Diospyros lotus (date-plum): 127808941
Help
Entry
127808941 CDS
T10632
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127808941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127808941
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127808941
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127808941
Complex C
U5 SnRNP specific factors
127808941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
Motif
Other DBs
NCBI-GeneID:
127808941
NCBI-ProteinID:
XP_052203640
LinkDB
All DBs
Position
8:complement(11677926..11696793)
Genome browser
AA seq
2181 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAY
RGRPPELDEKLKKASSKKKKEREALASEPMPTRQSKRRRLQEESVLTSTDEGVYQPKTKE
TRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIEKLLNPIPNQI
FDQLVSIGKLISDYHDGGDAGGSAAANGDDALDDDVGVAVEFEENEEEEEESDLDMVQED
DEEEDDVMEGTGAGAMQMGGGIDDDDTQAADEGMTLNVQDIDAYWLQRKISQAYEQQIDP
QQSQKLAEEVLKILAEGDDREVETKLLVHLQFEKFTLIKYLLRNRLKIVWCTRLARAEDQ
EKRKKIEEEMLGLGPELAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGVDGEWG
RRGLVDRDADGGWVKGQRQLLDLDSLSFHQGGLLMANKKCELPLGSYRNHRKGYEEVHVP
ALKPKPLDPGEELIKISDMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG
KTNVAMLTILQQIALHRNEDGSFDRSNYKIVYVAPMKALVAEVVGNLSNRLQHYDIKVKE
LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLNKGLFHFDNSYRPCPLAQQ
YIGITVKKPLQRFQLMNDVCYEKVIDIAGKHQVLIFVHSRKETAKTARAIRDTALANDTL
GRFLKEDSVSREILHSHTELVKSNDLKDLLPYGFAIHHAGMARADRQLVEDLFADGHVQV
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI
IITGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREALSWLGYTYLYIR
MLRNPTLYGLAPDALATDITLEERRADLIHSAAIILDKNNLVKYDRKSGYFQITDLGRIA
SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLA
EKALNLCKMVSKRMWSVQTPLRQFHGIPNEILMKLEKKDIAWDRYYDLSSQELGELIRFP
KMGRTLHKFIHQFPKLNLAAHVQPITRTVLKVELTITPDFQWEDKVHGFVEPFWVIVEDN
DGEYILHHEYFLMKKQYIDEDHTLSFTVSIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH
LILPEKYPPPTELLDLQPLPVTALRNPSYESLYQEFKHFNPVQTQVFTVLYNTDDNVLVA
APTGSGKTICAEFAILRNHQKGPEAIMRAVYIAPIEALAKERYNDWKKKFGEGLGMRVVE
LTGETAMDLKLLEKGQLIVSTPEKWDALSRRWKQRKHVQQVSLFIVDELHLIGGQGGPIL
EVIVSRMRYIASQVENRIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI
QGIDIANFEARMQAMSKPTYTAIVQHAKNGKPAIVFVPTRKHARLAAVDLMTYSSADSGE
KPMFLLQSAENLEPFISRIKEPMLRETLQYGVGYLHEGLATTDQDIVKTLFETGWIQVCV
MSSSMCWGVPLSAHLVVVMGTQYYDGRENSHTDYPVTDLLQMMGHASRPLVDNSGKCVIF
CHAPRKEYYKKFLYEAFPVESHLQHFLHDNLNAEVVVGVIENKQDAVDYLTWTFMYRRLT
QNPNYYNLQGVSHRHLSDHLSELVEGTLSDLEASKCVAIEEDVELSPLNLGMIASYYYIS
YTTIERFSSSLTSKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCT
DPHVKANALLQAHFSRQVLGGNLASDQREVLLSASRLLQAMVDVISSNGWLNLALQAMEL
SQMVTQGMWERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRELLQISDI
QLMDIARFCNRFPNIDLSYDVVDGDNVGAGEDVSLQVTLERDLEGRTEVGPVDALRYPKA
KEEGWWLVVGDTKTNQLLAIKRVSLQRKAKVKLDFAAPGEAGKRTYTLYFMCDSYLGCDQ
EYSFSVNVKEAGAIDDDSGRE
NT seq
6546 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggcggcggtgcggaggcacacgcccgtttcaagcagtatgaatatcga
gccaactcgagtcttgtgctgaccactgattctcggcctcgcgacacccacgagcccact
ggcgagcccgagtccctctatggcaagatagatcccaagacctttggcgaccgtgcttac
aggggtagaccccccgaattagacgagaaactcaaaaaagctagtagcaagaagaagaag
gagcgtgaagcacttgcttctgaacccatgcctaccaggcagagcaagagaaggcgcctc
caagaagagagcgtactcacttcgacagatgaaggagtttaccagcctaagaccaaggaa
actagggcagcctatgaggccatgcttagtgtcattcaacagcagttgggtggccaaccc
ctcaacatagttagtggtgcggctgatgagatattggctgtcctcaagaacgagacagta
aaaaatcccgacaagaagaaggagattgagaaactcttgaatcccattccaaatcaaatt
tttgaccagctagtttccattgggaagcttatctctgattatcatgatggtggtgatgct
ggtggttcggctgcagctaatggtgatgatgctctggatgacgatgttggtgttgctgtt
gagtttgaagagaacgaagaggaggaagaagaaagtgatcttgatatggtgcaggaggat
gacgaagaggaagatgatgtgatggaaggaactggtgctggtgccatgcagatgggtggt
ggaattgatgatgatgacacacaggcagctgatgaaggcatgacacttaatgtgcaagat
attgatgcatattggcttcagaggaagatttctcaggcatacgagcaacagatagacccg
cagcagagccagaagcttgcagaggaggttcttaagatcctagctgaaggtgatgaccgc
gaagttgaaacgaagttgttagtgcatctccaatttgagaagttcaccctcattaagtat
ctgttgcgaaacagactgaagatagtatggtgtacccgtctagccagggctgaagaccag
gagaagaggaagaaaattgaagaagaaatgttgggattggggccagagttggctgcgatt
ttggagcagttgcatgccacacgtgcaactgcaaaagagaggcaaaagaacttggagaaa
agcataagagaggaggcacgtcgtttgaaagacgagagtggtgttgatggggaatgggga
cgaagggggcttgtggatagagatgccgatggtggttgggtgaagggtcagcggcagttg
cttgatcttgacagcctttcatttcaccaaggtggtctcttgatggcaaacaaaaagtgc
gagcttcctctggggtcttaccggaaccataggaagggatatgaagaagttcatgtccca
gctttaaagccaaaaccacttgatcctggtgaagagcttataaagatatctgatatgcca
gactgggcacagccagctttcaaaggaatgacccagttgaatagggttcagagtaaagtt
tatgaaacagccctttttacagctgagaatgtactgctatgcgccccaactggggcaggg
aagacgaatgttgcaatgctaaccatacttcagcagattgcattgcacagaaatgaagat
gggtctttcgaccgtagcaattacaagattgtctatgtggcaccaatgaaggcacttgtt
gctgaagtggttggtaatctgtctaaccgtcttcagcattatgatatcaaggtgaaagag
ctgagtggtgatcagtcccttacccgccaacaaatagaagaaacccagatcattgtcaca
actccagaaaagtgggatattataaccagaaaatcaggagatcgcacctatacacagctt
gtgaaactgctaattgttgatgagattcatcttctgcatgataacagaggtccagttctt
gaaagtattgttgcaagaactgtgaggcaaattgaaaccacaaaagagcatattcgattg
gttggcttatctgctaccctacctaactatgaggatgtagccttgtttttacgtgttgat
ctgaataaaggacttttccattttgataatagttacaggccttgtccccttgcccaacag
tatattggaatcacagtgaagaagccactgcagagattccaattaatgaatgatgtttgt
tatgagaaggttattgatatagcaggaaaacaccaggttcttatctttgtccactcaagg
aaagagacagcaaaaacagcccgtgcaataagagatactgcacttgctaatgacactctt
ggcagattcttgaaagaagatagtgtgagccgagaaatactacatagccatactgaactg
gtaaaaagtaatgatcttaaagatctattgccatatggctttgcaattcatcatgcaggg
atggctagggctgaccgccagctggttgaggatctctttgctgatggacatgtgcaagtg
cttgtttccacagcaactcttgcttggggtgtcaatttacctgctcatactgtcatcatc
aaaggcacccagatttacaatcctgaaaagggggcatggactgaattgagtcccctggat
gttatgcagatgctggggcgtgctgggaggcctcaatatgattcttatggggaaggaata
attataactggtcatagtgaactgcaatattacctttctttgatgaaccaacaacttcct
attgagagccagttcatatcgaagttggcagatcagttaaatgcggaaattgtccttgga
actgtgcaaaatgctagagaagcattgagttggctcggttatacttatttgtatattcgg
atgctgcggaatcctactctgtatggtttggcacctgatgcgttggcgacggacataact
ttggaggagcggagagctgatctgattcattcggcagcaataatattggataagaacaac
ctagtcaagtatgacaggaaaagtggttattttcaaattactgacctgggtcgcatagcc
agttactactatattactcatggaacaatatccacatataacgagcatttgaagcctaca
atgggagatattgaactctgtcgattgttctctctcagtgaagaattcaagtatgtaaca
gtgagacaagatgagaagatggaactggcaaagcttttagatcgtgtccccattcccatc
aaggaaagtctagaagagcctagtgctaagattaatgtattgctacaagcctatatttca
cagctaaaacttgaagggttgtctctaacgtctgacatggtcttcataactcagagtgct
ggacggcttatgcgggcactttttgagattgtactgaaaagaggatgggcacaattagct
gagaaggcattaaatttgtgcaaaatggttagcaagaggatgtggagtgttcaaacacca
cttcggcaatttcatgggataccaaatgaaattttaatgaagttggagaagaaagatatt
gcttgggataggtattatgatctctcttctcaggagttaggagagctcatccgtttcccg
aagatggggagaacccttcataaattcattcaccaattcccaaaacttaacctggcagct
catgttcaaccaattactcgcactgtcttgaaggttgagctgacaattacaccagacttt
cagtgggaggacaaggttcatgggtttgtggagccattttgggttattgtggaggataat
gacggggagtatattcttcaccatgaatatttcttgatgaagaagcagtatattgatgag
gatcacactttgagtttcacagtctctatctatgaacctcttcctcctcagtattttatt
cgtgttgtgtctgacagatggcttggatcacagtctgttttgcctgtttctttcaggcac
cttattctgccagagaaatacccaccaccaactgaattattggacttgcaaccattgcct
gtgactgcattaagaaatccatcatatgaatctctctatcaggaatttaaacatttcaac
cctgtccaaacacaggttttcactgtcttgtacaacacagatgacaatgtcttggttgca
gcaccaactgggagtggaaagacaatatgtgcagagtttgctatattgagaaatcatcag
aagggacctgaggctatcatgcgtgctgtatatatagctcctattgaagctcttgctaag
gagcgttacaatgattggaagaagaaatttggggagggtctagggatgagagttgttgaa
ttaactggggaaacagcaatggacctaaaactgcttgagaaaggtcaacttatagtgagc
actcctgagaagtgggatgccttatcccgccgctggaaacagcggaaacatgttcagcag
gttagtcttttcattgttgatgaacttcatttgattggtggtcaaggaggccctatcttg
gaggtcatagtgtctaggatgaggtacattgcgagccaagttgagaataggatccgtatt
gtggcactctctacttcccttgcaaatgcaaaggatcttggtgaatggattggggctacg
tctcatggtcttttcaatttccctccaggtgtccgtcctgtgcccctggaaatacacatt
cagggaattgatatagctaattttgaagcaaggatgcaagcaatgtcgaagccaacatat
actgcaattgttcaacatgccaagaatgggaaaccagccattgtgtttgttcctacaagg
aagcatgcacgacttgctgcggttgatctgatgacatattcaagtgcggacagtggagaa
aagccaatgttcttgttacaatctgcagaaaacctggaaccattcatttccaggataaag
gaaccaatgctgagagagacactgcaatatggtgtgggctatttgcacgagggtcttgct
actacagaccaagatattgtgaaaactctctttgaaactggatggatccaagtatgtgta
atgagcagttcaatgtgttggggagtgccattgtcagcgcacctggtggtggttatggga
acacaatattatgatgggcgggaaaattcccatactgattacccggtgactgatctgttg
cagatgatgggccatgctagccgacctcttgttgataattctgggaagtgtgtgatcttt
tgccacgcaccacgtaaggaatactataagaagtttttgtatgaagccttccctgtcgag
agtcatttgcaacatttcttgcatgataatttgaatgcagaggtggtggttggagtcatt
gagaacaagcaagatgctgtggactatctcacatggacgttcatgtataggaggcttact
cagaatccgaactactacaatcttcagggtgtcagccacaggcatctctcagaccacctt
tcagagcttgttgaaggcacactgagtgatctggaagcaagcaaatgtgttgccattgag
gaagatgttgagctctctcccttgaaccttggcatgatagcgtcatactactacatcagt
tacacgacaatagaacgtttcagctcgtccttgacgtccaaaacaaaaatgaagggcctt
ctggagattttggcctctgcttcagagtacgcactactgccaattcgtcctggagaagaa
gagttgatccggaggttgattaatcaccagaggttttcctttgagaatccgaaatgcacg
gacccacatgtgaaggctaatgcactgttgcaagcccatttctcaaggcaagtgctgggt
ggcaatctcgcctctgatcagcgcgaagtgctactttctgccagtaggcttcttcaagca
atggttgatgtcatttccagcaatgggtggcttaacctagcacttcaggcgatggagctg
agccaaatggtgacacagggcatgtgggagcgagattccatgcttctacagcttccacac
ttcaccaaagagttggcgaagaaatgccaggagaaccctgggaagagcatagagactgtg
tttgatctagttgaaatggaggatgatgaaaggcgagaactgctgcaaatctcagatatc
cagttgatggacattgctcggttttgcaaccgtttcccaaatattgatctgtcatacgat
gtggttgatggtgacaatgtgggagccggggaggatgtcagtttgcaggttaccctcgaa
agggatctcgagggcaggacagaggttggacctgttgatgccctcaggtaccccaaggca
aaggaagagggatggtggcttgtggtcggcgataccaaaacgaaccagttgcttgctata
aaaagagtgtccttgcagaggaaagccaaagtgaagctggattttgctgctcctggagaa
gccggcaagaggacgtataccctgtatttcatgtgcgattcttatctgggctgtgatcag
gaatatagtttctctgttaatgtcaaagaagcaggtgctatcgacgatgacagtggaaga
gaatga
DBGET
integrated database retrieval system
