Acidovorax ebreus: Dtpsy_2504
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Entry
Dtpsy_2504 CDS
T00853
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dia
Acidovorax ebreus
Pathway
dia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dtpsy_2504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dia03400
]
Dtpsy_2504
Enzymes [BR:
dia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dtpsy_2504
DNA repair and recombination proteins [BR:
dia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dtpsy_2504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ACM33940
UniProt:
A0A9J9UBC5
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All DBs
Position
2664544..2668047
Genome browser
AA seq
1167 aa
AA seq
DB search
MQLPKLSPEKRFTLPRPVGSADALLLARLGEREKAAGRTTAIVTADATDAQRLIDEMAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRIQQRDRDTGADVVLVPATTALYRL
APPSFLAGYTFHFKVKQKLDEAKLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSA
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARAKFRQRWRELLEG
DPTRSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGNEATVVLHGDLETAFQRFWQD
TRDRYRLIQGDPDHPTLPPEALFLGAEQFYAQANQHAQLSLRPGVEDVADNAQFQKLPDL
SVVRGAEDPLARLQAHIRATGQTGQRVLLLAESDGRRESLLDFLRASGLNPPAFDSLAEF
QGTPEERVGIATAALASGFAWMEEGLDLVTETELFAAGSTTRRRKKQEQASDVEALIKDL
SELKVGDPVVHNQHGIGRYRGLIHMDVGNKNPDGSPALQEFLHLEYADKAVLYVPVSQLQ
LIGRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAAREGHAFRYSP
NDYEQFANDFGFEETADQKAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRACFVAVA
GGKQVAFLAPTTLLAEQHYRTLSDRFSKWPVKVAEVSRFRSGKEITAAVKGIADGTVDIV
VGTHKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKQFRAEVDVLTLTATPIPRTMGMAL
EGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQ
KLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIISR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLDAIQQMEELGSGFYLAM
HDLEIRGAGEVLGESQSGNMMEIGFQLYNEMLAEAVKQLKAGKEPDLLAPMQAATDINLH
APALLPDDYCGDVHLRLSFYKKLATAKTGDQIDGLLEEIVDRFGKLPPQAQTLIDVHRLR
VLSAPYGVVKVDAAPGVITITFKPQPPVDPMAIIHLIQKNKHIKLAGNEKLRIERELPDP
AARAQMVRDVLRSLGQPLAEVQAAVPA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgcccaaactctcccccgaaaaacgattcaccctgccccgccccgtgggcagc
gccgacgccttgctgctggcccgcctgggcgagcgggaaaaggccgcaggccgcaccacc
gccatcgtcaccgccgatgcaaccgacgcccagcgcctcatcgacgagatggccttcttc
gcgcccgagttgcgctgcgcgctgtttcccgactgggaaacgctgccctacgacagcttc
tcgccgcaccaggacctgatcagcgagcggctggccacgctctggcgcatccagcagcgc
gacagggacacgggcgccgacgtggtgctggtgccggccaccacggcgctgtaccggctg
gcgccgccctcgttcctggcgggctacaccttccatttcaaggtcaagcagaagctcgac
gaggccaagctgcgcgcccagctcacgctcgcgggctaccagcatgtgtcccaggtggtg
ggccatggcgaatacgcggtgcgcggcgggttgatcgacctgttcccgatgggctcggcc
gtgccgtaccgggtggacctgttcgacgacgagatcgactccatccgcacgttcgacccc
gacagccagcgcagcctctacccggtgcccgaggtgcgcctgctgcccgggcgcgagttc
cccatggacgacgcggcgcgcgccaagttccgccagcgctggcgcgagctgctggagggc
gatcccacgaggagccgcatctacaaggacatgggcaacggcgtggccacggccggcatc
gagtactacctgccgctgttcttcgacgagacggccaccgtgttcgattacctgggcaac
gaagccaccgtggtgctgcacggcgacctggagacggccttccagcgcttctggcaggac
acgcgcgaccgctaccgcctgatccagggcgacccggaccaccccactctgccgccggag
gcgctgttcctgggcgccgagcagttctacgcccaggccaaccagcatgcccagttgtcg
ctgcgccccggtgtggaagacgtggcggacaacgcgcagttccagaagctgcccgacctg
tccgtggtgcgcggcgccgaggacccgctggcgcggctgcaggcgcacatccgcgccacc
gggcagaccggccagcgcgtgctgctgctggccgaaagcgacggccggcgcgagagcctg
ctggatttcctgcgggcctcggggttgaacccgccggctttcgattcgctggccgaattc
caggggacgcccgaagagcgcgtcggcatcgccacggcggcgctggcctcgggcttcgcg
tggatggaagaagggctggacctggtcaccgagaccgagctgttcgccgccggctccacc
acgcgccggcgcaagaagcaggagcaggccagcgacgtcgaagcgctgatcaaggacctg
tccgagctgaaggtgggcgaccccgtggtgcacaaccagcacggcatcgggcgctaccgc
ggcctcatccacatggatgtgggcaacaagaaccccgacggcagccccgcgctgcaggag
ttcctgcacctggaatacgccgacaaggccgtgctctacgtgcccgtgagtcagctacag
cttatcggccgctacacgggcgtgtctgccgacgaggccccactgcacaagctgggcagc
ggccagtgggaaaaggccaagcgcaaggccgccgagcaggtgcgcgacgccgcggccgag
ctgctcaacatctacgcccgccgcgccgcgcgcgaggggcatgccttccgctactcgccc
aacgactacgagcagttcgccaacgacttcggcttcgaggagaccgcggaccagaaggcc
gcgatccacgccgtggtgcaggacatgatcagcccgcgccccatggaccgcctggtctgc
ggcgacgtcggctttggcaagaccgaggtggcgctgcgcgcctgcttcgtggccgtggcc
gggggcaagcaggtggcgttcctggcgcccaccacgctgctggccgagcagcactaccgc
acgctgagcgaccgcttcagcaagtggcccgtgaaggtggccgaggtctcgcgctttcgc
tcgggcaaggagatcaccgccgccgtcaagggcattgccgacggcacggtggacatcgtc
gtgggcacgcacaagctgctcagcgaatcgacccagttcaagaacctgggcctgctcatc
atcgacgaggaacaccgcttcggcgtgcgccacaaggaggcgatgaagcagttccgcgcc
gaggtggatgtgctcacgctcaccgccacgccgatcccgcgcaccatgggcatggcgctg
gaggggctgcgcgacctgtccgtgatcgccaccgcgccgcagcggcgcctggccatcaag
accttcgtgcgcaacgaaggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaaa
cgcggcggccagtgctacttcctgcacaacgaggtcgagaccatcgagaaccggcgccag
aagctcgaagagatattgcccgaggcgcgcatcgccgtggcccacggccagatgcccgag
cgcgagctggagcgcgtgatgcgcgacttcgtggcccagcgctacaacatcctgctgtgc
tcgaccatcatcgagaccggcatcgacgtgcccacggccaacaccatcatcatcagccgc
gccgacaagttcggcctggcgcagctgcaccagttgcgcgggcgcgtggggcgcagccac
caccaggcctacgcctacctgatggtgcccgacatcgacggcctgaccaagcaggcgcag
cagcgcctggacgccatccagcagatggaggagctgggcagcggcttctacctggccatg
cacgacctggagatccgcggcgcgggcgaggtgctgggcgagagccagagcggcaacatg
atggagatcggcttccagctctacaacgagatgctggccgaggcggtgaagcaactcaag
gctgggaaggagcccgatctgctcgcccccatgcaggccgccaccgacatcaatctgcac
gccccggccctgctgcccgacgactattgcggcgacgtgcacctgcgcctgtcgttctac
aagaagctggccacggccaagaccggcgaccagatcgatggcctgctcgaagagatcgtg
gaccgcttcggcaagctgccgccgcaggcgcagacgctgatcgacgtgcaccgcctgcgc
gtgctgtccgcgccctacggcgtggtgaaggtggatgccgcccccggcgtgatcaccatc
accttcaagccgcagccgccggtggaccccatggccatcatccacctgatccagaagaac
aagcacatcaagctggcgggcaacgagaagctgcgcatcgagcgcgagctgcccgacccc
gccgcgcgcgcccagatggtgcgcgacgtactgcgcagcctgggccagccgctggccgag
gtgcaggccgccgtccccgcttag
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