KEGG   Daphnia magna (water flea): 116924752
Entry
116924752         CDS       T07514                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03030  DNA replication
dmk03410  Base excision repair
dmk03420  Nucleotide excision repair
dmk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116924752
   03410 Base excision repair
    116924752
   03420 Nucleotide excision repair
    116924752
   03430 Mismatch repair
    116924752
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dmk03032]
    116924752
   03036 Chromosome and associated proteins [BR:dmk03036]
    116924752
   03400 DNA repair and recombination proteins [BR:dmk03400]
    116924752
DNA replication proteins [BR:dmk03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116924752
  DNA Replication Termination Factors
   ELG1-RFC complex
    116924752
Chromosome and associated proteins [BR:dmk03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116924752
DNA repair and recombination proteins [BR:dmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116924752
  Check point factors
   HRAD17(Rad24)-RFC complex
    116924752
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_14 RuvB_N AAA_22 ResIII AAA_11 AAA_24 AAA_assoc_2 DUF815 AAA_16 DNA_pol3_delta DEAD AAA_5 AAA_7 AAA_30 AAA_19 TIP49 TniB AAA_3 PhoH ATPase_2 Mg_chelatase T2SSE BrkDBD AAA_2 Viral_helicase1 Thioredoxin_6
Other DBs
NCBI-GeneID: 116924752
NCBI-ProteinID: XP_032787174
LinkDB
Position
LG6:complement(427229..429058)
AA seq 328 aa
MTSSVNLPWVEKYRPKQLDDLISHQDIISTIRKFIHENRLPHLLFYGPPGTGKTSTILAC
AKELYTPQQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSGFKLIILDEADAMTND
AQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEE
RLKVTEDGRQALLSLAHGDMRRVINILQSTSMAFDEVNEENVYTCVGHPLKSDIANIISW
MLNEDLTSAYSKIRDLQTFKGLALQDILTEIHLYVHKIEFPPNVRIFLLEKMADVECRLS
AGCSEKLQLGSLVAAFDTIKYLVAKEVS
NT seq 987 nt   +upstreamnt  +downstreamnt
atgacatcctctgtaaacctaccctgggtagagaaatatcggccaaaacaattggatgac
ttgatatcgcatcaagatataatttcgacaatacgaaaatttatacatgaaaatagactt
cctcacttacttttctatggaccaccgggcacaggaaagacaagcactatattagcatgt
gccaaagagctatatactcctcaacaattcaattctatggttttagagctaaatgcttct
gatgaccggggtattaatgttgtacggaatcagatcatgagttttgccagcacaagatca
atatttaaatctggtttcaaacttattatcctggatgaggcagatgccatgacaaatgat
gcccagaatgcactaagaagggtcattgagaagttcactgaaaatgttcgattttgcctc
atatgcaattacatgagcaaaattataccagccattcagtcacgttgcactcgttttcga
tttggcccgctaaaatcggaccaaattctacctcgaatgaactacgttatcgaagaagaa
aggcttaaagtgacagaagatggccgtcaagcgcttttgagcttagctcacggagatatg
cgtcgagtcatcaatattcttcaaagcacttcaatggcctttgatgaggtgaatgaagag
aatgtctatacttgtgtcggtcacccccttaaatcagatattgctaacattatttcttgg
atgctaaacgaagatttaacatcggcttacagcaaaatacgggatcttcagacttttaaa
ggtctcgctttgcaagatatcttaacggaaatccacttgtatgttcacaaaattgaattc
ccgcccaatgtcagaatctttttactggagaaaatggctgatgttgaatgtcgtttatct
gctggatgttccgaaaaattacaactaggatctctggtggccgctttcgatacgattaaa
tatttggttgcaaaagaggtatcgtaa

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