Diospyros lotus (date-plum): 127813907
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Entry
127813907 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127813907 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127813907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127813907
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127813907
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127813907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
127813907
NCBI-ProteinID:
XP_052210991
LinkDB
All DBs
Position
12:35228322..35280544
Genome browser
AA seq
2470 aa
AA seq
DB search
MPSAHQTLAVSFRQSQIFQNLSQCSSASFHSVSRTRTLAIALRMFAMLPFSSALSAHIRY
CLQGLNESNSDAVFQELSQFAEYGTQGSILLLRTCLDHLNIHGKDTQNMQLEPIFGLIFK
HLLDKPNFCTVLCESLRSEVINEDFLENISNALRFSASEKIGIGLALSDSDDPEIRMCGK
NFCMAQIGKLFASHKSVDSAEQIHNIFMFIHQSEGLSQHVDSFMEMLSLVQLKESDQFIL
APLLSDELCETTFLRWNMDFFDEGNEHDFGAVLAEMEKEMSIADIIKELGYGCTSSVSQC
KEMLSLFLPLTEITISRILGTVARTHMGLEDNHNAFSTFCSALGTGNLADLPLLSSWNID
VLIDSIEQLAPGTNWTCVIENLDHEGFNLPNEAAFLFLMSVFRHACQDPFPLHAICGSVW
KNSEGQLSFLKHAVSVPPEVFTFAHSGRQLAYADSVHGHKFQVGQPNHAWLCLDLLEVLC
MLAERGHASAVRSILKHPLEQHPEVLLLGMAHVNTAYNLIQHEVCLTVFPVILKSNMESG
MILHLWHVNPNLLLRAILDAYNSDPDNINRVLDVCQEIKILSLVLDMVPSHFGIRLAALA
SRKEFVDLEKWLSSNLSIYKDIFFEECLKFLKEIQYGRSQEVSADHFSNSSTLQNLYSDT
SPTFLKVLQAHADLIISSQLSEEMEKLHVTLMHTTSRMNTSGPTDSLPSDGYMDDIEAEA
NSYFHKMFDGILPIETMIQMLARFRESPEKREQSMFDCMIGNLFEEYKFFPKYPERQLKI
AAVLFGSLIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFLDRLIEWPQYC
NHILQISHLRGSHPELVAFIERALARISSGHSETDGVPISSADQQHGSDQVTATNVEIPG
SLFPPSGSVGSQPGSQISSSVQLQQRLQVRLDDSQKVSMTSSSYMKPLASSAVQPSIVLP
SDTSSTQKSQSASIASAALSSSTGFTRPSRAITSARFGSALNIETLVAAAERRETPLEAP
ASEVQDKISFIINNLSAANIEAKGKELTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLK
FLDKINSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKSTIGRNQVLR
AREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIYAMP
NLKMNLKFDIEVLFKNLGVDLKEVAPTSLLKDRVRQVEGNPDFSNKDVGASQQQILGEVK
SGAISTLNQVDLPLEVANPSHPSGHSHILSQYAAPLHLSSGTLTEDEKLAALGLSDQLPS
AQGLLQRQSPFSVSQLPTAASNIEQQVIVNPKLHALGLYLHFQSVVPIAMDRAIKEIVSG
IVQRSVSIATQTTKELVLKDYAMEIDETRIRNAAHLMVASLAGSLAHVTCKEPLRGSISS
QLRNSLQGLNITSELLEQAVQLVTNDNLDLGCALIEQAATEKAIQTIDGEIAQQLSIRRK
HRDGVGPAYFDSGLYTQGHAGMLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSSHSSNA
LPIGPSASAVSAGMSRVYSSASGQPNPGIYSSSLGNTGMAAVAQDLVSEEIETSSSQLLG
ASSTHIGATDGVNPHDFENDATVTSFPSASAPQLHSAETTTIESGAPLQPIPSTSTTERV
GSSSSEPLLTTGDALEKYQIISEKLETLVTSDAKDADIQGIIGEVPGIILRCISRDEAAL
AVAQKVFKGLYENASNSAHVSAHLAILAAIRDVSKLVVKELTSWVIYSDEDRKFNKDITV
GLIHSELLNLAEYNVHISKQLDSGRNKAATEFSINLIQTLLINDSRVISELHNVIDALAK
LAARPGSPESLQQLVEVARNPAATSSTLSAVSVGKEDSARQTREKKAPGHAAISREEYVV
MESAEPDPAGFREQVSGLFADWYRLCELPSANDAAYAHFVLQLQQHGLLKGDDMTDRFFR
CLTELSVSHCLSSEVINSGPLQSAQQLQPLSFLAIDIYAKLVFLILKFFPVDQGSSKLIL
LPKVLAVTVRFIQKDQEERKASFNPRPYFRLFINWLLDLCSTDPVFDGGNFQILTALANA
FHALQPLKVPGFSFAWLELVSHRSFMPKLLTGNAQKGWPYMQRLLVDLFQFLEPFLRNAE
LGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLP
DPSTPNLKIDLLAEINQSPRILSEVEASLKAKQIKGDIDEYLKTRQQGSSFLTELKQKLL
LPPSEAAWAGTRYNVPLINSLVLYVGMQAIQQLQARSPHAQSMASSVPLAAFLVGAALDI
FQTLIMELDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKNPRYNFWSRTFTRCAPEIEKLFESVARSCGGPKPGDDSV
VSGGMSDNMH
NT seq
7413 nt
NT seq
+upstream
nt +downstream
nt
atgccatcggcccaccaaaccctcgcagtttcgttccgtcaatctcaaatcttccaaaat
ctgtcacagtgttcttcagcttcgttccatagtgtctctcgaactcgaaccctagcaatt
gctcttcgcatgttcgccatgcttcctttctcgtcggccctctcggcccatattcgctac
tgtctccagggcttgaacgagtcgaactccgacgctgtctttcaagagctctctcagttt
gctgaatatggaactcagggaagcatattgctccttcgaacctgcttggatcacctgaat
attcatgggaaggacacacagaacatgcaattggaacccatatttggtttaattttcaaa
catctcttggataaacctaatttctgtacagtgctttgtgagtcattaagaagtgaagtg
atcaacgaagatttccttgaaaatatttctaatgctttacgcttctcagcatctgagaaa
ataggaattggtcttgccttgtctgattcagatgatcctgaaatcagaatgtgtgggaaa
aacttctgcatggctcagattgggaaactatttgctagtcataagagtgttgactctgct
gagcaaattcataatatttttatgtttattcatcaatccgagggcctttcccagcatgta
gattcgtttatggagatgctatctttagtgcaattgaaagagagtgaccaatttatttta
gctccattgctttcagatgaactatgtgaaacaaccttcttgaggtggaacatggatttt
tttgatgaaggcaatgagcatgattttggtgctgttctagcagaaatggagaaggaaatg
agcatagctgatataattaaggaattgggttatgggtgcacaagtagtgtttcccagtgc
aaagaaatgttgtctcttttcttaccgctgactgaaatcactatttctaggatactgggc
actgtggctcgcacccacatgggacttgaggacaatcataatgccttctcaactttttgt
tctgcccttggcactggaaatttggctgatctaccattgttgagttcatggaatatcgat
gtccttattgattcaattgagcagcttgctcctggaaccaactggacatgtgttattgaa
aaccttgatcatgagggattcaacctacctaatgaagcagcttttttattcttgatgtca
gtatttagacatgcttgccaggatccattcccactccatgccatttgtgggtctgtttgg
aaaaattctgagggccagctatctttccttaagcatgctgtttcagtaccacctgaagtg
tttaccttcgcacattcagggaggcaactggcatatgcggattctgtgcatggtcataaa
tttcaagttggacaaccaaaccatgcgtggttatgtcttgaccttttggaggtgttgtgt
atgctggctgagagaggtcatgcaagtgctgttcggtcaattcttaagcatcctctcgag
cagcaccctgaagtcttgcttcttgggatggcccatgtcaatactgcttataaccttatc
cagcatgaagtgtgtttgactgttttccccgtgatacttaaaagtaacatggagagtggt
atgattcttcatctctggcatgtgaaccccaatcttttgcttagggcaattttggatgct
tacaacagtgatccagacaatatcaatagagttttggatgtctgccaggagataaagata
ctctccctagtactggatatggttccttcacattttggtattagactggctgcacttgct
tctcggaaagaatttgtagatctggagaagtggttgagctctaatttgagtatttataaa
gatattttctttgaggagtgcctcaaattcctgaaggagattcagtatggcagatctcag
gaagtttctgctgatcatttcagcaattcttccactcttcagaacctttattcagataca
agtcctacattcttgaaggtccttcaagcacatgctgacttgattatctctagccagctt
tcagaggaaatggagaagttgcatgtaacattaatgcatactacttcaagaatgaatact
tctgggcctactgactcattgccttctgatggttacatggatgacattgaggcagaagca
aactcttacttccataaaatgtttgatggtatactaccaattgagacaatgattcaaatg
cttgctcgattcagagaatctcctgagaaaagggaacaatcaatgtttgattgcatgatt
ggcaatctttttgaagaatacaaattttttcccaagtaccctgagaggcagctcaaaatt
gcagcggttctgtttggctctctgatcaagcatcagcttgtcactcatctcacacttggt
attgcccttcgaggtgttttggatgccttgcgtaaacctgcagattccaaaatgtttgtt
tttgggacgaaggctctggaacagtttttggaccgtttgattgagtggcctcagtattgc
aatcatatcctacaaatatctcatttacgtggttctcatcctgagcttgttgcattcatt
gagcgggcacttgctaggatttcatcaggtcattcggagacagatggagtacctatttcc
tctgctgatcaacagcatggttccgatcaggttactgcaacgaatgtggagatccctggg
tcattgttcccaccaagtggatctgttggcagtcagcctggatcacaaatttcttcttca
gtccagcttcaacagagactccaagtccgtttagatgatagtcagaaagtctccatgaca
tcatctagctacatgaagcctcttgcatcttcagcagtgcagccttcaatagttctccca
agtgacacctctagcacacaaaagtcgcaaagtgcttcaattgcttcagctgcactatcc
tcctccactggttttactcgtccatctcgagcaattacctcagcaaggtttggctctgct
ttaaatattgaaacacttgtcgctgctgcggagagaagagaaacacccttggaggctcca
gcatcagaggttcaggataagatatcatttattattaataatttatctgctgcaaacatt
gaagctaaaggaaaagaacttactgaaattttgaaagagcagtattatccatggtttgct
caatacatggtaatgaaaagagcaagcattgagccaaattttcatgatctgtacttgaaa
ttcctagacaaaattaactcgaaggctttaaataaagagattgtacaagctacatacgag
aattgcaaggttcttctaggttcagaacttataaaatcaagttcggaagagcgttccttg
ctgaagaatctgggaagctggctagggaaaagcacaattgggagaaatcaggttttgagg
gcacgggagattgatcccaagtctttgatcatagaggcatatgagaagggtttgatgatt
gcagtaatcccattcacctccaagattctggaaccctgccaaagcagtctagcttatcaa
cctcctaatccttggaccatgggtattctgggattacttgctgaaatttatgcaatgcca
aatttaaaaatgaacctcaagtttgacattgaggtcctatttaagaaccttggtgttgat
ctgaaagaagtggctccgacttctcttctcaaggacagggtgaggcaagttgaagggaat
cccgacttctctaacaaggacgttggagcatcgcagcagcaaatactaggtgaagttaag
tctggtgcaatatctacactaaatcaagttgatctaccacttgaggttgccaacccatct
catcctagcggacattctcatattttatcacagtatgctgctcctctgcatctttcttct
ggtacattgacggaggatgaaaagctggcagctttaggcttgtctgatcagcttccttct
gctcaaggattactgcaacgccaatctccattctctgttagtcagcttccaacagctgca
tctaatattgaacaacaagtaattgtgaacccaaagcttcatgcccttggcctgtacctg
catttccagagtgttgttccaattgcaatggacagagctatcaaggagatagtgtctggt
attgtgcagcgcagtgtctccatagcaactcagacaacaaaggaactcgttctaaaggat
tatgccatggagatagatgagacgcgcatacgcaatgctgcacacttaatggttgctagt
ttggctggaagtttagctcatgtaacatgcaaggaacctctacgtggttcaatatcaagt
caacttaggaactcacttcagggtctaaatatcactagtgagcttcttgaacaagctgtg
caacttgttactaatgataatcttgatttgggctgtgcactgattgaacaagctgcgaca
gagaaggcaatacaaaccattgatggggaaatagctcaacaactttctataagaagaaaa
cacagagatggtgttggccctgcctattttgattcaggattgtacacacaaggtcatgcg
ggtatgttgccagaagcccttcgtcctaaacctgggcgcttatcccattcccaacaacga
gtttatgaggattttgttcggttaccctggcagaatcagtcaagccatagctcaaatgca
ctgccaattggtccttcagcttcagctgtcagtgctggtatgtccagggtgtatagttca
gcatcaggacagccaaacccaggcatttactcatccagcctaggaaacacgggaatggct
gccgtggcgcaggatcttgtgtctgaagagattgaaactagttcatctcagcttctaggt
gcttcctcaacccatattggggcaactgatggagttaatcctcatgattttgaaaatgat
gccactgtcacttcatttccttcagcttcagctcctcaattacattctgcggaaactaca
accattgaatctggggctccattgcagccaataccttcaacgtcaaccacggaacgtgtg
ggaagtagtagttcagaacctctcttgaccacgggtgatgcgctggagaagtaccagatt
atttctgagaagcttgaaactctggtaaccagtgatgctaaagatgctgatattcagggt
atcattggtgaagttcctggaatcattctcagatgcattagtcgagatgaagctgcattg
gctgtggctcaaaaggttttcaagggtctgtatgaaaatgcatcaaatagtgcacatgtc
agtgctcatcttgctattctggctgcaattcgcgatgttagcaagcttgttgttaaggag
ctgactagttgggtgatttattctgatgaggatcggaagttcaacaaggatattactgtt
ggtcttattcacagtgaattactaaaccttgcagagtacaatgttcatatttctaagcag
cttgattcaggaaggaataaggctgcgacagagttttccattaaccttattcagacattg
ttgattaatgattctagagtgatttctgaacttcataatgtcatcgatgcattggcaaag
cttgcggcaaggcctggatctcccgagtcattacaacagctggttgaggttgccaggaat
cctgctgccactagttctactctgtctgctgtttctgtgggaaaggaggatagtgccaga
caaactagggagaaaaaggcacctggccacgctgcaataagcagggaagaatatgttgtt
atggagtcagcagaaccagatcctgctggtttccgtgagcaggtttctgggctgtttgca
gattggtacaggttatgtgagcttccaagtgcaaatgatgctgcttatgctcactttgtc
ttacaattgcagcaacatggattgctgaaaggggatgatatgacagatcgttttttccga
tgccttacggaactttctgtgtcacattgcctatcttctgaggtgattaattctggccct
ctgcaatcagctcaacaactccagcccctttccttccttgcaattgatatttatgcaaaa
cttgtctttttgatcctaaagttcttccctgtggaccaaggatcgagcaaactcattctt
ctgcccaaggttttggctgtaactgtgcgatttattcagaaagatcaagaggagaggaaa
gcttcctttaatccaaggccatattttaggttgttcattaactggctgctggacctgtgc
tccacagacccagtgtttgatggtgggaactttcagattttgacagcattggcaaatgca
ttccatgctctacagccccttaaagttcctggattcagctttgcatggcttgaactggtg
agtcacaggagtttcatgccaaaattgctcactggtaatgctcaaaaggggtggccatat
atgcagcgattgctggtggatttatttcagttcctggagccatttttgaggaatgcggag
cttggagaaccggttcattttctgtataagggcacattaagggtgttgctagttctactt
catgatttccccgagttcctctgcgactatcattttagcttctgtgatgtcataccacca
agctgcatacagatgcgaaacataatcctcagtgcatttcctcgtaatatgaggcttcct
gacccatcaactccaaatctgaagattgatcttcttgcagagatcaaccaatctccacgt
attctctccgaggttgaagcttctcttaaagcaaagcagataaagggtgatatagatgag
tatttgaagacaaggcaacagggatcttcgtttctaactgaactcaaacagaaactgctg
cttccaccaagtgaagctgcgtgggctgggacccggtataatgtacccttgatcaactcc
cttgtgctttatgttggaatgcaggctatacagcagctgcaggccagaagtcctcatgcg
caatctatggccagtagtgtcccattagctgcgttcttagttggcgctgccttggatatc
ttccagacattgattatggagctagatactgaggggcgctacctctttctgaatgcagtt
gcaaaccaactacgctatccaaacacccatacacactacttctcattcatacttctttat
ctttttgctgaatcaaaccaggaaatcattcaggagcagatcacaagagttcttctggag
cgcctgatcgtcaaccgacctcatccatggggccttctgattactttcattgagctaatt
aagaatcctaggtacaacttctggagccggacttttacaaggtgtgcgccggagattgag
aaactctttgaatcagttgctagatcatgcgggggcccaaagccaggggatgacagtgtg
gtctctggtggcatgtctgacaatatgcactaa
DBGET
integrated database retrieval system
