Dehalococcoides mccartyi BTF08: btf_1548
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Entry
btf_1548 CDS
T02475
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dmc
Dehalococcoides mccartyi BTF08
Pathway
dmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
btf_1548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmc03019
]
btf_1548
Messenger RNA biogenesis [BR:
dmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
btf_1548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_NusA_2nd
KH_KhpA-B
KH_2
LapA_dom
BTBD16_C
DUF4407
Motif
Other DBs
NCBI-ProteinID:
AGG08610
LinkDB
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Position
1423377..1424960
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AA seq
527 aa
AA seq
DB search
MFEFFMETAPATTTGLPLSAILAIFFSFIIGIVFGGMALFVFRGFIMNRQLRIAQRKATK
MLADSKLEAKDVLVEAKREADKTRNSAETELKERRSELAKQENRVIQKTEALDRKLENLE
QREQSLTNREKSIDETQSQIEEIRENELKRLEEVANMTTEQAKTSLLEMLEGEMQQETSR
RLREWEIKIKAEADEKAREVVSQAIQRCASDVVTETTTNVVPLPSDEMKGRLIGREGRNI
RALEQATGVDLIIDDTPEAVTISSFDPVRREVARQALSKLIIDGRIHPARIEEVVTKAKE
EVEAAMIASGEQAAYQAGVHGLRPEIIKVMGRLKYRTSYGQNVLQHSIEVAQMSGMIGSE
LGVNVTLARRAGFLHDIGKAVDRDVEGTHTQIGADMVKQWEKSPEVIKGVAEHHFDTPTV
SIWGFIVSAADAISSARPGARRESLENYIKRLKALEEIADSFKGVEKSFAIQAGREVRIM
VKPDEIDDLGAMRLARDIVKRIEDGLEYPGQIKVTVIRETRSVDFAK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagttttttatggagacagcgccggctaccaccaccggtttgcctttgtctgct
attctggctatctttttcagttttattataggtatagtgttcggcggtatggcactattc
gtattcaggggcttcattatgaaccgccagcttcgtattgcccagcgtaaagctaccaaa
atgctggctgattccaaactggaagctaaggatgtgctggtggaagccaagcgcgaggct
gacaagactcgcaattccgccgaaactgaacttaaggaacgccgttctgaactggccaaa
caggaaaacagggttatccaaaaaacagaggcgctggaccgcaagctggaaaacctggaa
cagcgtgaacagtctttaaccaaccgggaaaaaagcattgacgaaacccaatctcaaatt
gaagaaatacgcgaaaatgaactaaaacgcctggaagaagtggccaacatgaccactgaa
caggccaaaacgagcctgcttgaaatgctggaaggcgaaatgcaacaggaaacctcccgc
cgcctgcgcgagtgggagataaaaataaaagccgaagcggatgaaaaagcccgcgaggtt
gtttcccaggctatccagcgttgtgcctctgacgtagttaccgaaaccaccactaatgtc
gtacccctgcccagtgacgaaatgaagggcaggctgattggccgcgaaggccgcaatata
cgggctttggaacaggcaaccggcgtagacctgataatagatgacaccccggaggcagtt
actatttccagttttgacccagtgcggcgtgaagttgcccgtcaggcactttcaaaactt
atcattgacgggcgtattcaccctgcccgcatagaagaagtggtaaccaaggccaaagag
gaagttgaagccgctatgatagcttccggtgaacaggctgcctaccaggcaggcgttcac
ggactgcgacccgaaataatcaaggtaatgggacggctgaaataccgcaccagttacggc
cagaatgtacttcagcacagcatagaagtagcccagatgtccggcatgataggcagtgag
ctgggtgtaaatgttacccttgcccgccgggccggctttttgcatgatataggcaaagcg
gttgaccgagacgtggaaggcacccatacccagataggcgcagacatggttaaacagtgg
gaaaaatctcccgaagttattaaaggtgtggcggaacatcactttgacacccccaccgtt
tccatctggggctttatagtatctgctgcagatgccatttcttcggccagacccggtgcc
cgccgcgaatcactggaaaactacatcaaacgtctgaaggctcttgaagagattgccgac
agcttcaaaggggttgaaaaatcctttgctatccaggcaggacgtgaagtgcggataatg
gtaaaacctgatgagattgatgatctgggagctatgcggctggccagagatatcgtcaag
aggattgaagatggtctggaataccccggacagattaaagttaccgttatacgggaaacc
agatccgtagactttgccaagtaa
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