Daphnia magna (water flea): 116924752
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Entry
116924752 CDS
T07514
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03030
DNA replication
dmk03410
Base excision repair
dmk03420
Nucleotide excision repair
dmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116924752
03410 Base excision repair
116924752
03420 Nucleotide excision repair
116924752
03430 Mismatch repair
116924752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmk03032
]
116924752
03036 Chromosome and associated proteins [BR:
dmk03036
]
116924752
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116924752
DNA replication proteins [BR:
dmk03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116924752
DNA Replication Termination Factors
ELG1-RFC complex
116924752
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116924752
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116924752
Check point factors
HRAD17(Rad24)-RFC complex
116924752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_14
RuvB_N
AAA_22
ResIII
AAA_11
AAA_24
AAA_assoc_2
DUF815
AAA_16
DNA_pol3_delta
DEAD
AAA_5
AAA_7
AAA_30
AAA_19
TIP49
TniB
AAA_3
PhoH
ATPase_2
Mg_chelatase
T2SSE
BrkDBD
AAA_2
Viral_helicase1
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
116924752
NCBI-ProteinID:
XP_032787174
LinkDB
All DBs
Position
LG6:complement(427229..429058)
Genome browser
AA seq
328 aa
AA seq
DB search
MTSSVNLPWVEKYRPKQLDDLISHQDIISTIRKFIHENRLPHLLFYGPPGTGKTSTILAC
AKELYTPQQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSGFKLIILDEADAMTND
AQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEE
RLKVTEDGRQALLSLAHGDMRRVINILQSTSMAFDEVNEENVYTCVGHPLKSDIANIISW
MLNEDLTSAYSKIRDLQTFKGLALQDILTEIHLYVHKIEFPPNVRIFLLEKMADVECRLS
AGCSEKLQLGSLVAAFDTIKYLVAKEVS
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgacatcctctgtaaacctaccctgggtagagaaatatcggccaaaacaattggatgac
ttgatatcgcatcaagatataatttcgacaatacgaaaatttatacatgaaaatagactt
cctcacttacttttctatggaccaccgggcacaggaaagacaagcactatattagcatgt
gccaaagagctatatactcctcaacaattcaattctatggttttagagctaaatgcttct
gatgaccggggtattaatgttgtacggaatcagatcatgagttttgccagcacaagatca
atatttaaatctggtttcaaacttattatcctggatgaggcagatgccatgacaaatgat
gcccagaatgcactaagaagggtcattgagaagttcactgaaaatgttcgattttgcctc
atatgcaattacatgagcaaaattataccagccattcagtcacgttgcactcgttttcga
tttggcccgctaaaatcggaccaaattctacctcgaatgaactacgttatcgaagaagaa
aggcttaaagtgacagaagatggccgtcaagcgcttttgagcttagctcacggagatatg
cgtcgagtcatcaatattcttcaaagcacttcaatggcctttgatgaggtgaatgaagag
aatgtctatacttgtgtcggtcacccccttaaatcagatattgctaacattatttcttgg
atgctaaacgaagatttaacatcggcttacagcaaaatacgggatcttcagacttttaaa
ggtctcgctttgcaagatatcttaacggaaatccacttgtatgttcacaaaattgaattc
ccgcccaatgtcagaatctttttactggagaaaatggctgatgttgaatgtcgtttatct
gctggatgttccgaaaaattacaactaggatctctggtggccgctttcgatacgattaaa
tatttggttgcaaaagaggtatcgtaa
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integrated database retrieval system