Dokdonia sp. Dokd-P16: DCS32_01020
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Entry
DCS32_01020 CDS
T05432
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dod
Dokdonia sp. Dokd-P16
Pathway
dod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCS32_01020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dod03019
]
DCS32_01020
03400 DNA repair and recombination proteins [BR:
dod03400
]
DCS32_01020
Enzymes [BR:
dod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCS32_01020
Messenger RNA biogenesis [BR:
dod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCS32_01020
DNA repair and recombination proteins [BR:
dod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DCS32_01020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Top6b_C
HTH_KIF26A_B_1st
Motif
Other DBs
NCBI-ProteinID:
AWH72794
LinkDB
All DBs
Position
226412..228301
Genome browser
AA seq
629 aa
AA seq
DB search
MSNQAQDILQQYWGHSTFRPQQAEIIKNVLAGSDSIALLPTGGGKSLCYQLPALLLDGIT
IVVSPLIALMKDQVMTLQEKGIKALSITSGISFSELDTLLDNCIYGNYKLLYLSPERLQQ
ELVRERIKLMNVSLIAVDEAHCISQWGHDFRPAYREISKLRALKPTVPFIALTATATPKV
LKDITEQLELQDPQLFKTSYHRPNLTYNVVQATDKFYQLETILANTKASAIVYVRNRKAT
LNTAHFLKGRGISATSYHGGMSRDERHKQYLAWRNNKVQVMVGTSAFGMGIDKADVATVV
HLEIPDSIENYFQESGRAGRAGQESQAVLLYNENDEVRLENQFIKVIPQVADVKKIYKHL
NNYFQISYGEGQETLHRFNFSEFCATYKLHTILTFNALQTLDRNSVISLSQEFTKRATIN
FKVNDFALSYYLIRNNQLDDVVKAVLRTYGAVFEQVTNINYSIVATKASKTIEQVHQVLL
TLEKDDIIDYEHQNYDTAITFLVPRDDDRTINVIAPYINAQATYKKNQVDAIKTYLATDT
VCRAIQLMQYFDETLTTPCGKCDVCTNATHQVSRTAIHSAIIDILREGPKTSREISQLDY
PQQTIINTIRLLLDQKKIAILANNTYTLL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaatcaagcgcaagacatattacaacaatactggggtcactccacctttagacca
caacaagcagaaattataaagaatgtgcttgctgggagtgatagtattgcactattaccc
acaggtggcggaaagtctctatgctatcaattacctgcgttattactggacggtattacg
atagtggtatcaccacttatcgctttaatgaaagaccaagtaatgactttgcaagaaaaa
ggtatcaaagcgctctctatcacaagcggaatttcctttagcgagctagacacgctactc
gataattgcatttatggcaactacaagcttttatatctctcaccagagcgattacaacaa
gagcttgtaagagaacgtattaaacttatgaatgtctctctcatcgctgtagatgaggct
cattgtatttctcaatggggacatgactttagacccgcatatagagaaatctcaaaatta
cgtgctctcaagcctaccgtaccatttatagcgcttactgctacagcaacacctaaggta
ttaaaggatatcacagagcagctagaattacaagatccgcagttatttaaaacttcttat
caccgccctaatctcacatataatgtagtgcaagctacagacaagttttaccagctagaa
actatcctcgcaaatacaaaggctagtgctattgtatatgtgcgtaatagaaaggctaca
cttaatactgctcactttttaaaaggcagaggcatctctgccacctcttaccacggaggt
atgtctcgtgatgaacgtcacaaacaatacctcgcatggcgtaataataaagtgcaggtc
atggtaggcacaagtgcctttgggatgggaattgataaggcagacgtagctactgtagtg
catttagaaatccctgatagtatagaaaattactttcaagagtctggaagagctggaaga
gctggacaagaatcacaagctgtactcctttataatgaaaatgacgaggtgcgattagaa
aatcagtttataaaagtgattcctcaggtagcagatgtgaaaaaaatatacaagcacctc
aacaactactttcagatctcttatggtgagggccaagagacactgcatcgatttaacttc
agtgaattttgtgcaacttacaaacttcatacgattcttacatttaatgcgcttcaaaca
ctagatcgtaatagcgtgataagcttatctcaagaatttacaaagcgcgcaacaatcaac
tttaaagtaaatgactttgcgctttcttactatttgattcgcaataatcagctggatgat
gtggttaaggctgttcttagaacgtatggagccgtttttgaacaagtcacaaatatcaac
tatagcattgtagctacaaaagctagtaaaactatagaacaggtacaccaagtcctactt
actcttgagaaagatgacatcatagattacgagcatcaaaattatgataccgcaattacc
ttccttgtgcctagagatgatgatagaactataaacgtcattgctccatatataaatgca
caagctacgtataagaaaaaccaagtagatgctataaaaacatatctcgctacagatacc
gtttgcagggcaatccaacttatgcagtactttgatgagacattaaccacaccctgtgga
aagtgtgatgtatgtacaaatgcaacacaccaagtttcaagaactgctatacacagtgct
attattgatattttaagagaaggtccaaaaacttctcgcgaaatatcacaactagactac
ccacaacaaaccataattaatacgattcgactacttttggatcagaaaaagatagccatc
ttggcaaataacacctacaccttattatga
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