Daphnia magna (water flea): 116924935
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Entry
116924935 CDS
T07514
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116924935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116924935
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116924935
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116924935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116924935
NCBI-ProteinID:
XP_032787426
LinkDB
All DBs
Position
LG6:complement(6029636..6039216)
Genome browser
AA seq
2486 aa
AA seq
DB search
MSLDSLSLALTQIQYLVNSLNKKNYLQSRNSIEDLVTIYGTEAERHLLCCCLAGVDFVGL
GNNENSSLKSSNPSKEKEREQLLTDYFGCCITQPAFPSLLHSSLEQPLRSNFNRSVQQLP
KNSSAFISLFCRFLRLSRSQEVVLRIALLESFNSEARSQSILVIRQKLGELLKNFADQDR
HTAPLEGGLQESSPEVIHYILSRLINESDKFGINRDLVEDVLRCLRRDYPRELVPVILAP
ILYEEQGVDYTCHKMAHETNSLSKNMVETSLADLILETGYSFTSSLEECRANFTAFGFRE
LSAASVARAVIYMARTHAVLDEHSLRHLRNGTSQSWPEQESSGDKNDEGSPTSWNMEIFI
QVVTEIAPSLNWKEVVSELDHPCFLIRDRTGLRLLLTALQLGLQTQGTTFPTDLLYQSWN
NAEGQLSLLSQLLRNTDLFCLADYPHHAINVEILKSPPEPDNKKLASWKCLGLLETLLNL
LENGGLYSQVQDLLKEPVQHCPDVLVLGLLQLTQPMTKLRQELLSSLIPVFLGNHPNSAI
ILHHVWHAQSPLVKPLVMHAMAEWYMRAEHDQARLSRILDVAQDLKALSMLLNVQRFPFV
IDLSCLASRREYLKLDKWLTDKMREHGETFVAACVNFLHQRCPQISGKVKEETGLKPTQL
PPDTLAIMLSCLQVWTGNVSQELSETINTMVANCNVLNRARAQPPPGVLKPIRPGSGVGV
DVSFPPGTLSSQLFPPPGVDATGLSSSLNNMGLGPPTSSGFGVNIGPNTLGGNTPAPGSP
GKLFSSMSLLESGLNQPVVVGMQNNSNPSQIQSTFSIFSSLTGSGTMPGSSSTNPLGIGI
PSSMASGSGNGQSSVVTSNIGSGTVGSPGSVVNGPVRVGMNPHLGQERRTGDVSSAFADM
PQAVSKDIEDETNSYFQRIYNQSPSTPTLTVDEVLELLKKFQHSTNRREREIFDCMLRNL
FEEYRFFPQYPDRELHITAQLFGGIMEHGLVTYMALGVALRYVLEAVRKPHGTKMYYFGI
TALDRFRHRLKEYPQYCQHLASIPHFREFPPHLIEYIDNGSRGVEPPNRPHGPVLPQVTT
AAKTTTPTTPTTTVAGKTSSTAAPMSGRPSIANATNIDTLLVASEKDVLIVDPPENVQDK
VSFIFNNLSQLNLTQKCEELRDIMGEEHWSWVAQYLVMKRASIEPNFHTLYSNFLDTLKL
TELSRLVISETFRNIKVLLRSDKGIANFSDRTLLKNLGHWLGLLMLSKNRPILQGDIDLK
SILVEAYHKGQQELLYVVPFVAKVLESCAKSKVFKPPNPWTLGIMNVLAELHQEPDLKLN
LKFEVEVLCKTLAIDIHDLKPGVVFKDHNRLSRLEPQLSQPQLQQMYQPAPQLQIIQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPQLAGSPAQQMQSQTGTTTPTPAHAI
QGPPEPRFSYLDINVTSLAGLAQHLVVNNNIPLLTAHPNLRILIRPAVERAVQECIHPVV
DWSMKIALTTCEQIIKKDFSLDADDTRMRAAAHHMVRSLSAGTALIRCRDHLLLTIATNL
KTAFSAALQRSTSPQQKELVEQAASLTAQDNVEPACAFIQKTAVEKSISEIDKRLATEFD
LRKHARNEGRRYYDPAVFAYQAERMPEPIRLKMSGVTAQQAAVYEEFARYIPGFLPVTER
DAAMLVPKVIPTFTNDEIGVILEKVAMELERFLQSLLPLGSSTQAVAIGSLLEAVILARS
SRDHGAHITLLQKAFEGLVESLTSFATTGNDPEAVVRFRDAHLLVLKALQDPQAYGPQWT
NRQVTRCWAECREEFRYNLDILDCLVRAHLINLQQFDMQLASVLEQALNAGIGSSILALG
FAMQLVHVYLLEGPASGAPVVITENDLANTIEILTRIAAHARQPPDGLATILELLRAGHE
TGLMDRATGGPGGPTALIHSGIAQARDYDDPHGLPEKTEYLLQEWVAMYHLPNAGRDSSK
AFGHFVTQMSLHGVLKTDDLITRFFRLCTQFCVDISYRALASEPTADLIRSKAFHTLDAY
VRLIALLIKHSGDANNGVTKVNLLNKVLGIVAGVLLQDQEVRGAEFQQLAYHRILIMLFL
ELNAPEQVLDSINFQVLTAFCHTLHILRPAKAPGFAYAWLEIVSHRVFIGRLLSITPQQK
GWGMYAQLLIDLFKFLAPFLRNAELSKPVSMLYKGTLRVLLVLLHDFPEFLCDYHYGFCD
VIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEISHAPRVLTHFAAMIQPPTLKK
DLDSYLKTRGPVTFLSELRSVVQVHVSSMNLHVSPEPGMHYNLPLLNALVLYVGTQAIQS
IQTKGLSPSMATIGHSSYMDIFQSLAVNLDTEGRYLFINAIANQLRYPNSHTHYFSCVLL
CLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVFKFWNHEFVHCAPEI
EKLFESVARSCMVVQKQTPRDAENHD
NT seq
7461 nt
NT seq
+upstream
nt +downstream
nt
atgagcctagactcactgtcactggcgctgacacagatccaatacctggtcaacagcctt
aacaagaagaactatcttcaatctagaaatagcattgaagatctggttaccatttatggt
actgaagctgaaagacatctactttgttgctgtcttgctggagttgactttgttgggtta
ggaaacaacgaaaattcatccctcaaatcaagcaatcccagtaaggagaaagaaagagag
cagcttttgactgactattttggatgttgcatcactcagccagctttccctagtcttctg
catagttcccttgaacagccattaagaagcaatttcaatagaagtgttcaacaactaccg
aaaaacagctcagcattcatcagcctattttgccggtttctgcgattatcacgcagccag
gaagtagttcttaggattgctcttttagaatcatttaactccgaagcgcgttcacagtct
atattggtcatacgccagaagcttggtgagcttttgaaaaacttcgcggaccaagatagg
catactgccccattggaaggagggctacaggaatcgtctcctgaagtcattcattacatt
cttagtcgattgatcaacgaatccgataaatttgggatcaacagagatcttgtagaggac
gtattgaggtgtttgcgtcgtgactaccctcgtgaactggtccctgtcattttggccccg
atcctgtacgaggagcaaggggtagactatacctgccataaaatggcacacgaaaccaac
agcctgagcaagaatatggtagaaacttccttggcggatttgatccttgaaacaggatat
tcattcacatcaagtctcgaagaatgtcgtgcaaacttcacggcctttgggtttcgagag
ttgtctgccgcttctgtggctcgtgcagttatttatatggctcgtactcatgcagtactg
gacgaacattctcttagacacttgagaaatggtacttcgcaatcctggcctgagcaagaa
tcctccggcgataagaacgacgaaggttcgcctacctcatggaacatggaaatatttatt
caggttgttactgaaatagcaccaagtttgaactggaaagaagtcgtttctgaactggac
cacccttgctttctcataagggatagaacaggattacgtcttctactcactgctttgcaa
ctgggcctacaaacacaaggcactactttcccaaccgacctgttgtaccaatcatggaac
aacgctgaaggccagctctcattgctttcgcaactactgaggaatacggatcttttttgc
cttgcggactatccacaccatgccattaacgttgaaatcctgaaatcccctcctgaacca
gataacaagaagctcgccagttggaagtgtttaggactgcttgaaactctactcaactta
ttggaaaatggtggcctttatagccaggtgcaagacttactaaaggaacctgtacagcac
tgcccggatgtattggtccttgggcttcttcagctgacacaaccaatgacaaagcttaga
caagaattactcagtagtttaattcccgtctttctgggcaaccacccaaattctgccatc
atattacaccatgtctggcacgcacaatcgcccttggtcaaacctctggtgatgcatgca
atggcagaatggtacatgagagctgaacatgatcaagctcgtttatctaggatccttgac
gtagcacaggacctgaaggctctgtctatgcttctaaacgtgcaacgtttcccttttgtt
atcgacctttcttgtctagcttcacggcgtgaatatctaaaacttgacaaatggctgacg
gacaaaatgcgtgaacatggtgaaactttcgtcgctgcatgcgtaaacttcctccaccaa
agatgccctcagatatcaggcaaagtcaaggaagaaacgggcctcaaacccacgcagcta
ccgcctgatacgctcgcaatcatgttgtcgtgcctccaggtttggactgggaatgtgtca
caagagttgtcagagaccatcaataccatggttgccaactgcaacgtattgaaccgtgca
cgtgcgcaacctccaccaggcgttttgaaaccaatccgtcccggtagtggagtgggagtc
gacgtttcgtttccacctggaacgttgagcagtcagttgtttccgcctcctggagttgac
gccacaggcctttcgtctagcctcaacaacatgggcctaggtccaccgacgtcgtcggga
tttggagttaacataggaccaaatacgcttggtgggaataccccggcgccagggtcacct
ggaaaattattttctagcatgtctttactagaatctggtttgaaccagccagtagttgtg
ggaatgcagaacaattcaaatccaagtcaaatccaaagtacgttctctattttttcttcc
ttaacgggaagcgggaccatgcctggatcttccagcactaacccactaggcataggtatt
ccatcttctatggcaagtggaagcggaaacggccaatcgagtgtggttacaagcaacatc
gggtctggtactgttggttctcccggatcagtcgttaacggcccagtgcgtgtaggaatg
aacccacacctaggccaagaacgaagaacaggtgatgtttcaagtgcattcgccgatatg
ccgcaagctgtttcaaaagatattgaagacgaaacaaacagctattttcaacggatttac
aatcaatcgccttccacccctactttaacagtggacgaagtcctcgagctcctgaaaaag
ttccaacattccaccaaccgtcgcgagagggaaatctttgattgcatgttacggaatctt
ttcgaagagtatcgctttttcccgcagtatccagatcgcgagttgcacataactgctcag
ctattcggtggaataatggagcatggtctcgtgacctatatggctttgggggtggcgctt
cgttacgtactggaagctgtccgaaaaccgcatggcacaaagatgtactattttggcatc
accgccctagaccggttcagacatagattgaaagaatatccccaatattgtcagcacttg
gctagtattccccatttccgggaatttccccctcatctgatcgagtatatagataacggt
tcacgtggtgttgagccgccgaaccgtcctcatgggccggtactaccgcaagtgacgaca
gctgcgaaaactactactccaacaacaccgactactacagttgctggtaaaacttcttct
acagcagcacccatgagtggccggccctctatagccaacgccaccaacatcgacacatta
ctagttgcttcagagaaagatgtcttgattgttgatccaccagagaatgtccaagacaaa
gtcagcttcatattcaataacctaagtcaattgaatttaacccagaagtgcgaagaatta
cgtgatatcatgggcgaggagcactggtcatgggttgcccaatacttggtgatgaaaagg
gcttcgatagagccaaattttcacacactttattccaacttccttgacacgttaaagttg
acggaattgagtagacttgtcatcagtgagacgttccgcaacataaaggtacttcttcgc
agcgataagggaatagccaacttctccgaccgaacactcctcaaaaatcttggccattgg
cttggcctcttgatgttgtccaagaaccgaccgattcttcagggagatattgatttgaag
tcgatcctagtcgaagcgtatcataaaggccagcaggagctgctctacgtggtgccgttc
gtggccaaagtcttagaatcctgcgccaagagcaaagttttcaaaccacccaatccatgg
actttaggaatcatgaatgtgttggcagaattgcatcaagaacccgatttgaaacttaat
cttaaatttgaagtcgaagttctttgtaagactttggccatagatattcacgacctcaaa
cctggcgtagtctttaaagaccacaaccgtctttcgcgtttagaaccgcaattgtctcag
ccacaactacaacaaatgtaccaacctgcaccacaacttcaaatcattcagcagcaacaa
caacaacagcagcagcagcagcagcagcaacaacaacaacagcagcagcagcagcagcaa
cagcaacaacaacaacaacaacagccgccacctcctccgccgccacaactagcaggttca
cctgctcaacaaatgcaatcgcaaacaggcacaacgaccccaactcctgcccacgcaatt
caaggtcctcccgaaccacgcttttcgtacttggacataaacgtcacttctctggcggga
cttgctcagcatttagtagttaacaacaacataccgctactgacagctcatccgaacctg
aggattttaattcgtccggctgtcgaacgagccgtacaagaatgtattcatccagttgtt
gattggtctatgaagatagctttaaccacgtgtgagcaaataattaaaaaagacttctcg
ctcgatgccgacgatacccgcatgcgggcggctgctcatcacatggtccgcagccttagc
gcaggcacggcgttgattcgttgtcgagatcacttgcttctaaccattgccaccaatctt
aagacagcattttcggcagcgctgcaaagaagcactagtcctcaacaaaaagagctggtt
gaacaggcggccagtttaaccgcccaagataatgttgaacccgcgtgtgcttttattcag
aagacggcagttgagaaatcgatctctgaaattgataagcgccttgcaactgagtttgat
ttgcgcaaacacgcacgcaacgaaggtagaagatactatgaccctgctgtttttgcatat
caggctgagcggatgccagagcctattcgtttgaaaatgagcggtgtcacagcacagcag
gctgctgtttatgaggagtttgcccgatacatccctggcttcttacctgtcaccgaacga
gatgcagccatgctggtgcctaaagtgattccaacatttaccaatgatgaaatcggagta
attttggaaaaagttgccatggagctggaacgtttcttgcaatcattgttgccactgggc
agctcaacacaagcagttgcaatcggttcccttttggaagctgtcatcttagctcgttcc
tctcgtgaccatggagcccacatcactttgcttcagaaagctttcgaaggactcgtggaa
agtctgacaagctttgctactactggaaacgaccccgaagcggtggtccgttttcgcgac
gcacatttgttagtccttaaagccttgcaagatcctcaagcatatgggccgcaatggact
aatcgtcaggtgacgcgttgttgggccgagtgccgtgaagagttcagatataaccttgat
attcttgactgcctggtgcgggctcacctcattaacttgcaacaatttgacatgcaatta
gcttctgtgctagaacaagccctaaacgctgggataggatcttctatattagcactcggt
tttgccatgcaactagtacacgtctatttactcgagggaccagcttccggagcccctgtg
gttatcacagagaatgacttagcaaacacaatcgaaattctgacccgcattgctgctcac
gccagacaaccgccagatggtcttgcaactattctggaattactacgagccggccacgag
acggggctcatggatcgtgcgactggtggtccaggtggtccaacagctttgatacattct
ggaattgctcaagctcgcgactatgacgatccgcatgggttgccagaaaaaacagaatac
ctactgcaggagtgggtagcgatgtatcatctaccgaacgctgggcgcgattcatctaaa
gcctttggtcactttgtgacccaaatgagtctacatggagtattgaaaacggatgaccta
attactcgctttttccggctctgcacgcagttttgcgttgatatctcctatcgagctttg
gcttcggagccaactgccgacttgatccgcagcaaagcttttcatactctggacgcctac
gtgcgacttattgccttgctcattaagcactccggtgatgccaataatggcgtaacaaaa
gtgaatcttctcaataaagttttaggaattgtagcaggagttttgctacaagaccaagaa
gttcgtggcgcggaattccagcagttggcttatcatcgcatcctcattatgctgtttctt
gagctaaatgcacccgagcaagttcttgattccatcaactttcaagtactgacggctttt
tgccatacgctgcacatactgagaccagctaaggccccaggtttcgcttatgcatggctg
gaaattgtttcgcatcgggtctttattggtcggcttctgtccattacgccacagcaaaag
ggctgggggatgtatgcccaactactgatcgacttgtttaagttcctggccccatttcta
cgcaacgccgaattgagcaagcctgtctcgatgttgtacaaaggaacgctccgtgtcctt
ttggttttgttgcacgactttccggaattcctctgcgactatcactatggattctgtgat
gtgatccctcccaattgtattcagatgagaaatctgattttgtcggcgttcccacgtaat
atgcggctgcctgatccattcacgcccaatctcaaggtggacatgctaccggaaatcagt
cacgctcctcgggtactgacccattttgcagcaatgatccaaccgcctacgctcaaaaag
gatttggattcgtacctgaaaacacgtggacctgtaacctttctttccgagttgcgaagt
gtggttcaggttcatgtctcatccatgaatcttcacgtgtctccggaacctggaatgcat
tataatttgccgttgttgaacgcattggtcttgtacgttggtacccaagccattcaatcg
attcagaccaaaggattatcgccgtcaatggctaccattggccattcgtcttacatggat
attttccagagtttagctgttaacctcgacacggaagggcgctatctgttcatcaatgcc
attgccaatcagctgcgttaccccaatagccacacccactacttcagctgcgttcttctc
tgtctctttgcagaagcgaattccgaggcgattcaagaacaaatcactagggttttgctc
gagaggctcattgtcaaccgaccacacccttggggattactcattacattcatagaactg
attaaaaatcctgttttcaagttttggaatcatgaatttgtccactgcgcacctgaaatc
gaaaaactgttcgagtcagtagctcggtcgtgcatggtggtccagaaacaaactcctcgg
gatgcagaaaaccatgattga
DBGET
integrated database retrieval system
