Dyella japonica: HY57_18580
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Entry
HY57_18580 CDS
T03215
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dja
Dyella japonica
Pathway
dja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HY57_18580 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dja03021
]
HY57_18580 (rpoB)
03400 DNA repair and recombination proteins [BR:
dja03400
]
HY57_18580 (rpoB)
Enzymes [BR:
dja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HY57_18580 (rpoB)
Transcription machinery [BR:
dja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HY57_18580 (rpoB)
DNA repair and recombination proteins [BR:
dja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HY57_18580 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Thioredoxin_4
Motif
Other DBs
NCBI-ProteinID:
AIF49112
UniProt:
A0A075K620
LinkDB
All DBs
Position
complement(4294545..4298702)
Genome browser
AA seq
1385 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQRDDKGLHAALKSV
FPIVSYSGNAALEYVDYRLGEPPFDERECRNRGMTFGAPLRVTVRLVIYDKDSPASKKAV
KYVKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYSNVEMLDVFFEHNVFHLGK
KGGTTLELVAERLRGETLTFDLTIGDKVLVEAGKRITARHVRQLAAENITALEVPDDYPV
GRILAIDVIDPKTGELLAQANDEITAEQLENFRKAGIEVVPTLYVNDLDRGAYISHTLRI
DNTKTPLEALVEIYRMMRPGEPPTKDAAQNLFYNLFFTFDRYDLSAVGRMKFNRRVGRQE
IVGPGVLYDKKYFQDRKEEEAQELVKSQGDQSDILDVLKVLIDIKNGHGTVDDIDHLGNR
RVRSVGEMAENTFRIGLVRVERAVRERLSLAESEGLTPQELINAKPVAAAVKEFFGSSQL
SQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGL
INSLAVYARTNQYGFLETPYRKVVGGKVTDQVDYLSAIEEGDHVIAQANSPLKDGAFIED
FVSCRFRGESELRPSAEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQTPLVGTGIERAVARDSGVIVTAKRGGVIDQVDAGRIVVRVNEEEVGDNDAGVDIYT
LTKYTRSNQNTNLNQRPLVNVGDVVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGYNF
EDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGIVY
IGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQ
VFTRDGIEKDKRARQIEEMEIKRIRKDLDDQFRILEGAIYNRMRTQLVGKTAMSGPGGLK
RGAEITDAYLDGLKRDDWFKINVKEEDVTEFLERAADQVKRHKEEFDKRFKEKQGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPFSEDGTSVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMLEAQAKVAQIREFLDQVYNHHVAGAVQH
VDLKSLTDEEILALANNLQEGVPMATPVFDGAEETEIKAMLKLADLPESGQTTLYDGRTG
EAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMAAGMPESFNVLVKEIRSLGIDID
LEEVK
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcctactcgtttaccgagaagaagcgcatccgcaaggatttcggcaagcgtccccct
gttttgggcgttccgaacctgctgaccatccagaccgattcctatcgcgaattcctgcag
gagcacgtggctcccaagcagcgtgatgacaagggtcttcacgccgcgctgaagtcggtg
ttcccgatcgttagctactcgggcaatgctgcgctcgagtacgtcgactatcgcctgggc
gagcccccgtttgacgagcgcgagtgccgcaaccgcggcatgaccttcggtgcgccgctg
cgcgtgaccgtgcgcctggtcatctatgacaaggacagcccggcgtccaagaaggccgtg
aagtacgtgaaggagcaggaagtctacatgggcgaaattccgctcatgaccgacaccggc
accttcatcatcaacggcaccgagcgcgtcatcgtctcgcagctgcatcgttcgccgggc
gtgttcttcgatcacgaccgcggcaagacgcacagctcgggcaagctgctgttctcggcg
cgcgtgattccttaccgcggctcttggctggacttcgagttcgacccgaaggacgcgctg
ttcacccgtatcgaccgtcgccgcaagctgccggtgacggtgctgctgcgcgcgctcggc
tacagcaacgtcgaaatgctcgacgtgttcttcgagcacaacgtgttccacctgggcaag
aagggtggcaccacgctggagctcgtcgccgagcgcctgcgcggcgaaacgctgaccttc
gacctgaccattggcgacaaggtgctggtggaagccggcaagcgcatcaccgcgcgtcac
gtgcgtcagctcgctgccgaaaacatcaccgcgctggaagtgccggacgactacccggtc
ggccgcatcctggccattgacgtcatcgatccgaagaccggcgaactgctggcccaggcc
aacgacgagatcaccgccgagcagctggaaaacttccgcaaggccggcatcgaagtcgtg
ccgacgctgtacgtcaacgacctcgatcgcggtgcgtacatctcgcacaccctacgcatc
gacaacaccaagacgccgctcgaggcgctggtggaaatctaccgcatgatgcgcccgggc
gagccgccgaccaaggacgccgcgcagaacctgttctacaacctgttcttcaccttcgac
cgttacgacctgtcggccgtgggtcgcatgaagttcaaccgtcgcgtgggccgccaggag
atcgtcggtccgggcgtgctgtacgacaagaagtacttccaggaccgcaaggaagaggaa
gcccaggaactggtgaagtcgcagggcgaccagtccgacatcctcgacgtgctcaaggtg
ctcatcgacatcaagaacggtcatggcaccgttgacgatatcgaccacctgggcaaccgt
cgcgtgcgctcggtcggtgaaatggccgagaacaccttccgcatcggcctggtgcgcgtc
gagcgcgcggtgcgcgagcgcctgtcgctggccgagtccgaaggcctgaccccgcaggaa
ctgatcaacgccaagccggtcgcggcggcggtgaaggagttcttcggttcgtcgcagctc
tcgcagttcatggaccagaacaacccgctgtccgaagtgacgcacaagcgtcgcgtctcg
gcactgggcccaggcggtctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcac
ccgacccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctg
atcaactcgctcgccgtgtacgcgcgcaccaaccagtatggcttcctcgagacgccgtac
cgcaaggtcgtgggcggcaaggtgaccgaccaggtggattacctgtcggccatcgaagaa
ggcgaccacgtcattgcgcaggcgaactcgccgctcaaggatggcgctttcatcgaagac
ttcgtgtcctgccgtttccgcggcgagtccgagctgcgtccgtccgccgaagtcgactac
atggacgtctcgcccatgcagacggtgtcggtcgctgccgcactcgtgccgttcctggag
cacgatgacgcgaaccgcgcactcatgggcgcgaacatgcagcgtcaggccgtgccgacc
ctgcgttcgcagaccccgctggtcggtaccggtatcgagcgcgccgtggcgcgtgactcg
ggcgtcatcgtcaccgccaagcgcggtggcgtgatcgaccaggtcgacgccggccgtatc
gtggtgcgcgtgaacgaagaagaagtcggcgacaacgatgccggcgtcgatatctacacg
ctgaccaagtacacccgctccaaccagaacaccaacctcaaccagcgtccgctggtgaac
gtgggtgacgtggtggcgaagggcgacacgctggccgacggttcgtcgaccgatctgggc
gagctcgcgctcggccagaacatgctgatcgccttcatgccgtggaacggctacaacttc
gaagactcgatcctgctctccgagcgcgtcgtgcaggaagaccgctacacctcgatccac
atcgaggagctgtcgtgcatcgcgcgtgacaccaagctgggcgccgaggaaatcaccgcc
gacatcccgaacgtgggtgagcaggcgctggctcgcctcgacgaatccggcatcgtgtac
atcggtgcggaagtgaaggccggcgacatcatggtcggcaaggtcacgcccaagggcgag
agccagctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtccgac
gtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtgcag
gtcttcacccgcgacggtatcgagaaggacaagcgcgctcgtcagatcgaggaaatggaa
atcaagcgtatccgtaaggaccttgatgaccagttccgcatcctcgaaggcgcgatctac
aaccgtatgcgcacccagctcgtcggcaagaccgcgatgagcggcccgggtggcctgaag
cgtggcgccgagatcaccgacgcctacctcgacggcctcaagcgcgacgactggttcaag
atcaacgtcaaggaagaggacgtcacggaattcctcgagcgcgcggccgaccaggtcaag
cgtcacaaggaagagttcgacaagcgcttcaaggagaagcagggcaagatcacccagggt
gacgaccttgctccgggcgtgctcaagatggtcaaggtgttcctggccgtgaagcgtcgc
atccagccgggcgacaagatggccggtcgccacggtaacaagggtgtggtgtccaacgtg
gtgccggtggaggacatgccgttctccgaagacggtacttcggtcgacatcgtgctgaac
ccgctgggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcaccttggctgg
gccgcaaagggcctgggcaagaagatccagaagatgctcgaggcgcaggccaaggtcgcg
cagatccgcgagttcctcgaccaggtgtacaaccaccacgtcgcgggcgccgtgcagcat
gtcgacctgaagtcgctgaccgacgaggaaatcctcgccctggcgaacaacctgcaggaa
ggcgtgccgatggccaccccggtgttcgacggtgccgaggaaaccgagatcaaggcgatg
ctcaagctcgccgatctgccggagtcgggccagaccacgctgtacgacggccgcaccggc
gaggcgttcgatcgcccggtcaccgtgggctacatgcactacctgaagctgaaccacttg
gtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgtcacgcagcagccg
ctgggtggtaaggcgcagttcggtggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacattgtcgacggcaaccacgagatggcggcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggtatcgatattgat
ctggaagaagtgaagtga
DBGET
integrated database retrieval system
