Dehalococcoides mccartyi CG1: X792_08050
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Entry
X792_08050 CDS
T03647
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dmx
Dehalococcoides mccartyi CG1
Pathway
dmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X792_08050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmx03019
]
X792_08050
Messenger RNA biogenesis [BR:
dmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X792_08050
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_NusA_2nd
KH_KhpA-B
KH_2
LapA_dom
BTBD16_C
DUF4407
DUF668
Motif
Other DBs
NCBI-ProteinID:
AII58609
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Position
1457740..1459278
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AA seq
512 aa
AA seq
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MPLSAILAIFFSFIIGIVFGGMALFVFRGFIMNRQLRIAQRKATKMLADSKTEAKDVLVE
AKHEADKVRNSAESELKERRSELAKQENRVMQKTEALDRKLENLEQREQSLTNREKSIDE
TQSQIEEIRTAELKRLEEVANMTTEQAKSSLLEMLEGEMQQETSRRLREWEIKIKAEADE
KAREVVSQAIQRCASDVVTETTTNVVPLPSDEMKGRLIGREGRNIRALEQATGVDLIIDD
TPEAVTISSFDPVRREVARQALSKLIIDGRIHPARIEEVVTKAKEEVEAAMIASGEQAAY
QAGVHGLRPEIIKVMGRLKYRTSYGQNVLQHSIEVAQMSGMIGSELGVNVTLARRAGFLH
DIGKAVDRDVEGTHTQIGADMVKQWEKSPEVIKGVAEHHFDTPTVSIWGFIVSAADAISS
ARPGARRESLENYIKRLKALEEIADSFKGVEKSFAIQAGREVRIMVKPDEIDDLGAMRLA
RDIVKKIEDGLEYPGQIKVTVIRETRSVDFAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ctgcctttgtctgccattctggcaatcttttttagttttattataggtattgtattcggc
ggcatggccctttttgtattcaggggctttataatgaaccgccagctccgcatcgcccag
cgaaaagcaaccaaaatgctggctgactctaaaacggaagctaaagatgtgctggtggaa
gccaaacacgaagcggacaaggtccgcaattccgccgagtctgagcttaaagaacgccgt
tctgaactggctaaacaggaaaaccgggttatgcagaagaccgaagccctggaccgtaag
cttgaaaatcttgaacagcgcgaacagtctttgaccaaccgggaaaaaagtattgacgaa
acccagtctcagattgaagaaatacgcacagccgaactgaaacgtctggaagaagtggcc
aacatgactactgagcaggccaaatcaagtctgcttgaaatgctggaaggtgaaatgcag
caggagacctcccgccgcctgcgtgagtgggagataaaaataaaagccgaagcagatgaa
aaagcccgcgaagttgtttcccaggctatccagcgttgtgcctctgatgtagttaccgaa
actaccaccaatgtcgtacccttgccaagcgatgaaatgaagggcaggctgattggccgc
gaaggccgcaatatacgggctctggagcaggccaccggcgtagacctaattatagatgac
actccggaggcagttactatctccagttttgacccggtaaggcgtgaagttgccagacag
gcactttcaaaacttatcatcgacgggcgtattcatccggcccgtattgaagaagtggta
accaaagccaaagaggaagtagaagccgctatgatagcttccggcgaacaggccgcttat
caggcaggcgttcacggactgcggcccgaaataatcaaagtaatgggacggctgaaatac
cgcaccagttacggacagaatgttcttcagcacagtatagaggtagcccagatgtccggt
atgataggcagcgagttgggtgtaaatgttacccttgccagacgggccggcttcctgcat
gacataggcaaagcggttgaccgtgacgtggaaggcacccatacccagataggtgcggat
atggttaaacagtgggaaaaatcacccgaggttatcaagggtgtggctgaacaccatttt
gacactcccactgtctccatctggggttttatagtatccgccgcagacgccatttcttcg
gccagacccggcgcccgccgcgaatcactggaaaactatatcaaacgcctcaaggccctc
gaagaaattgccgacagcttcaaaggggttgaaaaatcctttgccatacaggccgggcgc
gaagtgcgcatcatggttaaacctgacgagattgatgacctgggtgctatgcggctggcc
agagatattgtcaagaagattgaagacgggctggagtaccccggacagattaaggttacc
gttatccgggaaaccaggtccgtagactttgccaagtaa
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