Maridesulfovibrio hydrothermalis: DESAM_20394
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Entry
DESAM_20394 CDS
T02428
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dhy
Maridesulfovibrio hydrothermalis
Brite
KEGG Orthology (KO) [BR:
dhy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dhy03016
]
DESAM_20394
Enzymes [BR:
dhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DESAM_20394
Transfer RNA biogenesis [BR:
dhy03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DESAM_20394
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
CCO22681
UniProt:
L0RAT2
LinkDB
All DBs
Position
707030..707587
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AA seq
185 aa
AA seq
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MEKIRTFIAHPVPQQWKEILSAASAPLKLGLASRVAWVKPENMHFTLKFLGDVPADRIQE
IHTALQKIPFAPFEITAGRSGFFPEQAKPRIIWLGLSRGADELCRNGAAIDLKLAELNFE
KNQKPCHAHLTLGRIKKQAKDDWSALAERINQIKLPPAKVTSFTLYQSTLTPIGPIYSAI
YKYGE
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagatacgcacatttattgcacatccagtaccgcaacaatggaaagagatactc
agcgccgcctctgcccccctgaaattggggctggcttcaagggttgcatgggtaaaacct
gaaaacatgcatttcacgctcaaatttttaggcgacgttcccgcagaccgcattcaggaa
atacacacagcattacaaaaaatcccttttgcacctttcgaaataacagcaggccgatcc
ggatttttccctgaacaggctaaaccgcgtataatctggctcggcctttcgcggggagcc
gatgaattatgccgtaacggagcagccatcgatctaaagcttgcagaacttaattttgaa
aaaaaccaaaaaccctgccacgcgcacctcacgctgggcaggataaaaaaacaagctaaa
gacgactggtctgctctggccgaaagaatcaatcaaataaaattaccaccggccaaagta
accagctttacgctctaccagagcacacttaccccgatagggcctatttactctgctatt
tataaatacggtgaataa
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