Diospyros lotus (date-plum): 127802100
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Entry
127802100 CDS
T10632
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC127802100
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127802100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127802100
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127802100
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127802100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
127802100
NCBI-ProteinID:
XP_052193750
LinkDB
All DBs
Position
5:12262865..12369624
Genome browser
AA seq
2288 aa
AA seq
DB search
MFAHSSAILGHIHFLLETVDESNSDDVFSGALPGVNYCMTQIGELLAGNLCVNSVEQIQN
IFMFLHHSEGLSKHLDSFMKMASSMRLKEGNQFILSPLLPDELLETTLRKLDLFEDNEDE
FDSIILEMEKEMSMADIMKELGYGCTANVPQCKEILSLFLPLTEIMVSKILGAIAQTHSE
MEDNYSDFSTFCSALGCRLSDMPSLSSWNIDVLIDSINQLSPGINWMSVFESLDHEGFYF
PDEAAFSFFMSVYRHTCKEPFPLHTICGSVWKNTEGQLSFLKYAVSVPPEVFNFAHSARQ
LGYFHAVSDHKFRLGHPNHAWLCLELFEVLCQLAERGHVSDIRPMLKDPLEHCPEVLLLG
MAHINTAYNVLQNEITSTVLPMMLKNSTASVVARHLWHVNPNLLLRGFLDTYDIDPSNMS
RILDICQELKIVLPVLDMVPSYFGIRLAALASQKELIDMKKWLISNLSTYKDIFFEECLK
LLKEIQFGISQGVSSEHPSHSGAVWKLYSETSPTILKVLRAHKGLTICRQISHELEKLHI
TFMNATSRMKNYSADNLLPSDLERGEEAANSYFYKMFTGELTTDEMIKMLARLKESNEKR
EQSILKCIISNLFEEYDFFSMYPEEQLKLTAILFGSLVKHRIVTDLTLGIALQGVLDALH
KPADSKMFMFGTIALEQFVDRLIELPQYCNLILQIAHLRATHSELVAFAERALSRISSGH
SESVLGHNADSDQQHGSVQATSTNMEVPVSSSSPIGSVNTQLGSQISSSTQPQQRHEACL
ENTQKVSVSSSEQPCIKCIDAKPSVVDLSDAAAIQKSQSATSASAAPSSSLGFSRPSKPF
SLARFGSALNIETLVAAAEKRETPSEAPASEIQENISFMINNLSAANIESKAKEFTEILK
EQYYPWFAQYMVIKRASIEPNFHDLYLKFLDKVNSKTLQRDILQATYENCKVLLGSELIK
SSSEERSLLKNLGSWLGKITIGKNQVLRAREIDPKSLIMQAYEKGLMIAVIPFTSKILEP
CPSSLAYRPPNPWTMSILQLLAEIHAMPSLKMNLKFDIEVLFKNLDVDLKAEPPTSLLKD
RIRKAEGNPDFSSKDARQQIVDAVKPGMPSTQNGVQLPLDIGSPSHPSGHSSLISQHPVS
LQVSSATATEEKVLAVALSNQLPSGQRLLQQSPISDIQLQMSVSNIEQQITVNPKLHALG
LHLQFQRAIPIAIDKAIKEVVSNIVQRTFSIASQTTREMISKDFAMELDETRLWNVVHLM
VASLAASLAYIACKGHLRRSVTSQLRVSLQDLNIASELLEQAVQLVTDDNLDLGCALIVH
AAKNKAIHSIDXEIGQQLAIRRKHIEDVCPKYFNSALHTKGHAGIYEESVWLPWLNQSKH
SSEVPSVGSSASSAVGVSNRLTSSSGKLNPGLSSSGSRRAGFNADAEPFYLVPEWSSHLH
SVPSPFTSATGRVGLQQFENDALGASLPSASAPEILSVETSNNTEEMASSSQPLLSTSAR
EPPRSSASEPLLTTGEALEKYQIISEKVETLVTNGAKVADIQAVILEVPEIFLRCVSRDE
AALAVAQKVFRVLYENTSDTVHVAARLAVLAAIRDASKLVVKELTSWVLHSDEDRKFNKD
ITIGLIRHELLNLAEYNVYMAKMVDAGKNSAATEFAISLIETLLVNDSRVISELHDIIEA
LSKLAAAAGSPKSLQHLVEVARNPAAYPTAVSVGEEDDTRQVREEASGYSTGSREDCNVL
ESEEPDLDGFYEKVTMLFAEWHEITSLPGANDATYALYALKLQQSGMLKGDDNLDHFFHW
LMKLSVSHCLASEMISSGTLQSEVKPISYLAIDLYAKLVFSIIKFFPPEQGSNNLSLLPK
ILDVIVKNMQKDAEEKKLSFDPRPYFRLFSDWLLDLISLDPICDVANFQVLAAFANAFHV
LQPLKVPGFSFAWIELVSHRNFMPKLLTGNAQKGWPYMQHLLVDLFQFLEPFMRKPAWPA
PVQFLYKGMLRVLLVLKHDFPEFLSSYHFSFCDVIPQSCLQMRNIILSACPHNLRIPDPF
TANLKIDPLVELTKYPCILSDVDAALREKQIKGDIDEYLKTRQQGSSFLTELKQELLLLP
RDASQDGTRYNVPLINSLVLYLGMQDVRQLQARTANCTKSTASNDAAVFLDGPALDIFRT
LLLDLDSEGCYLVLSAMANQLRYPNDLTSYFAVALLHIFYESNQEAVQERITRVLSERLI
VREPHPWGVLVTFLELIKNPKYNFWSRSFTRCAPEEIMKFFQSVSRGCAGPIPENQAGSS
RRPSDNMK
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctcactcttcggccatcttgggccacattcacttcctgctcgagacagtcgac
gaatcgaactccgacgacgtcttttcaggagctttgccaggggtgaactactgcatgact
caaattggggaactacttgctggaaatttgtgtgtcaactctgttgagcaaattcagaat
atttttatgtttcttcatcattctgagggtctctccaagcatttagattccttcatgaaa
atggcatcttcaatgcgattgaaagaggggaaccaatttattttgtctccgttgcttcct
gacgaactgcttgagactaccttgaggaagttggatttgtttgaagacaatgaggatgaa
tttgattctattattttagaaatggaaaaggagatgagcatggctgatataatgaaggaa
ttgggttatggatgcacagctaatgttccacagtgcaaagagatattatctctcttctta
ccgctgactgaaatcatggtctctaagatacttggtgcaattgctcaaacacattctgag
atggaggacaattacagtgatttttcaactttctgttctgctcttggttgccgtctgtct
gatatgccatcattgagttcatggaatattgatgttcttatagattcaatcaatcagctt
tctcctggaatcaactggatgagtgtttttgaaagcctagatcatgagggattctacttc
cctgatgaggcggcattttccttctttatgtcagtctacaggcatacatgcaaggaacca
ttcccactccataccatctgtgggtctgtttggaagaatacagagggccaactatctttt
cttaagtatgctgtttcagtaccacctgaagtgtttaactttgcacattctgcaagacaa
ctgggatattttcatgctgtgtctgatcataagtttcgacttggacatcccaaccatgca
tggttgtgccttgaacttttcgaggtgctgtgtcagctagctgagaggggtcatgtcagt
gacatacgaccaatgctcaaagatccccttgagcattgccctgaagtcttactgcttggg
atggctcatattaatactgcttataacgtcctccagaatgaaatcacttcaactgttttg
cccatgatgcttaaaaatagcacagcaagtgttgtggctcgtcatctctggcatgttaac
cctaatcttttgctgcggggatttttagatacttatgacattgatccgagcaatatgagt
agaattttagacatctgccaggagctaaagatagtcttgccggtattggatatggttcct
tcttattttggcattagactggctgcccttgcttctcaaaaagaacttatagacatgaag
aaatggttgatttctaatttaagtacttacaaagatattttctttgaggagtgcctcaaa
cttctaaaggaaattcagtttggcatatctcagggagtttcttctgaacatcccagccat
tctggtgctgtatggaaactttattcagagactagtcctaccatactgaaggttcttcga
gctcacaagggcttgactatctgtagacagatttctcatgaattggagaagttgcacata
accttcatgaatgctacttcaagaatgaagaattatagtgctgataatttgttgccctct
gaccttgagaggggggaggaggcggcaaattcttacttctataagatgtttactggtgaa
ctaactactgatgaaatgattaaaatgcttgctcgactcaaagaatctaatgagaaaagg
gaacaatcgattttaaagtgcataatcagcaatctatttgaagaatacgattttttctcc
atgtaccctgaggagcagctcaaacttaccgcaattctatttggctctcttgtcaagcat
cggatagtaactgatctcactcttggtattgccctccaaggtgttttggatgcattacat
aaacctgcagatagtaaaatgttcatgtttgggaccatagctctggaacagttcgtggac
cgtttgattgagttgccacagtactgcaatcttatcttacaaatagctcacctgcgtgct
actcattctgagcttgttgcatttgctgaaagggcactttccaggatatcatctggtcat
tcagagtcagttctcggacataatgcagattctgatcaacaacatggttctgttcaagct
acatcaacaaatatggaggtgcctgtttcatcatcctcaccaattggatctgttaacaca
caacttgggtcgcaaatttcttcttcaactcagcctcaacaaagacatgaagcttgcttg
gagaacactcaaaaagtttctgtatcatcttctgagcaaccttgcataaaatgcattgat
gcaaaaccttcagttgttgatctgagtgatgcagcagccattcagaagtcccagagtgca
acaagtgcttcggctgctccatcttcctcgttggggttttctcgtccatctaaaccattt
tccttagcaagatttggctctgctttgaatattgaaacacttgttgctgctgcggagaaa
agggagactccttcagaggctccagcatctgagattcaggagaatatctcatttatgatt
aacaatttatctgctgcaaatattgaatccaaagcgaaagaatttactgaaatcttgaaa
gagcagtactatccttggtttgctcagtacatggtaattaaaagggcaagcattgagcca
aattttcacgacttgtacttgaagttcctagacaaagttaactcaaaaactttgcagaga
gacattctacaagccacttatgagaactgcaaggttctattgggctcagaacttataaaa
tcaagttctgaagagcgttccttgctgaagaatctgggaagttggctgggaaagattaca
attggtaaaaatcaagttttgagggcacgagagattgaccccaaatctttgatcatgcag
gcttatgaaaagggtttgatgattgcagtaattccattcacctccaagattttggaacca
tgcccaagcagtctggcttaccgacctcctaatccttggaccatgtcaattcttcaatta
cttgctgagattcatgcaatgccaagtttaaaaatgaaccttaagtttgacattgaggtc
ctattcaagaaccttgacgttgatctgaaggcagaacctccaacttcacttctgaaggat
aggatacgaaaagctgaaggaaatccggacttctccagcaaagatgctcgacaacagata
gttgatgcagtcaaacctggtatgccatctacccaaaatggggttcaactaccacttgat
attggcagcccatctcatcccagtggccattcaagtttaatatctcagcatcctgtttct
ctccaagtttcttctgctacagcgactgaggaaaaggtgttagctgtagctctctcaaat
cagctcccttctgggcaaagactgctacaacaatcgccaatttctgatattcagcttcaa
atgtctgtatcaaatattgaacaacaaattactgtaaacccaaagcttcatgcccttggc
ctccacctgcaattccagagagccattccaattgctatagataaagcaatcaaggaggta
gtttccaatatagtgcagcgtactttttctatagcaagtcaaacaacaagggaaatgatt
tcgaaggattttgccatggagttagatgagacccgcttatggaacgtagtgcacttgatg
gttgccagtctggctgcaagtttagcttatatagcatgcaagggacatctgcgtagatca
gtaacaagtcagcttagggtttcgcttcaggatctaaacatagcaagtgaacttcttgaa
caagctgtgcaacttgttactgatgataaccttgatctgggctgtgcactgattgtacat
gctgcaaaaaataaggcaatacactccattgatngagaaataggtcaacaacttgctata
aggaggaagcacatagaggatgtatgtcctaaatattttaattcggctctacatacaaaa
ggtcatgctggtatttatgaggagtcggtttggttaccctggctgaatcagtcaaagcat
agctcagaggtcccttcagttggttcttcagcttcatctgcagttggtgtgtccaatagg
cttacttcatcatcaggaaaactgaacccaggcctttcttcttctggttcacggagagca
ggatttaatgcagatgctgaacccttttatcttgtccctgagtggagttcacatcttcat
agtgtgccctctccttttactagcgcaactggtagagttggtctacaacagtttgaaaat
gatgctcttggtgcatcacttccttctgcctcagctcctgaaatactttctgtggaaact
tccaacaatacagaagaaatggcatcttcttcacagccattactttcaacttctgcaaga
gagcccccaagaagtagtgcttcagagcctttgttgaccacaggtgaagcattggagaaa
taccaaataatttcagaaaaggtggaaactctggtaacaaatggtgctaaagttgcagat
attcaggctgttattcttgaggttcctgaaatttttctcagatgtgtaagccgagatgaa
gctgcattagctgtggctcaaaaggttttcagggttttatatgaaaatacatcagatact
gtacatgttgctgctcgtctagctgttctggctgccattcgtgatgctagtaagcttgtg
gtcaaggagctgactagttgggtgctccactctgatgaggatcgcaaatttaacaaagat
ataacaatcggccttattcgccatgaattgctaaaccttgcagagtacaatgtttatatg
gctaagatggttgatgcgggaaagaatagtgctgcaactgagtttgctatttcccttatt
gaaacattgttggttaatgattccagggttatttctgaactacatgatatcattgaagcg
ttgtcaaagcttgcagcagcggctggatctccaaaatcattacaacatctggttgaagtt
gccaggaatcctgctgcctatccaactgctgtttctgttggagaggaggatgacactaga
caagtgagagaggaagcttctgggtactctacaggaagcagggaagactgtaatgttctg
gagtcagaggaacctgatttggatggtttttatgagaaggttactatgctgtttgcggaa
tggcacgagataacttcacttcctggtgcaaatgatgcaacatatgccctttatgcctta
aaattgcagcaaagtggaatgctaaaaggagatgacaacttggatcattttttccactgg
ctcatgaagctttcagtatcacattgcctggcctctgagatgattagttctggcactctt
caatcagaagtcaagcccatctcctaccttgctattgacctttatgcaaagcttgttttt
tcaatcataaagtttttccctccagagcagggttcaaacaatctctctcttttgcccaag
attctagatgtgattgtgaaaaacatgcagaaggatgcagaggagaagaaattatctttt
gatccaaggccatatttcaggttatttagtgactggttgctggacctgatttctctggat
cctatttgtgatgttgcaaactttcaggttttggcagcttttgcaaatgcgttccatgtt
cttcagccccttaaagttcctggattcagctttgcttggattgagcttgtgagtcatcgg
aatttcatgccgaaattgcttactggaaatgctcagaaggggtggccttatatgcaacat
ttgctggtagacttatttcaattcctagagccattcatgaggaaacctgcatggccagca
ccggttcaatttctatacaaaggcatgctaagggtgttgctagtgctaaagcatgacttc
cctgagttcctttccagttatcactttagcttttgtgatgtcattcctcagagctgctta
cagatgcgaaacataatcctcagtgcatgtccccataatttgaggataccagatccattt
accgcaaacctaaagattgatccattggtagaacttacaaaatacccatgtattctctct
gatgttgatgccgctcttagagaaaaacagattaagggtgacatagatgagtatttaaag
acgaggcaacagggctcttcgtttttaactgaattgaagcaggaactgctgcttttacca
agggatgctagccaggatgggacccggtataatgtaccattgatcaactcacttgtgctt
tatctcggaatgcaggacgtacggcagctgcaagcaagaactgctaattgcaccaagtca
actgctagtaatgatgcagctgtcttcctagatggccctgccttggacatcttccgtact
ttacttctggatcttgattctgaaggctgctatctggttctgagtgcaatggctaaccaa
ctacgttatccgaacgaccttacaagttactttgctgtcgcccttcttcacatattttat
gaatcaaaccaggaagcagtgcaggagagaattacaagggttctgtcggaacgcctgatt
gtccgcgagcctcatccatggggtgttttggttacgttcttggagctgattaagaatcct
aaatacaacttctggagccgatctttcacgaggtgtgccccagaagagatcatgaagttc
tttcaatctgtctcgaggggctgtgcaggccccatacctgagaaccaggctggatcctca
aggcgcccatccgacaacatgaaataa
DBGET
integrated database retrieval system
