Drosophila miranda: 108159023
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Entry
108159023 CDS
T06132
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dmn
Drosophila miranda
Pathway
dmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108159023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmn03019
]
108159023
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108159023
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108159023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_1st
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
DUF4327
TFIIA
Motif
Other DBs
NCBI-GeneID:
108159023
NCBI-ProteinID:
XP_017147424
LinkDB
All DBs
Position
3:21729491..21741597
Genome browser
AA seq
2559 aa
AA seq
DB search
MNVENLKTPPTQLRNLVKHVNKRNFNETSQQINQFIKDHGLEADRSSLRYLFTAINFSDL
SPTVTVQLQAKLLGGQLQRQLQSSSFVSNICFAFDQHFANSQKSLKPSETAELIGQVCRL
TGINKLCECVFALAVTHSSHPELRESARDCLRGSITELLDSYLGNNNSSSATSGLQDISI
DLLQYLLCCLKKYVTPKLHEQFLIKLREEFPRQAVPLILAPFLYGSTTAATSNPVGANAS
ETDAEAEATTTTETETASSSISPSTSSNSCGTDALNEVGIEDIYDHLSEIIFTNQGKNNI
MDTSWINIILEIGYEFTSSVEECKNHLCSRERERTELQPKDVAKIVGLMCRRHSSLLDCN
VNLPTPANFWPGQGQGGGSNSSGGSSQAQATAQQGQNSSSNSNNNDGASDGGGSSSSDKK
DKKETTDATQTWKPDVFVQALKELVPQLNWKDVCIELDHPEFVVKDRIGLDLLLTIMRLA
TQSNIFPHPECIYRHWANTEGQLSLISTLLKNPDLFSFADFVFSQPTLDVLKTAPDADNK
EISAWKSLHLVEVLLSIADKGYYTQVHELFKFPAQNCPDVLFLALLHINPPLTPLRQDLF
NLLIPMFLNNHPNSNVILASAWSSTNFSLRPNIMNAMSEWYLRSSDFDQVKLSRILDLAQ
DLKALSSLLNARSFLFIIDLACLASRREYLKLEKWLTDKIRDHGEPFMQAMIKVLLRRCP
QVANAKVPEEQLPPKQAQLLPETVTTMINCLQTCINSCMQPELVEMIMQMTANVAIMANK
ARAQQQQQQQQQQQQQPGLVPPPPPSILRHRGMDLPGGIVPPSPQQQQQQQQPFSGSLNA
QQMFGPGMDPLTNMSNNLAGLNLSGPNGAFNFGNMLTSPSRLMGPGGSPYPLNPMQMPQP
LPPPPNVGNLGRMIPGGPQQPPTPSSAPPTAPNPNNPVMADLQIPVSKEVEDEVNSYFQR
IYNHQPNPTLSIDEVLDILQRFKESSNRREQEVFLCMLRNLFEEYRFFCQYPEKELQITA
QLFGGIIDRNLVPTFVALGLSLRCVLDALRKPDGSKLYYFGVTALDRFKTRLHTYNKYCE
HIRSIPHFSDFPQHLIQYVEYGMHGQEPPPHKLVGLSNTISALATGPPTEPLYRTSAMQG
HVPATAAPSSGQKTAVAVSHATRMKSIANATNIDTLLVANQEEKVTVPPEPVQDKTAFIF
NNLSQLNIPQKCDEIKEIMTQEYWPWLAQYLVLKRASMEFNFHTLYYNFLDALKNGEINR
FVTKETLRNIKVLLRSDKGVINFSDRSLLKNLGHWLGMMTLGRNRPILQLDLDLKSLLAE
AYHKGQQELLFVVPFVAKILESSAKSKIFRSPNPWTMGIMYVLGELHQEPDLKLNLKFEI
EVLCKTLNLELAKLRPVIYLKDPTRALQIEQQMSQPKPKQTESVPSPAAIQAIQQPPPPQ
QQQQQQQQQQQPPPQQQQQQQQQQQQQPPPPPPAEVDAAQAAAMMMNAAGGGSNNASGSV
ASPSLPIDPSQVSLPPPEPRYSYVEVNVTNFQLIAQQLVLPPNIPFLHANPGIKHIVINA
VERTITDWLQPVVDRSIRIACATTEQIIRKDFALDADENRVRTAAHQMVRNLAAGMAMIT
GKDEIARAISQNLHKAFVSALTGMPSLSEIQAASMQLASENVELVCAFIQKTSAEKAVLE
IDRRLSTDIETRKIAREEGNRFVDAQILSYQQERLPEAVRIKVGAAPATLYAVYSEFART
IPGFQQMSDRDIALFAPKPQDLPPPNVFANDDSSMVYAEVAAKMEAFMNTAINVPTLQLQ
AGKMHMLLNALMSTRRLRDQESAFILLTRAVEGLTEGLINVQEHLEQMKLYRDIHLRILS
LLHNSFGAPNTERAVTKCFFEIREEARFNVEAARALITAHFVNLNQFDGMLRDCMDNGNN
YMAISFGIGLIERLIVEDRAINIVSDNEFMATVELLGRLTQHRHRYPECIVNAIDTLWSG
NFNSTADYSQFNANERSLAGASQYIHSGMLHVRTCDTDDPPGLQEKTEFLLKDWVALYAQ
QTQQTTRDARNFGAFVQKMNTYGILKTDDLITRFFRQATNICTDVVYRMFADPSMPINQA
KNKIFQWIDAFVHLIAMLVRHSGEPGNPTTKINLLNKVLGIVLGTLLKDHEMRGVSFQQV
GYHRFFMMLFMELCSADVNLDALMHSIVSAFAYTYHQLKPSVAPGFCFAWLELISHRVFL
GRILVQIPGQKGWPLYAQLLQDLFKYLAPFLRNTELGKPVQLLYKGTLRVLLVLLHDFPE
FLCDYHFGFCDTIPPNCVQMRNIILSAFPRNMRLPDPFTPNLKVDMLSDSSNXPKVLSSY
ILNIKPPNFKKDLDSYIKARAPVTFLSELRGHLQVTSEPGTRYNMTLMNALVMYVGTQAI
ALIRNKNFVPNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCA
VLHLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAP
EITKLFESVARSCLAKSNVTQQLNMAIVDGESQEVGNIN
NT seq
7680 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtagagaacttgaaaacaccgccaacgcagcttcgtaatttggtcaaacacgtg
aacaagcgaaattttaatgaaaccagccagcaaataaaccagttcatcaaagaccacggc
ctggaagctgatcgtagcagtctgcgctatctgttcactgcgatcaacttcagtgaccta
tcgccgaccgtcaccgtccagttgcaagccaaattactcggtggccagttgcagcggcag
ttgcaaagctcctcgtttgtgtccaacatctgcttcgcgtttgaccagcactttgccaac
agccaaaagtctcttaagccgtctgagacagcagagctcattggccaggtgtgcagactg
accggcataaacaagctctgcgagtgcgtatttgccttggcggtgacccactcgtcgcat
ccagagcttcgagaatcggccagagactgcttgcgaggctccataaccgagctgctcgat
tcctatttggggaacaacaacagctcctcagctaccagtgggctgcaagatatatcgatc
gatcttctgcagtatttgctgtgctgcctcaagaaatacgtgacgccgaagctgcacgag
caatttttgatcaaactacgtgaggagtttccgcggcaggcggtgcctttgattttggcg
ccgttcctttacggctcaacgacggcggcgacctcgaatccagttggggccaacgccagc
gaaactgatgcagaggctgaggcaacgacaacgacagagacagagacggccagcagcagc
atcagccccagcaccagcagcaacagttgcggcacggatgccttgaatgaggttggaatc
gaggatatctatgatcatttaagcgaaataatattcacaaaccagggtaaaaataatatt
atggacacatcttggattaatataatccttgaaatcggttacgaatttacatcgagcgtc
gaagagtgtaaaaatcacctgtgctctcgcgaacgagagcgcaccgaactccagccaaaa
gatgttgccaaaatcgttggtctcatgtgccggcggcactcgtctttgctcgattgtaat
gttaatctaccgacgccagctaatttctggcctggacaaggtcaaggcggtggcagcaac
agtagcgggggctcgtcccaagcacaggccacagcgcagcagggacagaactcaagcagc
aacagtaacaacaacgatggagccagcgacggtggaggcagctcgtccagtgataagaag
gacaagaaggagacgacagatgccacacagacatggaagccggatgtctttgtgcaggca
ctcaaggaactggtgccacagctcaactggaaggacgtctgcattgagctcgatcatcct
gagtttgtggtgaaggatcgcatcggcttggacctgctgttgacaattatgcgactggcc
acccagtcgaacatctttccacatccagaatgcatttaccgccactgggccaacacggag
ggacagctgtcgctgatctcgacgctgctaaagaatccggatctgttctcctttgccgac
tttgtgttcagtcagccaacgctggatgtcctgaagacggcaccggatgcggacaacaag
gagatttcggcctggaagtccctccaccttgtcgaggtcctgctctctattgcggacaag
ggctactacacgcaggtccatgagctgttcaagttccctgcacagaactgcccggacgtc
ctgtttttggcactgctgcatataaatccaccactgacaccgctgcggcaggacttgttc
aatttgttgataccgatgttcctcaacaatcatcccaactcgaatgtgatcctggccagc
gcctggagctcgaccaacttttcgctgcggccgaacattatgaacgccatgtccgagtgg
tatctgcgcagcagcgactttgatcaggtgaagctgtcgcgcattctcgatctcgcgcag
gacctgaaggcgctctcgtcgctcctgaatgcacgctcctttcttttcatcatcgatctg
gcttgcctggcctccaggcgggagtacttgaagctggagaaatggctgaccgataagatc
cgcgatcatggtgagcccttcatgcaggccatgataaaggtgctgctgcggcgctgccca
caggtggccaatgccaaggtgcccgaggaacagttgccaccgaaacaggcccagctgctg
cccgagacggtaaccacgatgatcaattgcctccagacgtgcatcaacagttgcatgcag
cccgagctggtcgagatgatcatgcagatgaccgccaatgtggccattatggcgaataag
gcacgtgcccaacaacagcagcagcagcagcaacaacaacaacagcagcccggtctggtg
ccgccaccgccgccgagtattctgcgtcatcgcgggatggatctacccggtggcattgtt
cccccatcaccgcagcagcagcagcaacagcagcagcccttctccggcagcctcaatgcc
cagcaaatgtttggccccggcatggatccactcaccaatatgtcgaacaatctggcaggc
ctcaatctgagtggaccgaatggagccttcaactttggaaatatgttaacatctccgtcc
cgcctgatgggtcccggaggcagcccctatcctctgaatcccatgcagatgccgcagcct
ctaccgccgccaccgaatgtcggaaatctgggtcgcatgatacccgggggaccgcaacag
ccgccgacaccatcatcggcaccgccgacggcacccaatcccaacaatccggtgatggct
gacctgcagattcccgtgtccaaggaggtggaggatgaggtgaactcgtatttccaacgc
atatacaaccatcagcccaatccgacgctctcgattgacgaagtgctggacatactgcag
cgcttcaaagagtccagcaatcgacgggagcaggaggtcttcctgtgcatgctgcgaaac
ctgttcgaggagtatcgcttcttctgccagtatccggaaaaggagctacagatcaccgct
caactgtttggcggcatcatagaccgcaacctggtgcccactttcgtggcgctcggtctc
tcgctgcgctgcgtcctggatgccctgcgcaagccagacggctccaagctctattacttt
ggagtgacggccctcgatcggttcaagacacgacttcacacatacaacaagtactgcgag
catatccgctccattccgcacttctcggactttccgcagcatctcatccagtatgtggaa
tatgggatgcacggccaggagccgccgccgcataagctggtgggcctgagcaacacaatc
tcggccctggccacaggaccaccgacggaaccgctctatcgcaccagtgccatgcaaggc
catgtgccggcaactgcagctcccagctccggccagaagaccgctgtggctgtgtcgcat
gccacacgtatgaagtctattgccaatgcgacaaatatcgacactctgctggtggccaat
caggaggagaaggtgacggtgccgccggaaccggtgcaggacaagacggcctttatattc
aacaatctcagtcagctgaacataccgcaaaagtgcgatgagatcaaggagattatgacc
caggagtattggccatggctggcccagtatctagtcctcaagcgagcctccatggagttc
aactttcacacgctctactacaactttctggatgcgctcaagaacggcgagatcaatcgt
tttgtgaccaaggagacgctgcgcaacatcaaggtgctgctgcgctccgacaagggtgtg
atcaacttctcggaccgcagtctgctgaagaatctcggccactggctgggcatgatgacc
ctgggtcgcaaccgacccattctgcagcttgacctcgatctcaagtcgctactggccgag
gcctatcacaaggggcagcaggagctactgttcgttgtgccttttgtggcaaagatcttg
gaatcgtcggcaaagtcgaaaatcttccgttcccccaatccctggacaatgggcatcatg
tatgtgctgggggaactgcatcaggagccggatctcaaactgaacctcaagttcgaaatc
gaagttctctgcaaaacactcaatctggagttggccaagttgcggccagtcatctacctg
aaggatccaacccgggccctgcaaatcgagcagcaaatgtcccagccgaagcccaagcag
acggaatctgtgccttcgccggcagcaatccaagcgatccaacagccaccgccgccgcag
cagcagcaacaacaacaacagcaacagcaacagccgccaccacagcaacaacagcagcag
cagcagcaacagcaacagcaacctcctccaccgcctccagcggaggtggatgccgcccag
gcagcagccatgatgatgaacgctgctggaggaggctcgaacaacgcatcaggatcggtt
gcctcgcccagtctgcccatcgatcccagtcaggtgtccctgccaccgccagagccacgc
tactcttacgtggaggtcaacgtgaccaacttccagctaatagcccagcagctggtgctg
ccacccaacatacccttcctgcacgccaatccgggcatcaagcacatcgtcatcaatgcc
gtggagcgcaccattaccgattggctgcagcccgtcgtggatcgcagcatccgcatcgcc
tgcgccaccacggagcagatcatacgcaaggactttgccctggatgcggatgagaaccgc
gtgcgcactgctgcccaccaaatggtgcgcaatcttgctgccggcatggccatgattacc
ggcaaagacgagatcgcgcgcgccattagccagaatctacacaaagcctttgtgtcggct
ctgacgggcatgcccagcctctcggaaattcaggccgcctccatgcagctggccagcgag
aatgtggagctggtgtgcgccttcatccagaagacatcggccgagaaggcggtcctcgag
atcgatcggcgcctttccaccgacatcgagacgcggaagattgcccgcgaggagggaaat
cgctttgtggatgcccagatcttgagctatcagcaggagcgactgccggaggctgtgcgc
atcaaggtgggcgctgccccggccacactgtatgcggtatactcggagtttgctcgcacc
attccgggattccagcagatgagcgacagggacattgccctgttcgctcccaagccgcag
gacctgccaccgccgaatgtgttcgccaacgatgacagcagcatggtgtacgccgaagtg
gccgccaaaatggaggcctttatgaacacggccattaatgtgccgacgctgcagctgcag
gccggcaaaatgcacatgctcctcaacgccctgatgtctacgcgtcgtctgcgcgatcag
gagtctgcgttcattctgctgacccgcgccgtcgagggtctcaccgagggactcatcaac
gtccaggagcacttggagcagatgaagctctatcgcgacattcacctgcgcatcctcagt
ctgctgcacaacagctttggggcccccaacaccgagagagcggtgaccaagtgcttcttc
gaaatccgcgaggaagcccgcttcaacgtggaggccgcccgtgccctgatcactgcgcac
tttgtcaacctcaatcagttcgatggcatgctgcgcgactgcatggacaatggcaacaat
tacatggccatctcgtttggaattggtctgatcgagcgccttattgtggaggatcgggcc
attaacattgtgtccgacaacgagttcatggccaccgtcgagctgctcggccgcctcacc
caacatcgccatcggtatcccgagtgcattgtcaatgccatcgatacactgtggtccggc
aacttcaactccaccgctgactacagtcagttcaatgccaacgagcgttctctggccggt
gcctcccagtacatacactccggcatgcttcacgttaggacatgcgacacagacgatccg
ccaggcttgcaggagaagaccgagttcttgctcaaggactgggtggccctctacgcacag
cagacccaacagacgacgcgcgatgcccggaactttggggcctttgtccagaagatgaac
acctatgggatactaaagacagacgatttgatcacacgcttcttccggcaggcgacgaac
atctgcacggatgtggtgtaccgcatgtttgcggatccgagcatgcccattaaccaggcg
aagaacaagatattccagtggatcgatgcgtttgtgcatctgattgcgatgctcgtgcga
cactctggcgaaccgggtaaccccacaaccaagatcaacctgctgaacaaggtgctgggc
attgtgctgggcacactgctcaaggatcacgagatgcgtggcgttagcttccagcaggtg
ggctaccaccggttcttcatgatgctcttcatggagctgtgctcggccgatgtcaacctg
gacgcgctgatgcacagcattgtgtcggcctttgcctacacataccaccagctcaaaccc
agtgtggcgcccggcttctgctttgcctggctggagctcatttcacaccgcgtcttcctc
ggccggatactcgttcagatacccggccagaagggctggccactgtacgcccagctgctg
caggatcttttcaaatatctggccccattcttgcgcaacacggagctgggcaaacccgtg
cagctcctctacaagggcaccttgcgcgtccttttggtgctgctgcacgactttccagag
ttcctgtgcgactatcatttcgggttctgcgacaccataccgcccaactgtgttcagatg
cgcaacatcatcctgtcggcattcccgcgcaacatgcgcctgcccgaccccttcacgccc
aacctcaaggtggacatgctctcggacagcagcaatngccccaaggtgctcagcagctac
atcttgaacatcaagccgccgaacttcaagaaggacctcgactcttacatcaaggcacgc
gccccagttaccttcctctcggagctgcgcggccatctgcaggtgaccagtgagccgggc
acccgctacaacatgacactgatgaatgccctggtcatgtatgtgggcacacaggcgatt
gcactcatcaggaacaaaaactttgtgcccaacacttccaacatagcacacagcgcgcac
atggatatcttccagaatctggccgttgacttggacaccgagggtcgctatctgttcctc
aatgcgattgccaatcagttgcggtatcccaacagccacacgcactactttagctgtgcc
gtcttgcacttgtttgccgaggcaaactcggaggcgatccaggagcaaatcacgcgtgtt
ctactcgagcgtttgattgtgaaccggccgcatccgtggggtctgctcatcaccttcatt
gagctgatcaagaaccccatctacaagttctgggatcacgattttgtgcactgtgctccg
gagataaccaagctcttcgaatctgtggctcgctcctgcctggccaagtcgaacgtcacc
cagcagctgaacatggccatcgtcgatggagagagccaggaggtgggcaacattaactga
DBGET
integrated database retrieval system
