLETFEDKYVDLKWL
EGKTAQTDEQELLSEQSDVDGNVASTSSALSDMSLETGEKKKGKLLDYLEEKGELDDEED
DGDFTEEHEKYKLKYYREKFQRKDDDNCEELVKQLSFKYIEAIQWILHYYFNGVPSWGWF
YPFHYAPYVSDVKDFQDHPLSFDIGKPFLPFEQLLAVLPAASKTLLPEPFHSLMIMDNSP
IIEYYPPKFETDLNGKRQDWEAVVLIPFIDEERLLEAMEPLYPRLKKSEKDRNKHSSCLL
YTHEPEKSQCYPSSLPGVFPDLECCRANCETIPIDKYRLPRSEIVKGILPDVKLDVYFPG
FPTLKHVSHSGELRKIGVKVFQMHSRGESMVLKIDETDELNLKEIADSLLGKPCYVGWPH
LIEAFVTKVSDDSKKXNLXKKAINLSLYXFSKXYLQEVTLTESDSSAWRKQVSCEKQMHI
ERKGVDIGMTHILVEACQIQGKKYVCGAKGDVCLEKKWSDWAVAYPLQVTVKDINVYDET
DAGTQCATVADLYPVETECFMMAIPHYGSSGKVIEVDSKTNRVRVQLTVIPEPDLVSLIV
NKDDYVENYIPARIMAKRLGITSQALAQITGKVFLSISERENSSKVDIGLNLKFSKQDKE
VLGYARRHDSGWSYSPKTEKTISEYQEKFPQVFDVLSKHSSDTLKVSDVFPDNEKSKTLS
EVEKWLKTLPSHKQKAVSCGSSTLDEPIVKQIEEAIEKLKEEKPTRKNVKVRVKPSVLFR
PMKELGQVPPDPAADFELFDRVVNVRTLGVAPYGLKGTIVGIHKGKAENEPVNYEILFDE
PFMGGHSLRGSSAFENKLYVMPAWSLLNLSYGTRLEYKKKGIPSPLVQARQKRQHGSGHH
SKGVPAEYKPSNRGGSYHRDFYSAWQTPPTNNDRQHTTPNERTPNSKERAPKGNERAPKG
NERAPKGNERHSSSRPRFASPEFNSSVNRSRFSPRWNSPRNNLGNNPQNPQVSSQNSRGF
QKQSQPSHGFVVDSSAAVDPKDQLSAQESERVIRQLLNLNGSQGTQSTPSSSQVVFNMPD
NAFMTPSLSPVSPFSPSSNPSGLLVSACRQNRWPDPTFNHQRIAQHVISTVCVAGKLFSG
LPSPTIEDAVKSAAHFALVSLFPHLSSPFVFPPSPNIPPSTTTHQLQHTSVNQHHHERTS
SKPTQGSENRKSEKPTNPSSGQNLFIPLQVSLKRKDAVSTTPNKTSEGNETMEQKTSADQ
NLTNIQEPMNIEQDSTQDPAKTKNQENAQDQGDKTQDPDKTKDPDNAQDPGHKTQDPGKT
KDPDNAQDPGDKTQDPDKTKDPDNAQDPGDKTQDPDKTKDPDNAQDKGNTTQDPGKTKDP
DNAQNPGHTKDLENTKDSDKTRDPAETHEETNTLTDIDVTRRPNQSESHVNEPRTTKAGA
NKEKPKLLAPSFFKGKE
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccgaaattttacagatggctcagtgaaaggtacccttgtttgagccaagtt
gtgaaggactatcagattcctgaatttgataatctgtacctggatatgaatggcataatt
catccctgctctcatccaaatgacgatgatccacattttagaatcactgaagaacaaata
ttctcgaatatctttcactacattgaggtattatttcgaattatcaagcctcaaaaagtg
tttttcatggcagttgacggggttgcgccccgagctaaaatgaatcaacaaagaagccgg
cgatttaggtctgcccgggaggctgaagaaaacataaagaaagctaaggaaaagggacaa
actttgccaactgaagaacgttttgactcaaactgtatcacgcctggcacagagtttatg
gttaggctacatgaacaacttaaatattttgtgaacaaaaaaataagcactgatcctggt
tggcaaggtttgaagatatatctttctggtcatgagacacctggagaaggtgaacataaa
ataatggacttcattagatatgaaagatcacagccaggttatgacccaaacacaaggcat
tgtttgtacggacttgatgctgatttgataatgcttggcttaaccagtcatgatccacat
ttttcacttctacgggaagaaattaaatttggcaaaaatgtaaaaagaataaataaccct
gaagatatgacttttcatcttctacacctgtctctgttgcgagaatatattgattgggaa
tttcaatgtttaaaggagaaaatttcttttggttatgatctggagaagatcattgatgac
tggattctgatgggttttcttgttgggaatgatttcatacctaacctccctaacttacat
ataaatcatgatgctttgccatatctttggcagatatataaggatattatgccatctctt
gatggataccttcatgatggtgggacactcagtttgcagcgttttaaaaattatattacc
acccttgcaaagtttgatcttgaaacatttgaggataaatatgtagacttaaaatggtta
gaaggaaaaacagcacaaacagatgaacaggagctgttatcagaacagtcagatgtggat
ggcaatgtagcatcaacatcaagtgcattatcagatatgtcattagaaactggcgaaaag
aagaaaggaaaattgctagattatcttgaagagaaaggagagttagatgatgaagaggat
gacggagatttcacagaagaacatgagaaatataaattaaaatattacagagaaaagttt
caacgtaaagatgatgataactgtgaagaacttgttaaacagttaagcttcaagtatatt
gaagccatccagtggattttacattactacttcaatggggttccatcatggggatggttc
tatccctttcattatgcaccgtatgtatcagatgtgaaagactttcaagatcacccactc
tcctttgacattggcaaaccattcctaccatttgagcaactccttgctgtcctccctgct
gctagcaagacacttcttccagaaccatttcatagtctaatgatcatggataattctcct
atcattgaatattatccacctaaatttgaaactgatctaaatgggaaaaggcaggattgg
gaggctgtagtgttaataccatttatcgatgaggaaaggttattggaagcaatggaacct
ttgtatcctcgactaaaaaagagtgaaaaagatcgcaataaacacagttcgtgtttactt
tatactcatgaacctgaaaaatctcaatgttatccatcttctcttcctggtgtttttcct
gacttggaatgttgtcgtgcaaattgtgaaactattccaattgataaatatcgactgcca
agaagtgaaatagtgaaaggtatcttgccggatgtcaaactggatgtgtattttcctgga
tttcccaccttgaaacatgtttcacattcaggtgaactaagaaaaattggtgtgaaagtt
ttccaaatgcacagtcgaggtgaaagtatggttctaaagattgatgaaacagatgaactt
aatttaaaagagattgcagattcattgttaggcaagccatgttatgttggttggcctcat
ctgattgaagcttttgtaactaaagttagtgatgatagtaaaaagtaaaatctttaaaaa
aaagctattaacttgagcttatattgattttcaaagtaatatcttcaagaggtaacatta
actgaaagtgattcatctgcttggagaaagcaagtttcttgtgagaagcaaatgcatatt
gaaaggaaaggggttgacattggtatgactcacattttagttgaggcttgtcaaatacag
ggaaagaaatatgtttgtggtgccaaaggagatgtttgtttagagaagaaatggtctgac
tgggcagtggcttatcctcttcaagtgacagtcaaggatatcaacgtttatgatgagact
gatgcagggactcaatgtgctacagttgctgatctatatccagttgaaacagagtgcttt
atgatggcaattccacattatggatcatctggaaaggttattgaggttgattcaaagact
aaccgtgttagagtgcaactgacggtgatcccagaaccagaccttgtgtcgctgattgtt
aataaagatgattatgttgaaaactacatacctgctcgcatcatggccaagcgcctggga
atcacgtcgcaggctcttgctcagatcactggaaaagtatttctttccattagcgagaga
gaaaattccagcaaagttgatatcggattgaatttgaaattttccaagcaagataaggag
gttttgggatacgctcggagacatgacagtggctggagttattcacctaaaacagagaaa
acaatttccgaatatcaagaaaaattcccgcaagtcttcgatgttctttcaaagcattcg
tcggacacacttaaagtatcagacgtgtttcctgataacgaaaagtctaaaactctctct
gaagtagaaaaatggttaaaaacgctccccagtcataaacagaaagctgtaagttgtgga
agctctactctagacgaaccaattgtgaaacaaatcgaggaagcgatcgaaaaactaaag
gaggaaaaaccgactaggaaaaatgtaaaagttcgagtaaaaccttctgttttgtttcgg
ccgatgaaagagttgggacaagttcctccagatccagctgctgattttgaacttttcgat
cgagttgttaatgttcggacattaggagtagctccgtatggcttgaaaggaactattgtc
ggaatacataaaggtaaagcagaaaacgagccggtaaattacgaaattttgtttgacgag
cctttcatgggaggtcactcattaagaggttcaagtgcatttgaaaacaaattatatgtg
atgccggcgtggtcgttactcaatctttcatatggtactcgcttggaatataaaaagaag
ggtattccatcaccactagtccaagctcgacagaagcgtcaacatggttctggacaccac
agcaagggggtaccggctgaatacaagcctagtaatagagggggctcgtatcatagagat
ttctactccgcttggcaaacgccaccgacaaacaatgatcgacaacatacgactcctaac
gagcgaactccgaacagcaaggagcgagctccgaaaggcaacgagcgagctccgaaaggc
aacgagcgagctccgaaaggcaacgagcgacattcaagttcacgaccccgttttgccagc
ccagaattcaactcctctgttaatcgttctcgcttttctccacgatggaacagcccgcgg
aacaacctgggaaataatccacaaaatcctcaggtttcttctcaaaattcacgtggtttt
cagaaacagtcacagccatcacatggttttgttgtagattctagtgcggcagtggacccc
aaagatcaattatccgcacaggaaagtgaacgcgtcattcgtcagcttcttaacttgaat
ggttcacaaggaacacagtcaacacccagttcatctcaagtcgtgtttaacatgccggat
aacgcctttatgactccttctttgtcgcctgtttctccattttcaccatcaagcaacccc
tctggcttgttagtatccgcgtgtcgtcaaaatcgttggccagaccctacgtttaatcat
caacgtatagctcagcacgtgatttcaacagtttgcgtggctgggaagttatttagtgga
cttccatccccgacaatcgaagatgcagtaaagagtgccgcgcattttgctttagtgtcg
ctctttccccacctgagttcgccattcgtatttcccccatcacccaatattcctccttcc
acaacgacacaccagctgcagcacaccagcgtcaaccaacaccaccatgaaagaacttct
tccaaaccaactcagggttccgaaaatagaaaatcagaaaagcctaccaatccttccagt
ggtcaaaaccttttcatacctcttcaggtctcattaaagaggaaagatgcagttagtacc
acaccaaataaaacatctgaaggcaatgagacaatggagcaaaaaacatctgcagaccaa
aatttaacaaatattcaggaaccaatgaatatcgagcaagacagtacccaagatcctgcc
aaaaccaagaatcaggaaaatgcccaggatcaaggcgataaaacccaagatccagataaa
accaaagatcctgacaatgctcaggatccaggccataaaacccaagatccaggtaaaacc
aaagatcctgacaatgctcaagatccaggcgataaaacccaagatccagataaaaccaaa
gatcctgacaacgctcaggatccaggcgataaaacccaagatccagataaaaccaaagat
cctgacaacgctcaggataaaggcaatacaacccaagatccaggtaaaaccaaagatcct
gacaatgctcaaaatccaggccataccaaagatcttgagaacaccaaagacagcgataaa
actcgggatccagctgaaacacacgaagaaacaaacacattaacagacattgatgtgaca
aggagaccaaaccagagcgaatcccatgtaaatgaaccgagaacaacgaaagctggcgca
aataaggagaaaccaaaattacttgcaccaagtttttttaagggaaaggaataa
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integrated database retrieval system
