Dehalococcoides mccartyi BTF08: btf_565
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Entry
btf_565 CDS
T02475
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dmc
Dehalococcoides mccartyi BTF08
Pathway
dmc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dmc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
btf_565 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmc03021
]
btf_565 (rpoB)
03400 DNA repair and recombination proteins [BR:
dmc03400
]
btf_565 (rpoB)
Enzymes [BR:
dmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
btf_565 (rpoB)
Transcription machinery [BR:
dmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
btf_565 (rpoB)
DNA repair and recombination proteins [BR:
dmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
btf_565 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGG07670
LinkDB
All DBs
Position
531137..534958
Genome browser
AA seq
1273 aa
AA seq
DB search
MVSMLPKADAATGVIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEEGLRELIEEISPIKDF
VGNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLFFGDI
PLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLIPSRGAWLEFETS
NRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIKD
EISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSREVGE
NRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVAR
ERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEITNKRRLSAMGPG
GLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYRKVYS
KLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDSFKIISKLPECDILVMPFVSAEVKY
MPADEEDRYIIAQANTRLDEKGYFLDDRIEARLAERYVVEPPDKIDYMDVSPKQIFSVAA
SLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAARYSGQVIFAKHAGVAS
SVTSEKIIIRTAEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIAAGQVLADSSATENG
ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEARDTKLGVEEITR
DIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKARE
VKDTSLRMPHGEWGKVINVRIFSRDSGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGN
KGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVATPV
FDGADDTVIEDALARSWLSAKAGAIDMSPENKRPSADAHKAIEWIKQQGFDGKKIFDEKH
PGLAKEVSLKLWLKDMGVDASALSGAELEKKAYDVSSQSRLPSPIVGKSVLRDGRTGETF
DQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAY
GTAHNLQEMLTIKSDDIAGRAKAYESIVKGEDVLQPGVPESFKVLVKELQSLGLAVEVIN
EEVKIAPSEKVSSLNEGNLPASDEISAEILPETLYANTEDISEDSMMSVIDADDQDLVVS
SNDEEVSENDERS
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggtatctatgttaccgaaggccgacgccgccactggtgtaatccgcaaatcttatgcc
caactacccgaggttgtcaatgtacctaacctgatagagatgcagttgcagtcttttgtc
tggtttcaagaggagggtctccgtgagctgattgaggagatttctcccatcaaagacttc
gtgggtaacaggctggagctggaattcataggctacgaattcagagagccccgtttatcc
gaatacgaatgcacccagcgtgaccagacctactctgtacccctgtacgtaaaggccagg
ttgattgtaaaaactaccggtgaaatcaaagaaccctttgatttgttctttggggatatt
ccccttatgaccgccttgggtacatttatcaccagcggtaccgaacgggtagtggtcagc
cagctgctgcgttcaccgggtgtctactttaccatttcagatgacccggcaaccggccgt
cccctctgccataccaaccttattcccagcaggggtgcttggcttgaatttgaaacttcc
aaccgtgatgttatttcagtaaagattgacggacgccgcaagattcccgtcagcaccctg
ttgcgtgccataggttattccgatgatctggatattttaaacctgtttgaggttattgat
aatgaccccgaacgccactatatccagtccagtattgaccgtgatcccctgataaaagat
gagattagtgcccttatcgatatttacagccgcttgcgtccaggtgatccgccaaacgcg
gataacgcccgcaagcttattaatgaaatgttctttgacccccagcactatgatctgggc
aaggtaggccgttacaaggttaaccgccgtctggaattgccttcccgtgaggttggtgaa
aaccgtgcccttacccgtgaagacatagtagccattatccagcggattatcatggtcaat
aacggccaggatactccggatgatattgaccatttgggcaaccgaagaatccgcactgta
ggtgaacttgttcaaaaccagttccgcatagggctggtgcgtttggaaagagttgcccgt
gaacggatgagcattgttaatctggaaatggttacacccagcgctctggttaatatccgc
cctgtggtttcagccgttaaggagttctttggcggttcacagctttcccagtttatggat
cagactaaccctctggctgaaataaccaataaacgccgtctgtctgccatgggccccggc
ggtctttcccgcgagagggccggctttgatgtgcgcgatgttcactactctcattacggg
cgtatctgccccattgagacacctgaaggcccgaacattggtcttatcggttctctggct
acctatagccggattaaccgctacggctttgtggagaccccttaccgcaaggtttattca
aaactgaaaaataatgataaaaaactggttggtcttaaactgaagactgaaatcagtgaa
aaaggcaaagtactggcggctgccggcagtacaatcagcgaagacagcttcaagattatt
tcaaagctgcctgagtgtgatattttggttatgccttttgtgtctgccgaagtcaaatat
atgcctgcagacgaagaagatcgctatataattgctcaggctaatacccgtttggacgag
aagggctatttccttgatgacaggattgaagcccgtttggctgaaagatatgtggtagag
cccccagataagattgattatatggatgtttcgcccaagcagatcttcagtgtagcggct
tcgctcattcccttccttgagcatgatgatgctaaccgtgcccttatgggtgcgaatatg
caacgccaggctgtgcctttgcttcgggctgaggcacctatggtggctacaggtatggaa
cgtgaagcggccagatactccggtcaggtcatctttgccaaacatgccggtgtagccagt
tcggttaccagtgaaaaaataataatccgtaccgccgaaggcggacacgatgaatacctg
ctgaagaaatttgttcgtaccaatcagggtacctgcataaatcagcatgccattataaac
aaggggcagaagatagcagccgggcaggtactggctgacagctctgccactgaaaacggc
gaactggctttggggcaaaactgtgtggtggcctttatgagctggcagggtttcaactat
gaagatgccattatccttagtgaacggctggtacgtgaagatgcctttacctccattcac
attaccaagcacgaacttgaagctcgtgataccaaactgggtgttgaagaaataacccgt
gatattcctaacgtaggtgaagaaagcctgcgcgaattggatgaagacggtattatccgc
ataggggctgaagttggccctgacgatattctggttggtaaaatcacccccaagggtgaa
accgaactttcagctgaagaaaaattgcttagggctatcttcggcgaaaaagcccgcgaa
gttaaagacacttcactccgtatgcctcatggtgaatggggcaaggttataaatgtaagg
attttctcccgtgacagcggtgatgacctgcctgccagagttaataaatgggtacaggtc
tgggttgcccagaaacgcaaggtttcagtgggtgacaaactggccggccgccatggcaac
aagggtgttatatccataattgccccggtagaagatatgccttacctgcctgacggcact
ccggtggacgtggttttgaaccccatcggcgtaccttcacgcatgaacctggggcagatt
ctagaaactcatctgggctgggcagggcatctgctgggctttagggtggccacccccgta
tttgacggtgccgatgatactgtaattgaagacgctttggcccgttcttggctctctgcc
aaggccggtgcaatagatatgagccctgaaaacaaacgtcccagtgcagacgctcacaag
gctatagagtggataaaacagcagggctttgacggcaagaaaatatttgatgaaaagcac
cccggtctggccaaggaagtcagccttaagctttggcttaaggatatgggcgtagatgcc
tccgctttaagcggggctgaactggaaaagaaagcttacgacgtaagcagccaaagccgc
ctgccttcgcctattgtgggtaaatcagtgttgcgtgacggtcgtaccggcgaaaccttt
gaccagccggtaaccgtaggcaatatgtatatccttaaacttatccatctggtggaagac
aaggtacatgcccgtgctaccggtccttactcactcatcagccagcagcctctgggcggc
aaagcccagttcggcggccagcgcttcggtgaaatggaagtttgggctatgtacgcttac
ggtacggctcataaccttcaggaaatgctgactatcaagtcagacgatattgccggacgt
gccaaggcttatgaatccatagtaaagggtgaggatgtgctccagcccggtgtacccgaa
tccttcaaggtattggtaaaagaactgcagagcctggggctggcagttgaagtaataaat
gaagaagtcaaaattgctccatctgaaaaggtgtcctctttaaatgagggaaacttgccg
gcgagtgatgagatttctgccgaaatacttcctgaaactttgtatgccaatacagaggat
atcagtgaagattccatgatgtcggtaatagatgccgatgaccaggatttggtagtgtca
tcaaatgatgaagaggtatccgaaaacgatgaacgaagttaa
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integrated database retrieval system
