Dipodomys merriami (Merriam's kangaroo rat): 138806946
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Entry
138806946 CDS
T11079
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138806946 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138806946 (Cnot1)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138806946 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138806946 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
138806946
NCBI-ProteinID:
XP_069848530
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFGFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPTVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccaacaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgttgatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacacagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcacctcacctgtttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagttcagat
ctccgaggttttgctgcccaatttattaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctttttgggcagaagggagcatttggagttggacag
gaacagatagacgcttttcttaagactctgcgcagagattttccccaagaacgctgtcct
gtggtgcttgcaccacttttatatcctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagttctttggctgatttcatgcaa
gaagtaggctacggtttttgtgcaagtattgaagaatgtcggaatataatcatgcagttc
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagtatctctgctcctggcagtggaatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaacgtggaagtc
ttgattgatgttcttaaggaactgaacccgagtttgaatttcaaggaggtaacttacgaa
ctagatcatcctggatttcagattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtgttccctgtagacttcatatatagaccttggaaa
catgcagaaggccagctctcctttattcaacattccctcataaatccagagatcttctgt
tttgctgactatccctgtcacactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacttggaagagcttggatttgattgaatctctgcttaggctt
gcagaagttgggcagtatgaacaagtcaaacaactctttggctttcctatcaaacactgt
ccagacatgctggtattggccttactccaaatcaacacttcttggcacactctacgtcat
gaactcatctccactctgatgccaatattccttggaaaccatcctaattctgccattatt
ttgcactatgcatggcatgggcagggccaatctccatcaatacgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggagcaatatgaccaggccaaattgtctcgaata
cttgatgtggcccaagacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaaatgg
ctcacagataaaataagagagcatggggagccttttattcaagcatgcatgactttctta
aagagaagatgtccttctattttgggtggacttgccccagagaaagaccagcctaagagt
gctcaacttcctcctgaaactctggcgacaatgttggcttgtctacaggcttgtgcgggg
agtgtttctcaggagttatcagagaccatcctcaccatggtagccaattgtagtaatgtt
atgaataaggccagacagccaccacctggagttatgccaaaaggacgacctcctagtgct
agtagcttagatgccatttctcctgttcagattgacccccttgctggaatggcatctctt
agtataggtggttcagctgctcctcacacccagagcatgcagggctttcctccaaatttg
ggttctgcattcagtacccctcaatcaccagcaaaagcatttccacctctttcaacccca
aatcaaacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcttgactggtataggaactggggctcttggacttcctacagtgaat
aatgatcccttcgtacagagaaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttatctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaatagctattttcagcgaatatataatcatccacca
catccaaccatgtctgttgatgaagtattagaaatgctacagagatttaaagactcaact
ataaaaagggaacgagaagtatttaactgtatgctaaggaacttgtttgaagaatatcgg
ttttttccccagtaccctgataaagagttacatataacagcctgcctgtttggtggcata
atagaaaaaggactagtcacttacatggcactgggtctggccctgagatatgtccttgaa
gccttacggaaaccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgccagcacttggcttccatcagtcac
tttatgcagtttccgcatcatttgcaggagtatatcgagtacggacaacaatctagagat
ccacctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggctcaagcccaggttccagccaaagctcctcttgctggtcaggttaacactatggtg
accacctcaaccaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagacgtgccaccttccatcaatactacaaatatagatacgttgcttgtg
gccacagatcaaactgagagaattgtggagcccccagaaaatattcaggagaaaattgct
tttatcttcaataatctctcacagtcaaatatgacacagaaggttgaagaactaaaagaa
actgtgaaggaagaatttatgccttgggtttcacagtatctagttatgaagagagtcagt
attgagccaaactttcacagcctgtattcaaacttccttgatacactgaagaatcctgaa
tttaataagatggttctgaatgaaacctacagaaatatcaaagtgctcctgacctctgat
aaagctgcagccaatttttcagatcgttctttgctgaagaatttgggacattggctggga
atgatcacattagctaaaaataagcccatcttacatactgatttggatgtgaaatctttg
ctgctagaggcttatgttaaaggacagcaagaattgctatatgtagtgccctttgttgcc
aaagtcttagagtccagcattcgtagtgtggtttttaggccaccaaacccctggacaatg
gccattatgaatgtattggcagagctacaccaggaacatgacttaaagttaaacttgaag
tttgaaattgaggtgctctgcaagaaccttgcattagacatcaatgagctgaaacctgga
aacctattaaaagataaagatcgcctgaaaaatttagatgagcaactctctgctccaaag
aaagatgtcaagcagccagaagaactccctccaatcacaacaacaacaacttctacaaca
ccagctaccagcactacttgtacagccacagttccaccacagccacagtacagctaccat
gacatcaatgtctattcccttgcagggctggcaccacacattactctaaacccaacaatt
cccttgttccaggcccatccacagttgaaacagtgtgtgcgtcaagcaatcgaacgggct
gtccaggaactggttcatcctgtggtggatcggtcaattaagatcgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattcggaggaatctcgaatgcgaatagca
gcgcatcacatgatgcgtaacttgaccgctgggatggctatgattacttgcagggaacct
ttgctgatgagcatatctacaaacctaaaaaacagttttgcctcagctcttcgtactgca
tccccacaacaaagagaaatgatggaccaagcagccgctcaattagctcaggacaattgt
gaattagcttgttgttttattcagaagactgcagtagaaaaagcaggcccagagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgaagatac
tgtgatcctgttgtattaacataccaagctgagcggatgccagaacagatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagttcgcacgaaatgtgcct
ggcttcttgcctacaaatgacctaagtcagcctacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcaaatttatgataagtgcattacagaactggag
cagcacttacatgctataccaccaactttggctatgaatcctcaagcccaggctcttcga
agtcttttggaagttgtagtgttatcacggaactctcgggatgctatagctgctcttgga
ttactccagaaggctgttgagggcttattagatgccacaagtggtgctgatgctgaccta
ctgctgcgttaccgagagtgccacctgttggtactcaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatacaatgtggaggcagtggagttgttaatacgaaatcatttggtaaacatgcaa
cagtatgaccttcacctagctcagtcaatggagaatggtctaaactacatggctgtggca
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctgtttcacaccattgaaactctcatgaggattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtagtacgatccaactatgaagcaatg
attgatcgtgctcacggaggccccaactttatgatgcattctgggatctctcaagcctca
gagtatgatgaccctccaggcctgagggagaaggcagagtatcttctaagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcatcagcaaggaatactgaagactgatgac
ctcataacaagattttttcgtttgtgcactgaaatgtgtgttgaaatcagttaccgtgct
caggctgagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgttat
cacaatctagatgcctttgtacgactcattgcactgttagtgaagcactcaggggaggct
accaatactgtcacaaagattaatctgctgaacaaggttcttggtatagtagtgggagtt
ctcctacaggaccatgatgttcgacaaagtgaatttcagcagcttccctaccatcgaatt
tttatcatgttgctcttggagctcaatgcacctgagcatgtgttagaaactattaatttc
caaacacttacagctttctgtaatacattccacattttgcggcctaccaaagctcctggc
tttgtatatgcctggcttgaactgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaagggctggcctatgtatgcacagctactgattgacttattcaaa
tatttagcaccttttcttagaaatgtggagctcaccaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctggttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatcccacccaattgtatccagttaagaaatttgatcctg
agtgccttcccgagaaacatgaggctcccagacccattcactcctaatctgaaggtggac
atgttgagtgaaattaacattgctccccggattcttaccaatttcactggagtgatgcca
cctcagttcaaaaaggatttggattcctatcttaaaactcgatcaccagtcacttttctc
tctgatctgcgcagcaatctacaggtatcaaacgagcctggcaatcgctacaacctccag
ctcatcaatgcactggtgctctatgtagggactcaggccattgcacatatccacaacaaa
ggcagcacgccttcaatgagtaccatcacccactcagcacacatggacatcttccagaac
ctagctgtggacttagatacagagggccggtatctcttcttgaatgcaattgcaaatcag
ctgcggtacccaaacagccacactcactactttagctgcaccatgctgtacctttttgcc
gaggccaacacggaagctatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctgattaaaaatcca
gcgtttaagttctggaaccatgagtttgtacactgtgccccagaaatcgaaaagttattc
cagtcagttgcacagtgctgcatgggacagaagcaggctcagcaagtaatggaaggaact
ggtgccagttag
DBGET
integrated database retrieval system
