Delftia sp. HK171: BO996_00720
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Entry
BO996_00720 CDS
T04584
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dhk
Delftia sp. HK171
Pathway
dhk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dhk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BO996_00720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dhk03021
]
BO996_00720
03400 DNA repair and recombination proteins [BR:
dhk03400
]
BO996_00720
Enzymes [BR:
dhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BO996_00720
Transcription machinery [BR:
dhk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BO996_00720
DNA repair and recombination proteins [BR:
dhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BO996_00720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5887
Hint
Motif
Other DBs
NCBI-ProteinID:
APE46481
LinkDB
All DBs
Position
complement(177604..181716)
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQSDVAPKKRTIEGLQAAFNSA
FPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV
VKEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDLLFFRVDRRRKMPVSILLKAIGLTPESILANFFVNDNFRLM
DSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTKFISVPEDFL
IGRVVAKNIVDPDTGEIIAKANEELTESLLKKLRSAGIQDLQCIYTNELDQGAYISQTLR
TDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRD
GATGPMVLSNEDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVADGKVTMEIDYLSAIEEGKYIIAQANADLDAEGRLIGDLVSAREKGDSTLVSAERVQY
MDVSPAQIVSVAASLIPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAVDS
GTVVTATRGGIVDYVDATRIVVRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
RGDKLAKGDVVADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILINERVVAEDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDVLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRYRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGAKIDKAYLDGVEKFHWFD
IRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGSTADIVLNPLGVPSRMNIGQVLEVHLGW
AGKGLGQRIGDMLQQEARAAEIRTFMEEIYNSRGRKEDLTQLDDKEIVSMAQALTTGVPF
ATPVFDGASEQEIQDMLHLAYPEELAQRKGLTESRTQAYLYDGRTGDRFERPTTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT
VKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttacaccgaacgcaagcgaatccgcaaaagcttcgggagccgcgacagc
gtgctcgaagtgccttacctgctgcagatgcaaaaagatgcatataccgcattcttgcag
tcagatgtagcccccaaaaaacgcaccatcgaaggcctgcaagcggccttcaactccgcc
ttccccatcgtctcccacaacggttttgtggagatgaagttcgtcgagtacaacctcgcc
aagcctgctttcgatgtgcgcgagtgccagacccgtggtctgacgttcgcctccgccgtg
cgcgccaaggtccagttgatcatctatgaccgtgagtcttcgacctcgcagtccaaggtg
gtcaaggaagtcaaggagcaagaggtctacatgggcgaagtgcccctgatgaccgaaaag
ggctcgttcatcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgctcgcct
ggcgtgttcttcgagcacgacaagggcaagacccacagctcgggcaagctgctgttctcg
gcacgcatcattccttaccgcggctcgtggctggacttcgagttcgaccccaaggacctg
ctgttcttccgcgtcgaccgtcgccgcaagatgcccgtgtccattctgctgaaggccatc
ggcctgacgccggaatcgatcctggccaacttcttcgtcaacgacaacttccgcctcatg
gattcgggcgcgcagatggagttcgtctccgagcgcctgcgcggcgaagtcgcgcgcttc
gacatcaccgacaagtcgggcaaggtcgtggtcgccaaggacaagcgcgtcaccgctcgc
cacacgcgcgagctggagcagtcgggcaccaagttcatcagcgtccccgaagatttcctg
atcggccgcgtggtcgccaagaacatcgtcgatccggacacgggcgagatcatcgccaag
gccaatgaagagctgaccgagtccctgctcaagaagctgcgcagcgccggcatccaggat
ctgcagtgcatctacacgaatgagctggaccagggcgcctacatctcgcagaccctgcgc
accgacgaaaccgtcgatgagttcgctgcacgcgtggccatctatcgcatgatgcgcccc
ggcgagccgccgaccgaagacgccgtgcaggccctgttccagcgcttgttctacaacccc
gacacctacgacctttcgcgcgtgggccggatgaagttcaacgccaaggtcggccgcgat
ggcgccaccggccccatggtgctgtccaacgaggacatcctggccgtggtcaagatcctg
gtggatctgcgcaacggcaagggcgaagtcgacgatatcgaccacctgggcaaccgccgt
gtgcgttgcgtgggcgaactggccgaaaaccagtaccgcaccggcctggcacgtatcgag
aaggctgtgaaggagcgtctgggccaggccgagcaagagccgctgatgccccatgacctg
atcaacagcaagccgatttcggccgccctgaaggaattcttcggtgcgtcgcagctgtcg
cagttcatggaccagaccaatcctctggccgaaatcacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggtctgacccgcgagcgtgcaggcttcgaagtgcgcgacgtgcacgtg
acccactacggccgcgtctgccctatcgaaacgcctgaaggcccgaacatcggcctgatc
aactcgctggccctgtacgcccgcctgaacgagtacggcttcatcgagacgccgtaccgc
cgggtggccgacggcaaggtcacgatggagatcgactacctgtcggccatcgaggaaggc
aagtacatcatcgcccaggccaatgccgacctggatgccgaaggccgcctgatcggcgac
ctggtgtctgcgcgcgaaaagggtgattcgaccctggtgtcggccgagcgcgttcagtac
atggacgtgtcgcccgcacagatcgtgtcggtggctgcctcgctgattccgttcctggaa
cacgatgacgcgaaccgcgcattgatgggcgccaacatgtcgcgtcaggccgtgcctgtg
ctgcgtcccgaaaagcccatggtgggcacgggcatcgagcgcgtggcggcagtggactcc
ggcaccgtggtgacggcaacccgcggcggtatcgtggactatgtcgatgcaacgcgcatc
gtggtccgcgtgaacgatgcggaagccgtggccggcgaagtcggcgtggacatctacaac
ctcatcaagtaccagcgttccaaccagaacaccaacatccaccagcgtcccatcgtcaag
cgtggcgacaagctggccaagggtgacgtggtggccgacggcgcatcgaccgacctgggc
gaaatcgccatcggtcagaacatgctgatcgccttcatgccctggaacggctacaacttc
gaggattcgatcctgatcaacgagcgcgtggtggccgaagaccgctacacctcgatccac
atcgaagaactcgtggtgatggcccgcgacaccaagctcggtgccgaggaaatcacgcgc
gacatcccgaacctgtccgagcagcagctcaaccgcctggacgagtccggcatcatctac
gtgggtgcggaagtgcagcccggcgatgtgctggtcggcaaggtcacgcccaagggcgag
accacgctgacgcctgaagagaagctgctgcgcgccatcttcggcgagaaggcttccgac
gtgaaggacacctcgctgcgcgtggaccagggctcgcaaggcaccgtgatcgacgtgcag
gtcttcacccgtgaaggcatccagcgtgacaagcgcgcccagcagatcatcgacgatgaa
ctcaagcgctaccgcctggacctgaacgaccagctgcgcatcgtcgaggccgacgccttc
gaccgtatcgaaaagctgctcaatggccgcgtggccaacggcggtccgcagaagctggcc
aagggcgccaagatcgacaaggcctacctggacggcgtggagaagttccactggttcgac
atccgtcctgcagaggacgaagtcgccacccagctcgagtccatcaagaactcgctggag
cagacgcgccacagcttcgacctggcttttgaagaaaagcgcaagaagctcacccagggc
gacgagctgcccgctggcgtgctcaagatggtcaaggtctacctggccgtcaagcgccgc
ctgcaacccggcgacaagatggccggccgccacggcaacaagggtgtggtctccaagatc
gttccggtcgaggacatgccctacatggccgacggctccactgccgacatcgtgctgaac
ccgctgggcgtgccttcgcgtatgaacatcggccaggtgctggaagtgcatctgggctgg
gccggcaagggcctgggccagcgcatcggcgacatgctgcagcaggaagcccgcgccgcc
gagatccgcaccttcatggaagagatctacaactcgcgcggccgcaaggaagacctgacg
cagctcgacgacaaggagatcgtgtccatggcgcaggcgttgaccacgggcgtgccgttt
gccacgccggtgttcgatggtgcgtccgagcaggaaatccaggacatgctgcatctggca
tatccggaggaactggcccagcgcaagggactgaccgagtcgcgcacgcaggcctacctg
tatgacggccgcaccggcgaccgcttcgagcgtccgaccaccatcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcccgctccacgggtccgtactct
ctggtgacgcagcagccgctgggcggcaaggcccagttcggtggccagcgtttcggggaa
atggaagtgtgggcgctggaagcttacggcgccgcctatgtgctgcaggaaatgctgacc
gtgaagtccgacgacgtggtgggccgtaccaaggtgtacgaatccatcgtcaagggcgag
cacgccatcgaggcaggcatgcccgagtcgttcaacgtgctggtcaaggaaatccgctcc
ctgggcctcgacatcgagcttgagcgttcttaa
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