Solidesulfovibrio magneticus: DMR_31160
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Entry
DMR_31160 CDS
T00917
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dma
Solidesulfovibrio magneticus
Pathway
dma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DMR_31160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dma03021
]
DMR_31160 (rpoB)
03400 DNA repair and recombination proteins [BR:
dma03400
]
DMR_31160 (rpoB)
Enzymes [BR:
dma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DMR_31160 (rpoB)
Transcription machinery [BR:
dma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DMR_31160 (rpoB)
DNA repair and recombination proteins [BR:
dma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DMR_31160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BAH76607
UniProt:
C4XIN9
LinkDB
All DBs
Position
complement(3529895..3534004)
Genome browser
AA seq
1369 aa
AA seq
DB search
MAQLTKNFGKIVKTLTIPHLLNLQIDSYELFLQKDIPPTSREDAGLEGVFRSVFPIEDFN
RTASLEYVSYEIGEPKYDVPECIAKGLTFEAPLRIKVRLVVYDVDEETENRTIRDIKEQI
IYFGTVPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKSHTSRKVLYSCRIIPMRG
SWLDFDYDHKDILYVRIDRRRKMPATILFKAMGMSRADILRYFYEVEHFTFEPHHVFRQV
LPDFYRKEKAYSEIRDSEGKVIVAVDKPITKRAWRLMLEAGIEKVEVDPATLLGLFLAED
LADPATGEVMAEAGDELNADLIEKLKDAGIVELSLLHTRGVDTSSSIRDTLALDKTIDTI
TAQVEIYRRLRPSSPPTPEIAANFFENLFRNPDYYDLSPVGRYKINARLKVDQPLDFRTL
ANDDILKAVKHLTFLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS
LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTHSKVNDFGFIETPYKVVKDGQLT
GETIYLDATREIDEVIAGANAPLDENKAFINSMVGARIRGDQVVIPREQVTLMDISPSQI
VSVSAALIPFLEHDDANRALMGSNMQRQAVPLLRCEQPLVGTGMEGAVAKDSGSCILAEG
EGFVHYADAERIIVCYDDPAVGTDTGSAKTYELLKHHKSNQNTCFGQVPRVLVGQRVVKG
DVLADGPGIRDGELALGKNLLVAFMPWCGYNYEDSILISENAVKDDTFTSVHIEEFEVVA
RDTKLGPEEITRDIPNVGEEMLKDLDDCGIIRIGARVAPDDILVGKITPKGETQLTPEEK
LLRAIFGDKARDVKNTSLKVPPGIEGTVIDVRVFNRRSGEKDDRTRQIEDFELARLDTKE
GQHAAAIAANVRRRLWPVVSGKTVFQTIKGVKKGEVLLEANHPMTQEVLEALPVKKLSGL
FTSKETNEAVAEVLDEYDRHIQFIKGLYDQKREKTTEGDDLPPGVIKMVKVYVAVKRKLN
VGDKMAGRHGNKGVVSCILPIEDMPFFSHGRPVDIVLNPLGVPSRMNIGQILETHLGWAG
MELGRQLAEMVDSGKAMEGVRDRAKAVFDTEETTALIDGMSDDDLRDALRALKNGIVAKT
PVFDGATEDELWSWLKLAGLPEDGKVTLYDGRTGEAFHRPVTVGCMYILKLHHLVDEKIH
ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVGGRVKM
YEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVDLIQDEKKIAKAPPRR
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgaccaaaaatttcggcaagatcgtcaaaacgctgaccattccccatctg
ctcaatctgcagatcgactcctacgagctgtttctgcaaaaagatattcctcccaccagc
cgggaggacgcgggacttgaaggcgtcttccgttcggtctttcccatcgaggacttcaat
cgcaccgcctcgctggaatacgtcagctacgaaatcggcgaaccgaaatacgacgtgccc
gagtgtatcgccaaaggcctgaccttcgaggcgcccctgcgcatcaaggtccgcctggtc
gtgtacgacgtggatgaagagacggaaaaccgcaccatccgggacatcaaggaacagatc
atctatttcggtaccgtgccgcttatgaccgagaaaggcacgtttatcatcaacggcacc
gagcgcgtcatcgtcaaccagctccagcgctccccgggcatcatcttcgagcacgactcc
ggtaaaagccacaccagccgcaaggtcctctattcctgccgcatcatccccatgcgcggc
tcctggctcgacttcgactacgaccacaaggacatcctgtacgtgcgcatcgaccgccgc
cgcaagatgcccgccaccatcctgttcaaggccatgggcatgtcgcgcgccgacatcctg
cgctatttctacgaggtcgaacacttcaccttcgagccgcatcacgtcttccgccaggtc
cttcccgatttctaccgcaaggagaaggcctattccgagattcgcgacagcgagggcaag
gtcattgtcgctgtggacaagcccatcaccaaacgggcttggcggctcatgctcgaagcc
ggcatcgagaaggtcgaggtcgatccggccacgctgctggggctgttcctggccgaggac
ctggccgatccggccaccggcgaagtgatggccgaggccggagacgaactcaacgccgac
ctcatcgagaagctcaaggacgccggcatcgtcgagctctcgctgctgcacacccggggc
gtggacacctcgtcgtccattcgcgacacgttggccctcgacaagaccatcgacaccatc
acggcccaggtggaaatctaccgccgcctgcgtccgtcctcgccgccgactccggaaatc
gcggccaacttctttgagaacctgttccgcaatccggactactacgacctgtccccggtg
ggccgctacaagatcaatgcgcgcctcaaggtggatcagccgctggatttccgcaccctg
gccaacgacgacatcctcaaggccgtcaagcacctgacattcctcaaggattcccacggt
ccggccgacgacatcgaccacctgggcaaccgccgggtgcgtcccgtgggcgagctggtc
gagaaccagtaccgcatcgggcttgtgcgcatggagcgtgccatcaaggagcgcatgagc
cttcaggaagtggccaccctcatgccccacgacctcatcaaccccaagcccgtggccgcg
gtcctcaaggaattcttcggcacctcccagctgtcgcagttcatggaccagaccaacccg
ctctcggaagtcacccacaagcgccgcctgtcggcccttggaccgggcggcctcacccgc
gagcgcgccggcttcgaggtccgcgacgtccacacctcgcactacggccgcatctgcccc
atcgaaacgccggaaggcccgaacatcggtcttatcgtgtccttgaccacccactccaag
gtcaacgacttcggcttcatcgagacgccctataaggtcgtcaaggacggccagctcacc
ggcgagaccatctacctcgacgccacccgcgaaatcgacgaggtcatcgccggcgccaac
gcgcccctggacgagaacaaggccttcatcaactccatggtcggcgcgcgcattcgcggc
gaccaggtggtgatcccgcgcgagcaggtcaccttgatggatatttcgccgagccaaatc
gtgtccgtttcggccgcgctcatcccgttccttgaacacgacgacgccaaccgcgccctc
atgggttcgaacatgcagcgccaggccgtgccgcttttgcgctgcgagcagccgctggtc
ggcaccggcatggaaggcgcggtggccaaggattccggctcctgcatcctggccgagggc
gagggcttcgtccactacgccgacgccgagcgcatcatcgtgtgctacgacgatccggcc
gtgggcacggacaccggttcggccaagacctacgaactgctcaaacaccacaagtccaac
cagaacacttgcttcggccaggtgccgcgcgtgctggtcgggcagcgggtggtcaagggc
gacgtcctggccgacggcccgggcatccgcgacggcgaactggccctgggcaagaacctg
ctggtcgcgttcatgccctggtgcggctacaactacgaagactccatcctcatttccgaa
aatgcggtcaaggacgacaccttcacctcggtgcacatcgaggagttcgaggtcgtggcc
cgcgacaccaagctcggacctgaggaaatcacccgcgatattcccaacgtcggcgaggag
atgctcaaagacctcgacgactgcggcatcatccgcattggcgcccgtgtggccccggac
gacatcctggtcggcaagatcacgcccaagggcgagacccagctgacccccgaagaaaag
ctcctgcgggccatcttcggcgacaaggcccgggacgtcaaaaacacctcgctgaaggtt
ccgcccggaatcgagggcacggtcatcgacgtgcgcgtgttcaaccgccgctccggcgag
aaggacgaccgcacccgccagatcgaggacttcgagctggcccgcctggacaccaaggaa
ggccagcacgccgccgccatcgccgccaacgtgcgtcgccggctgtggccggtggtctcg
ggcaagaccgtgttccagaccataaagggcgtgaagaaaggcgaagtgcttctcgaagcc
aaccaccccatgacccaggaggtcctggaggcgctgccggtcaagaaattgtccgggctt
tttacctccaaggagaccaacgaggccgtggccgaggtgctggacgagtacgaccgccac
atccagttcatcaagggcctctacgaccagaagcgcgagaagaccaccgagggcgacgat
ctgccgcctggcgtcatcaagatggtcaaggtctacgtggcggtgaagcgcaagctcaac
gtcggcgataaaatggccggccgccacggcaacaagggcgtcgtgtcctgcatcctgccc
atcgaggacatgccctttttctcccacggccgtcccgtggacatcgtgctcaaccccctg
ggcgtgccttcgcgtatgaacatcggccagatcctcgaaacccacctgggctgggccggc
atggagcttggccgccagttggccgagatggtcgattccggcaaggccatggaaggcgtg
cgcgaccgggccaaggcggtcttcgacaccgaagagaccacggcccttatcgacggcatg
tccgacgacgacctgcgtgatgccctgcgcgcgctcaaaaacggcatcgtggccaagacc
ccggtctttgacggcgccaccgaagacgagctgtggagctggctcaagctggccggcctg
cccgaggacggcaaggtcaccctctacgacggccgcaccggcgaggctttccaccggccg
gtcaccgtggggtgcatgtacatcttaaagctccaccacttggtcgacgagaagatccac
gcccgttccactggcccgtactccctggtcacccagcagccgctgggcggcaaggcccag
ttcggcggccagcgtctgggtgaaatggaagtctgggccctggaagcctacggcgcgtcg
tacctcctgcaggagttcttgaccgtcaagtccgacgacgtcggcggccgcgtcaagatg
tacgagaagatcgtcaagggcgacaatttcctggaagccgggttgcccgagtccttcaac
gtcttggtcaaggaactcatgtccctgggcctcgacgtggacctcatccaggacgaaaaa
aagatcgctaaggctccgccgcggcgctag
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