Dipodomys merriami (Merriam's kangaroo rat): 138832880
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Entry
138832880 CDS
T11079
Symbol
Skic3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138832880 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138832880 (Skic3)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
138832880 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_17
TPR_12
TPR_11
ANAPC3
TPR_15
Sel1
TPR_9
ARM_TT21_5th
ARM_TT21_C
Fis1_TPR_C
TPR_5
ARM_TT21_2nd
Sey1_3HB
TPR_30
Retrotran_gag_2
TPR_20
Motif
Other DBs
NCBI-GeneID:
138832880
NCBI-ProteinID:
XP_069887156
LinkDB
All DBs
Position
Unknown
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVARTWHKLIKTRQEEGADKQELHQLWRKLTQLLAESTEDENNETQQ
LLLTAFENALVLSDTIPSEDHQVLYKHFIQCLSKFPHEAARLKKACEGMINIYPTVQYPL
EVICLHLIESGNLTDEGHQYCCKLVEMNSKSGPGLIGLGIKAIQDKKYDDAISNLTEGLK
ESPLCIAGWYHLAEAQVKMHRPKEAVLSCNQALNHIGNISASGGSFYQKNLCLRLKAEAL
INLSDCESSEEAIHTLDQVSDANNVPELLVLKGLAYLNKGSLDETTKIMEDLLSSYPDLA
KAHALEALIHFTKKDYIQAEKCFHRALEKDAEVAEYHYHLGLTYWFMGEETRKDKSKALT
HFLKAARLDTYMGKVFCYLGHYYRDIVGDKTRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMETALALLTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFIKASELNPDSTYSVCKVAAIQQILGKYKEAIAQYQLIIA
KKEDYVPALKGLGECHFMMAKAALVDYLDGKAVNYIEKALEYFTRALQHRADVSCLWKLV
GDACTSLHAVSSSKVNVNVLGIFLGQKDGKQTLKKNELLHLGGRCYGRALKLMSTSNTWC
DLGINYYHQAQHLAEIDSNTNDVKELLEKSLHCLKKAVRLDSSSHLYWNALGVVACYSGV
ENYALAQHCFIKSIQSEQVNAVAWTNLGVLYLINENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETIGSYDTMDLFRHTTELRMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLCKYVERIQNYAPAFTMLGYLNEHLQLKKEAAEAYQRAILLLQTGEDQDIYH
AAVRNYGRLLCSIGEYDKAIQAFKSTPLKDLEDIIGFALALFMKGLYKESNKAYERALSV
VESEQDKAHILTALAITEYKQGKMDVAKSLLFKCSILKEPTTESLQTLCALGLAMQDATL
SKAALNELLKHVKHKSSDYQRCLLTSAIYALQGRNVSVQRQASKAVHSNPADPALWSLLS
RVVAQYAQRNAKGGAIAGNVAHILDSNHGKKALLYTAVNQLAVGSSTGEDEKNIALKTIQ
KAAFLSPGDPAVWAGLMAACHADDKLALVNNTQPKRMDLYLALFSAVSASIKDKEFLENY
NQCLEKWSLLQAVTGLMDTGRISEAESLCTKNLKNHPDQPAIILLLRQVQCKSLLESQKP
LPDAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMSAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALEVCMANISSDHWPSLVQEATTEAMKLCFCPLAVLLQALLQFNLKMGARE
TRRLLERVVYQPGYPKSIVSTARWYLLRHLYAKNDYELIDVLVKNAETHKDRRALELNQK
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaggtgaagactgctttaaaaagtgcaagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacattgtaagacagtcttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgagctagaacaacctgatcaggcccag
ggggcttataagaaagctgctgaactagagccagatcaattactagcttggcagggctta
gcaagcttgtatgaaaagtgtaaccacataaatgccaaggatgacttacctggtgtttac
caaaagctcctggatctttatgaaagcgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctgtattaccaagaaaagaaacacctagaggtagcacgaacatggcac
aaattgataaagacaaggcaggaagaaggtgcagataagcaagagcttcatcaactgtgg
aggaagttgactcagttgctagctgagagcacagaggatgagaataatgaaacccaacaa
ctgcttttaactgcatttgaaaatgcactggtcttatcagatacgattcctagtgaagat
caccaagtgctttataaacatttcattcagtgtttatccaaatttccccacgaggctgct
aggttgaagaaggcctgtgaaggaatgataaacatctatcctactgtacagtatccatta
gaagtgatttgtttgcatttaattgaatcaggaaatcttactgatgaaggacatcagtat
tgttgtaaactagtggaaatgaattcaaaaagtggcccaggcctcattggcttaggtatt
aaggcaatacaagacaaaaagtatgatgatgctattagtaatttaacagaaggattaaag
gaaagccctctctgcatagctgggtggtatcatctggcagaagcccaagtcaaaatgcat
agacctaaggaagctgttctttcatgtaatcaagctctgaatcacataggaaatatcagt
gcatctggaggcagtttttatcagaaaaatctttgtcttcgtttgaaagcagaggctttg
attaatctctctgattgtgagtcttcagaggaagcaattcacacccttgatcaggtttct
gatgcaaataatgttccagaacttttggttctcaaaggtttggcctatctgaacaaaggt
tcattagatgaaactaccaagattatggaagaccttctttcttcttaccctgacttagct
aaagctcatgctcttgaggctttgattcattttaccaaaaaggactacatccaagcagaa
aagtgtttccacagagctcttgagaaagatgctgaagttgctgaatatcattaccatctg
ggactaacctattggtttatgggtgaagagacaaggaaagataaatcaaaggctcttacc
cactttctgaaggctgcaagactggatacatacatgggcaaggttttctgctatttaggt
cattattatagagatatagtgggtgacaaaactagagcccgtggatgttatagaaaagca
tttgaattggatgacactgatgctgaatctggagctgcagcagttgatttaagtgtggag
ctagaggatatggaaactgccttagctctcttaacaacagtaactcaaaaagcaagcgct
ggaacagcaaagtgggcctggcttaggcgaggactgtactatttgaaagctggtcaacat
tctcaagcagtggctgacttacaggcagccttaagggcagacccaaaggacttcaactgt
tgggagtctttaggagaggcatacttaagcagaggtggttatacaactgctttgaagtcc
ttcataaaagccagtgaactgaacccagattccacatacagtgtgtgtaaggttgcagca
atacagcaaatcctaggcaagtataaggaggcaatagcccagtaccagctgatcattgcc
aagaaggaagattacgtgcctgccttgaaaggtttgggcgagtgtcattttatgatggct
aaggcagctctagttgattaccttgatggcaaagctgtaaactacatagaaaaagctctg
gaatattttactcgggccctgcaacatcgagctgatgtatcctgcctttggaagctagtt
ggggatgcttgcaccagcctgcatgcagtttcatcatctaaagtgaatgttaatgtttta
ggaatttttcttggtcagaaagatggaaaacaaacattaaagaaaaatgagctcctccat
cttggaggaaggtgttatggtcgggcattaaaattgatgtctacatctaatacttggtgt
gatcttggaattaattattatcaccaagcacagcatctggcagaaatagacagcaacaca
aatgatgttaaagaattgctggagaagtctttgcattgtctgaaaaaggcagtgagactc
gacagtagcagtcacttatactggaatgctcttggtgtcgttgcatgttacagtggtgtt
gaaaattatgcccttgctcagcactgtttcatcaaatccatccagtcagaacaagttaat
gctgttgcctggaccaacttgggagtgctgtatctcataaacgaaaacattgagcaagct
catgaagctttcaaaatggctcagtcccttgatccatcttatttaatgtgctggattgga
caagctcttattgcagagacaattggaagttacgacaccatggatctttttaggcacact
acagaactcaggatgcatactgagggagcaataggttatgcatattgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctgtaccagtacaatatcctccagatgaat
gcaattccagcagcacaagttgttttgtgcaaatatgtggaaagaattcagaattatgct
ccagcttttacaatgttgggttacttaaatgaacatctacaactgaaaaaggaagcagca
gaagcataccaaagggcaattttgttgttacagactggagaagatcaagatatttaccat
gctgcagtaagaaattatggaagattattatgttccattggtgaatatgataaagctatc
caagcttttaagtcaacaccccttaaagacttagaagatatcataggttttgcattagcc
ttgttcatgaaaggactatataaagagagcaataaagcctatgaaagagccttgtctgtt
gttgaatcagagcaagacaaagcccatatcttgacagctctagcaataacagaatataaa
caagggaaaatggatgtagccaagtcactgctattcaagtgctctattttaaaggaacca
actacagaaagccttcaaaccctgtgtgccctagggttggcaatgcaagatgctacgctg
tccaaagcagcacttaatgagttactgaagcatgtcaaacacaaaagtagtgattatcag
agatgtcttcttacttcagcaatttatgcactccagggccgcaatgtatcagtacaaaga
caagcttcaaaagctgtccacagtaacccagctgaccctgctctttggtctttgttgtcc
cgagttgttgctcagtatgctcaacgaaatgcaaagggaggtgctatagcaggaaatgtg
gctcatattttggactcaaatcatggaaagaaggcattgttgtacactgcagtaaatcag
ttggcagtgggaagcagtacaggagaagatgaaaaaaatattgcactgaagaccattcag
aaggcagctttcctttctccaggtgaccctgctgtctgggctgggctgatggcagcctgt
catgctgatgacaaactagctctagtcaacaacactcagccaaagaggatggatttatac
ttggcattgttctctgctgtttctgcttcaattaaggacaaagaatttcttgaaaattac
aaccaatgtcttgaaaaatggtctcttttacaagctgtcactggtctcatggacacagga
agaatatctgaagctgaatctctatgtacaaagaatttaaagaatcaccctgatcagcca
gctattatcttacttttgagacaagttcagtgtaaatcactcctcgagtcacaaaagcca
cttccagatgctgtgcttgaagaacttcagaaaacagtaatgtccaactcaacctctgtt
ccagcttggcaatggctggcacaggtctatcagtcccaaggaatgatgagtgctgcagag
atgtgttacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctc
tcaagtctgttgaaactagcactgcttgcattagaagtgtgtatggctaatatttctagc
gatcactggccatctctagttcaagaagctacaactgaggccatgaaactttgcttttgt
ccattggctgtccttctgcaagctttattacagttcaacctcaaaatgggggcaagagag
acacggcgacttttggagagagtggtgtatcagcctggatatcccaaatctattgtttca
actgcacgttggtacctattgagacacctgtatgccaaaaacgactatgagctcattgat
gtgttggtaaagaatgctgaaactcataaggacagaagggcattggaactgaatcagaaa
ttgtcctcccaataa
DBGET
integrated database retrieval system
