KEGG   PATHWAY: dme04136
Entry
dme04136                    Pathway                                
Name
Autophagy - other - Drosophila melanogaster (fruit fly)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
dme04136  Autophagy - other
dme04136

Other DBs
GO: 0006914
Organism
Drosophila melanogaster (fruit fly) [GN:dme]
Gene
Dmel_CG10861  Atg12; Autophagy-related 12 [KO:K08336]
Dmel_CG10967  Atg1; Autophagy-related 1, isoform B [KO:K08269] [EC:2.7.11.1]
Dmel_CG12334  Atg8b; Autophagy-related 8b, isoform B [KO:K08341]
Dmel_CG1241  Atg2; Autophagy-related 2, isoform B [KO:K17906]
Dmel_CG12821  Atg10; Autophagy-related 10, isoform B [KO:K17888]
Dmel_CG1643  Atg5; Autophagy-related 5 [KO:K08339]
Dmel_CG3004  Lst8; Lst8 [KO:K08266]
Dmel_CG31033  Atg16; Autophagy-related 16, isoform F [KO:K17890]
Dmel_CG31852  Tap42; Two A-associated protein of 42kDa [KO:K17606]
Dmel_CG32672  Atg8a; Autophagy-related 8a, isoform B [KO:K08341]
Dmel_CG3615  Atg9; Autophagy-related 9, isoform B [KO:K17907]
Dmel_CG4320  raptor; raptor, isoform C [KO:K07204]
Dmel_CG4428  Atg4a; Autophagy-related 4a, isoform B [KO:K08342] [EC:3.4.22.-]
Dmel_CG5092  mTor; mechanistic target of rapamycin, isoform A [KO:K07203] [EC:2.7.11.1]
Dmel_CG5373  Pi3K59F; phosphatidylinositol 3-kinase 59F [KO:K00914] [EC:2.7.1.137]
Dmel_CG5429  Atg6; Autophagy-related 6 [KO:K08334]
Dmel_CG5489  Atg7; Autophagy-related 7, isoform A [KO:K08337]
Dmel_CG6194  Atg4b; Autophagy-related 4b [KO:K08342] [EC:3.4.22.-]
Dmel_CG6877  Atg3; Autophagy-related 3 [KO:K08343]
Dmel_CG7053  Atg101; Autophagy-related 101 [KO:K19730]
Dmel_CG7109  mts; microtubule star, isoform B [KO:K04382] [EC:3.1.3.16]
Dmel_CG7331  Atg13; Autophagy-related 13 [KO:K08331]
Dmel_CG7986  Atg18a; Autophagy-related 18a, isoform D [KO:K17908]
Dmel_CG8678  Atg18b; Autophagy-related 18b, isoform B [KO:K17908]
Dmel_CG9746  Vps15; vacuolar protein sorting 15, isoform B [KO:K08333] [EC:2.7.11.1]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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