Daphnia magna (water flea): 116926485
Help
Entry
116926485 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
dmk03037
]
116926485
Cilium and associated proteins [BR:
dmk03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
116926485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_2nd
Beta-prop_IFT140_1st
TPR_IF140_C
WD40_CDC20-Fz
TPR_COPA_B
ANAPC3
Beta-prop_EML_2
TPR_GEMI5
Beta-prop_HPS5
Beta-prop_WDR19_1st
Hira
Beta-prop_VPS8
TPR_7
TPR_2
DUF4398
TPR_12
Motif
Other DBs
NCBI-GeneID:
116926485
NCBI-ProteinID:
XP_032789282
LinkDB
All DBs
Position
LG7:complement(12127143..12132734)
Genome browser
AA seq
1352 aa
AA seq
DB search
MTIFVERLLIQLNGKALDQLVCHSKLNFTAVVAENNQLYIFDESTLLHGYPWKCPSVLLS
VKWHPSLGVVVVGLNSGEIYTLILDSKTIREIKLPVVHSYPIQFLEWASESQLLSLDSVG
LLTVWNHSKDNHFQKINEHDVKDTPSQMTCFRLPLPPWECFIGSSSGAIYHAIQDVATCV
EVVRMDRAIQNIVSHEDSLCVLTSGGIVSVYRKNKTKDGIKSIELLNTVKISGKSRLIQL
TWLSKNVLALTGGDLTIRLWNCQSNDTFLLPLPDVAELTLHPGAEHFTTLAYLPNKAAPS
LLSAATNLGGIVFWRDNNSRDNINSLEDDWHFIGLVGLPGGSIEHSIWGTKFLFVHNGSS
LYQIVQQQPSVAFRDEVGLVQLSSSVVAVQKYSNSVQIDLPVRIAGIDVSGNHLLVWGEE
KVVIYRMGVATSNEKPFAVGNFECGCLLVRLHKTACFCLEGTLIQMRNFQGSSLCSPLSF
MDSEGSPVALAISGDFLCVASSSGYVKLWDVANSDPKLHINTKNVASNISGFMRFRSVKT
NSDGTCISFTADADEGLSKLFIWRTTMNSVEFFNVAAEWTEEQGTLQAHFWDEEEPRIVV
CQLRGNQSSCLVSLLVADDQQELLVQDVVPMAMDELIGVQLPHYAILDEATKIHMRLLAS
LASLNDHSDKAARDALLSFSCHLRRGRVEQAYQAVRPFTNPKIWESLARSCVQLRRPDVG
LICLGKLGNAKAAAAVRSAQAKYVGQVDAITAVLAVQLGMIKEAEAMCEQSSCYDLLSRM
YQASNRWEAALQLAHTKDRINLKRTYYEYARYLEGEGKTALALEMYEKCQTHHFDVPRML
FEDTAALQSYCTSGQDPERLRWWAQFLESSGEMDAALDHYARAGDYLSLVRLHCYLGDLS
RATELAEQSQDRAACFHVARQYEANDNVPEALKFFGQASAYGNAVRLCKEHELDDQLYRY
AMQGEQEEMVEAARYFEAPSSTSDRQPRFDRAVMLYSKAGLLDTALDLASRTEQHEAVLE
LSRRLDKNSNPASLQRCADYLASHRHYGAAVDLLVMAGKYSDAVDMCLKFNVTLTEALAD
QLGSADNNSRLLLQLAEVAQRQGDYQLAAKKFTQAGDKYQAMKALMKSGDTDRVIFFANV
SRQPDIYILAGNYLQTLDWRSHPEYVKHIVTFYTKARSLDLLVGFYEACAQAEVDEYQSY
DNAMDALKEAHKIVSKTPENNQSTKSNMLAMKMAFLEQFINIKQMSATNSQVIPQFESIL
SSPGMDLGILRPGNVYATIFQLYVDHQMHNEALQTLDGMKTTIPNFMTYLDRDTVSKLCF
TLNLSPTLYLKQDFQDEEENPEDITEIINQRK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgacgatatttgtagagaggttattaattcagcttaatggaaaagcattggatcaactt
gtttgccattccaagttgaatttcacggctgtagttgccgagaacaaccagctgtacatt
ttcgatgagagcaccctcctacatggatatccttggaaatgcccttcagtgctgctgtct
gtcaaatggcaccccagtcttggagtcgtcgttgttggtttgaattccggagaaatttac
acactcattttggattctaaaactataagagaaataaagctcccagttgttcacagttat
cccattcaatttcttgaatgggcaagtgaaagtcagcttttaagcttagacagtgttggc
cttttaacagtatggaaccattccaaagacaatcatttccaaaaaataaatgaacatgat
gtaaaggacacaccatcccaaatgacctgctttagattacctttgccaccgtgggagtgc
ttcattgggagctcatccggtgccatttatcatgcaattcaggatgttgcaacctgtgta
gaagttgtccgcatggatagagcgattcaaaacattgtaagtcatgaagattctctttgt
gttttgacatctggtggaatcgtttccgtttaccggaaaaataaaacaaaggacggaatc
aagagcattgaacttctaaatacggtgaaaataagcggtaaatcccgcttgattcaactg
acttggttgagtaaaaatgtgcttgccctgactggcggcgatttgacaatccgtctttgg
aactgtcaaagcaatgacactttcctcttgccactgcctgatgtagctgaacttaccctc
catcctggggcagaacacttcaccacgctggcctatctaccaaataaagcagcgccctcg
ctcttgtccgctgcgaccaatttgggaggtatcgtattttggcgggacaataacagtcgt
gacaacatcaacagtctcgaggacgattggcattttattggtctggttggcctccccgga
ggttctatcgaacactccatctggggaacgaagtttctgttcgtacataatggatctagc
ctctatcaaatcgtccaacagcagccgtccgtcgcatttagagatgaagttggcttagtt
caactttcgtcgtctgtcgtggccgtccaaaaatattcaaattccgttcagatagattta
cccgttaggattgctggcattgatgtttctggaaaccatctccttgtgtggggagaggag
aaagttgttatttatcgaatgggagttgctacgtccaacgaaaagccttttgcagtcgga
aattttgaatgcggttgcttgctggtgcggcttcataaaacggcctgcttttgcctggaa
ggcactttaatccagatgcggaattttcaaggctcctcgttatgttcgccactgtctttc
atggactcggaaggttctcccgttgcgttggctatctccggtgattttctttgcgtcgcg
tcgagcagtggatacgtcaaactatgggatgtggccaatagtgatccgaagcttcacatc
aataccaagaacgtggcatcgaacatatctggttttatgcgattccgttctgtaaaaacc
aacagcgacggcacttgcatctcctttacggctgatgcagatgaagggctatctaaatta
ttcatatggcgaacaactatgaattcggtggagttctttaatgtagccgctgaatggaca
gaagaacaaggcactctccaagcccacttttgggatgaagaagaaccccgtatcgtagtt
tgccagctcagaggcaatcaaagtagctgcttggtatcgcttttggtggcggacgatcag
caagagcttctggttcaagatgtggtacccatggcaatggatgaactaattggcgtacag
cttccccattacgccattctggacgaagcgacgaaaattcacatgcgcttactggccagt
ttggctagtttgaatgaccacagcgataaagcagcccgcgacgccctgttgtcattcagt
tgtcacctaaggcgaggaagggtagaacaagcttaccaggcggtccgcccttttaccaat
ccgaaaatatgggagagcttagctcgtagttgcgtccaacttagacgccctgacgttggc
ctcatttgcttggggaaactgggtaacgccaaggcagccgcagcggtgcgatccgcccaa
gcaaaatatgtaggacaagtggatgcaatcacggcagttctcgctgtccagctgggcatg
ataaaagaagctgaagcgatgtgtgagcaatcttcttgctacgatctacttagccgaatg
taccaagcgtctaaccgatgggaagcagcgttacagttggctcatacaaaggatcgcatc
aatttgaaacgaacatactatgagtatgctcgctatctggagggcgaaggcaagaccgca
ctagcgctagaaatgtacgaaaagtgtcaaacgcaccatttcgatgttccacgaatgctc
ttcgaagatacggcagcccttcaaagctattgtacctccggccaagacccagaacgactt
cgttggtgggctcagtttctggaaagcagtggcgaaatggatgcagctctggaccattac
gccagggcaggcgattatctttcactggtgcgactccactgctatttgggcgatttgagt
agggcgaccgaattggctgaacagagtcaagatcgtgcagcctgctttcacgttgcacgt
cagtacgaggctaatgataacgttcccgaggctttaaaatttttcggtcaggcctcagct
tatggcaacgcagtgcggctatgcaaagaacacgaattagatgatcaactgtatcgctat
gccatgcaaggtgaacaagaagagatggttgaagctgcacgctatttcgaggccccatcg
tccactagtgatcgccagccgagattcgaccgagccgttatgctttatagcaaagccgga
ttacttgacactgcccttgatttggcatccagaacggagcagcatgaagctgtgttagaa
ttgtccagacgtctggacaaaaattccaaccctgcttcattacaacgctgtgctgattac
ttagcgagtcatcggcactatggcgcggcagttgatttgctcgtaatggcagggaagtat
tccgatgccgttgacatgtgtttgaaattcaacgttacgctgacagaagccttagctgat
caactaggaagtgccgataacaatagtcgattgctgctccagttggccgaagttgctcaa
cgtcagggtgactaccaattagctgccaaaaagttcactcaagctggagataaataccaa
gcgatgaaagctctcatgaaatcgggcgacactgatcgagtaatattcttcgcgaacgta
tcccggcagccagacatttacatacttgctgggaactatttacaaacattggattggcgc
tcgcatccggaatatgtgaagcatattgttactttctacacaaaagctagatcacttgat
cttcttgtagggttttatgaagcttgtgcgcaggccgaggtggacgaataccagagctat
gataatgcaatggacgctttaaaagaagctcataaaatagtttcgaaaacccccgaaaac
aatcagtcgacaaagtcaaatatgcttgccatgaaaatggcttttctcgagcagtttatc
aacatcaagcaaatgtctgcgacaaactctcaagtgattcctcagtttgaaagcattctt
agctcacctggtatggacttgggcattttgaggccaggaaatgtttatgccacaattttt
caactatatgttgatcaccaaatgcacaacgaagctcttcaaactttggatgggatgaaa
acaactattccaaatttcatgacttatttggatcgtgacactgtatcaaaactttgcttc
acattgaatctctctcccacactttatctgaaacaagatttccaggatgaagaggagaat
ccagaggatataacagaaatcatcaatcaaagaaaataa
DBGET
integrated database retrieval system
