Dehalococcoides mccartyi CG4: X793_07405
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Entry
X793_07405 CDS
T03648
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dmy
Dehalococcoides mccartyi CG4
Pathway
dmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X793_07405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmy03019
]
X793_07405
Messenger RNA biogenesis [BR:
dmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X793_07405
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_NusA_2nd
KH_KhpA-B
KH_2
LapA_dom
DUF4407
DUF1664
BTBD16_C
Motif
Other DBs
NCBI-ProteinID:
AII60113
LinkDB
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Position
1353346..1354884
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AA seq
512 aa
AA seq
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MPLSAILAIFFSFIIGIVFGGMALFVFRGFIMNRQLRIAQRKATKMLADSKVEAKDVLVE
AKREADKARNSAEAELKERRSELAKQENRVMQKTEALDRKLENLEQREQSLTNREKSIDE
TQSQIEEIRTAELKRLEEVASMTTEQAKSSLLEMLEGEMQQETSRRLREWEIKIKAEADE
KAREIVSQAIQRCASDVVTETTTNVVPLPSDEMKGRLIGREGRNIRALEQATGVDLIIDD
TPEAVTISSFDPVRREIARQALSKLIIDGRIHPARIEEVVAKAKEEVEAAMIASGEQAAY
QAGVHGLRPEIIKVMGRLKYRTSYGQNVLQHSIEVAQMSGMIGSELGVNVTLARRAGFLH
DIGKAVDRDVEGTHTQIGADMVKQWEKSPEVIKGVAEHHFDTPTVSIWGFIVSAADAISS
ARPGARRESLENYIKRLKALEEIADSFKGVEKSFAIQAGREVRIMVKPEEIDDLGAMRLA
RDIVKKIEDGLEYPGQIKVTVIRETRSVDFAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ctgcctttatctgccattctggccatcttttttagttttattataggtattgtcttcggc
ggtatggccctgtttgtattcaggggctttattatgaaccgccagctccgcatcgcccag
cgcaaagcaaccaaaatgctggcggactccaaagtggaagctaaagatgtgctggtggaa
gccaagcgcgaagctgacaaggcccgcaattccgccgaagctgaacttaaagaacgccgt
tctgaactggccaagcaggaaaacagggttatgcagaagaccgaagccctggaccgcaag
cttgaaaacctggaacagcgggaacagtccttaaccaaccgggaaaaaagcattgatgag
acacagtcccagattgaagaaatacggacagccgaactgaagcgtctggaagaagtggcc
agcatgaccactgaacaggccaagtcaagtttgcttgagatgctggaaggcgaaatgcag
caggaaacctcccgccgattgcgcgagtgggagataaaaatcaaggctgaagcggatgaa
aaagcccgggagattgtttcccaggctatccagcgctgtgcctctgacgtagttaccgaa
accactaccaatgtcgtacccctgcccagcgatgaaatgaagggcaggctgattggccgc
gaaggccgcaatatacgggcgctggaacaggcaaccggtgtagaccttattatagatgac
accccggaggcagttactatctccagttttgacccggtacggcgggaaattgccagacag
gcactttccaaacttattattgacgggcgtatccacccggcccgcatagaagaagtggta
gccaaagccaaagaggaagtggaagccgccatgatagcttccggcgaacaggccgcctat
caggcaggcgttcacggactgcggcctgaaatcataaaggtaatggggcggctgaagtac
cgcaccagttacggccagaacgtgcttcagcacagtatagaggtagcccagatgtccggc
atgataggcagcgagctgggggtaaatgttacccttgccagacgggccggcttcctgcat
gacataggcaaagcggttgaccgtgacgtggaaggcacccatacccagataggcgcagac
atggtcaagcagtgggaaaaatcacccgaagttatcaagggtgtggctgaacaccacttt
gacacccccaccgtttccatctggggttttatcgtatctgccgcagatgccatttcttcg
gccagacccggtgcccgccgcgaatcactggaaaactacatcaaacgcctcaaggctctt
gaagagattgccgacagcttcaaaggggttgagaaatcctttgccatacaggccgggcgc
gaagtgcgcatcatggtcaaacctgaggagattgatgacctgggtgctatgcggctggcc
agagatatagtcaagaagattgaagacgggctggagtaccccggacagattaaggttact
gttatccgggaaacccggtctgtagactttgccaagtag
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